Gene List
This API endpoint handles listing (/genes) and retrieval (/genes/<ID>/) of genes that are contained in the database due to their association to
genetic variants that are involved in at least one oligogenic combination in OLIDA.
GET /api/genecombinations/798/genes/?format=api
{ "data": [ { "type": "Gene", "id": "DUOX2", "attributes": { "go_molecular_function": [ "['heme binding', 'NADPH oxidase H202-forming activity', 'NADH oxidase H202-forming activity', 'calcium ion binding', 'peroxidase activity', 'NAD(P)H oxidase H2O2-forming activity', 'protein binding', 'superoxide-generating NAD(P)H oxidase activity']" ], "pathway_id": [ "kegg_path:hsa04918", "R-HSA-1430728", "R-HSA-209776", "R-HSA-209968", "R-HSA-71291" ], "essential_gene": "Non-essential", "status": "CU", "uniprot_acc": "Q9NRD8", "ensembl_id": "None", "entrez_id": "ENSG00000140279", "chromosome_number": "15", "lastmodified": "2021-10-18T11:00:44.392952" }, "relationships": { "variant_set": { "meta": { "count": 52 }, "data": [ { "type": "SmallVariant", "id": "68" }, { "type": "SmallVariant", "id": "69" }, { "type": "SmallVariant", "id": "84" }, { "type": "SmallVariant", "id": "996" }, { "type": "SmallVariant", "id": "1002" }, { "type": "SmallVariant", "id": "1005" }, { "type": "SmallVariant", "id": "1011" }, { "type": "SmallVariant", "id": "1012" }, { "type": "SmallVariant", "id": "1018" }, { "type": "SmallVariant", "id": "1020" }, { "type": "SmallVariant", "id": "1021" }, { "type": "SmallVariant", "id": "1097" }, { "type": "SmallVariant", "id": "1098" }, { "type": "SmallVariant", "id": "1172" }, { "type": "SmallVariant", "id": "1174" }, { "type": "SmallVariant", "id": "1176" }, { "type": "SmallVariant", "id": "1178" }, { "type": "SmallVariant", "id": "1179" }, { "type": "SmallVariant", "id": "1180" }, { "type": "SmallVariant", "id": "1184" }, { "type": "SmallVariant", "id": "1234" }, { "type": "SmallVariant", "id": "1252" }, { "type": "SmallVariant", "id": "1253" }, { "type": "SmallVariant", "id": "1256" }, { "type": "SmallVariant", "id": "1261" }, { "type": "SmallVariant", "id": "1262" }, { "type": "SmallVariant", "id": "1263" }, { "type": "SmallVariant", "id": "2143" }, { "type": "SmallVariant", "id": "2145" }, { "type": "SmallVariant", "id": "2147" }, { "type": "SmallVariant", "id": "2149" }, { "type": "SmallVariant", "id": "2152" }, { "type": "SmallVariant", "id": "2208" }, { "type": "SmallVariant", "id": "2210" }, { "type": "SmallVariant", "id": "2212" }, { "type": "SmallVariant", "id": "2214" }, { "type": "SmallVariant", "id": "2216" }, { "type": "SmallVariant", "id": "2349" }, { "type": "SmallVariant", "id": "2359" }, { "type": "SmallVariant", "id": "2362" }, { "type": "SmallVariant", "id": "2371" }, { "type": "SmallVariant", "id": "2373" }, { "type": "SmallVariant", "id": "2523" }, { "type": "SmallVariant", "id": "2524" }, { "type": "SmallVariant", "id": "3123" }, { "type": "SmallVariant", "id": "3128" }, { "type": "SmallVariant", "id": "3132" }, { "type": "SmallVariant", "id": "3133" }, { "type": "SmallVariant", "id": "3144" }, { "type": "SmallVariant", "id": "3774" }, { "type": "SmallVariant", "id": "3775" }, { "type": "SmallVariant", "id": "3776" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/DUOX2/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/DUOX2/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 22 }, "data": [ { "type": "GeneCombination", "id": "26" }, { "type": "GeneCombination", "id": "27" }, { "type": "GeneCombination", "id": "319" }, { "type": "GeneCombination", "id": "321" }, { "type": "GeneCombination", "id": "323" }, { "type": "GeneCombination", "id": "378" }, { "type": "GeneCombination", "id": "394" }, { "type": "GeneCombination", "id": "400" }, { "type": "GeneCombination", "id": "402" }, { "type": "GeneCombination", "id": "797" }, { "type": "GeneCombination", "id": "794" }, { "type": "GeneCombination", "id": "803" }, { "type": "GeneCombination", "id": "804" }, { "type": "GeneCombination", "id": "795" }, { "type": "GeneCombination", "id": "359" }, { "type": "GeneCombination", "id": "1045" }, { "type": "GeneCombination", "id": "1046" }, { "type": "GeneCombination", "id": "1047" }, { "type": "GeneCombination", "id": "1051" }, { "type": "GeneCombination", "id": "798" }, { "type": "GeneCombination", "id": "799" }, { "type": "GeneCombination", "id": "800" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/DUOX2/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/DUOX2/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/DUOX2/?format=api" } }, { "type": "Gene", "id": "NKX2-1", "attributes": { "go_molecular_function": [ "['RNA polymerase II cis-regulatory region sequence-specific DNA binding', 'enzyme binding', 'transcription cis-regulatory region binding', 'DNA-binding transcription factor activity, RNA polymerase II-specific', 'intronic transcription regulatory region sequence-specific DNA binding', 'DNA binding', 'RNA polymerase II-specific DNA-binding transcription factor binding', 'protein binding', 'RNA polymerase II transcription regulatory region sequence-specific DNA binding', 'DNA-binding transcription factor activity']" ], "pathway_id": [], "essential_gene": "Essential", "status": "CU", "uniprot_acc": "P43699", "ensembl_id": "None", "entrez_id": "ENSG00000136352", "chromosome_number": "14", "lastmodified": "2021-10-18T11:00:44.402904" }, "relationships": { "variant_set": { "meta": { "count": 7 }, "data": [ { "type": "SmallVariant", "id": "1227" }, { "type": "SmallVariant", "id": "1231" }, { "type": "SmallVariant", "id": "1249" }, { "type": "SmallVariant", "id": "359" }, { "type": "SmallVariant", "id": "2358" }, { "type": "SmallVariant", "id": "2364" }, { "type": "SmallVariant", "id": "3148" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/NKX2-1/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/NKX2-1/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 6 }, "data": [ { "type": "GeneCombination", "id": "124" }, { "type": "GeneCombination", "id": "391" }, { "type": "GeneCombination", "id": "393" }, { "type": "GeneCombination", "id": "398" }, { "type": "GeneCombination", "id": "798" }, { "type": "GeneCombination", "id": "799" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/NKX2-1/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/NKX2-1/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/NKX2-1/?format=api" } }, { "type": "Gene", "id": "TSHR", "attributes": { "go_molecular_function": [ "['signaling receptor activity', 'thyroid-stimulating hormone receptor activity', 'protein binding', 'G protein-coupled peptide receptor activity', 'protein-containing complex binding']" ], "pathway_id": [ "kegg_path:hsa04024", "kegg_path:hsa04080", "kegg_path:hsa04918", "kegg_path:hsa04923", "kegg_path:hsa05320", "kegg_path:hsa04024", "kegg_path:hsa04080", "kegg_path:hsa04918", "kegg_path:hsa04923", "kegg_path:hsa05320", "R-HSA-162582", "R-HSA-1643685", "R-HSA-372790", "R-HSA-373076", "R-HSA-375281", "R-HSA-388396", "R-HSA-418555", "R-HSA-500792", "R-HSA-5663205", "R-HSA-9658195", "R-HSA-9660821", "R-HSA-9662851", "R-HSA-9664433" ], "essential_gene": "Essential", "status": "CU", "uniprot_acc": "A0A0A0MTJ0", "ensembl_id": "None", "entrez_id": "ENSG00000165409", "chromosome_number": "14", "lastmodified": "2021-10-18T11:00:44.615399" }, "relationships": { "variant_set": { "meta": { "count": 23 }, "data": [ { "type": "SmallVariant", "id": "2144" }, { "type": "SmallVariant", "id": "1013" }, { "type": "SmallVariant", "id": "1014" }, { "type": "SmallVariant", "id": "1099" }, { "type": "SmallVariant", "id": "1103" }, { "type": "SmallVariant", "id": "1230" }, { "type": "SmallVariant", "id": "1240" }, { "type": "SmallVariant", "id": "1241" }, { "type": "SmallVariant", "id": "1245" }, { "type": "SmallVariant", "id": "1250" }, { "type": "SmallVariant", "id": "2142" }, { "type": "SmallVariant", "id": "2146" }, { "type": "SmallVariant", "id": "2346" }, { "type": "SmallVariant", "id": "2348" }, { "type": "SmallVariant", "id": "2351" }, { "type": "SmallVariant", "id": "2360" }, { "type": "SmallVariant", "id": "3121" }, { "type": "SmallVariant", "id": "3122" }, { "type": "SmallVariant", "id": "3124" }, { "type": "SmallVariant", "id": "3127" }, { "type": "SmallVariant", "id": "3141" }, { "type": "SmallVariant", "id": "3143" }, { "type": "SmallVariant", "id": "3145" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/TSHR/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/TSHR/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 10 }, "data": [ { "type": "GeneCombination", "id": "324" }, { "type": "GeneCombination", "id": "360" }, { "type": "GeneCombination", "id": "392" }, { "type": "GeneCombination", "id": "396" }, { "type": "GeneCombination", "id": "397" }, { "type": "GeneCombination", "id": "399" }, { "type": "GeneCombination", "id": "856" }, { "type": "GeneCombination", "id": "359" }, { "type": "GeneCombination", "id": "793" }, { "type": "GeneCombination", "id": "798" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/TSHR/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/TSHR/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/TSHR/?format=api" } } ], "meta": { "database_name": "OLIgogenic diseases DAtabase (OLIDA)", "resource_url": "olida.ibsquare.be", "api_release_year": "2021", "api_developer": [ [ "Arnau Dillen", "arnau.dillen@ulb.ac.be" ], [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_version": "0.3", "api_maintainers": [ [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_documentation": [ "olida.ibsquare.be/api/swagger", "olida.ibsquare.be/api/redoc" ], "copyright": "Copyright (c) 2025 · OLIDA All Rights Reserved.", "license": "CC Attribution-NonCommercial 4.0 International License", "ontologies": { "ORDO": "http://bioportal.bioontology.org/ontologies/ORDO", "GENO": "http://purl.obolibrary.org/obo/geno.owl", "MI": "http://purl.obolibrary.org/obo/mi.owl", "NCIT": "http://purl.obolibrary.org/obo/ncit.owl", "OGI": "http://purl.obolibrary.org/obo/ogi.owl", "OGG": "http://purl.obolibrary.org/obo/ogg.owl" }, "relevant_publications_doi": [ "10.1093/nar/gkv1068", "10.1093/database/baac023" ], "size": 3 } }