Gene List
This API endpoint handles listing (/genes) and retrieval (/genes/<ID>/) of genes that are contained in the database due to their association to
genetic variants that are involved in at least one oligogenic combination in OLIDA.
GET /api/genecombinations/218/genes/?format=api
{ "data": [ { "type": "Gene", "id": "ADA2", "attributes": { "go_molecular_function": [ "heparin binding", "adenosine receptor binding", "hydrolase activity", "deaminase activity", "zinc ion binding", "adenosine deaminase activity", "metal ion binding", "growth factor activity" ], "pathway_id": [ "kegg_path:hsa00230", "R-HSA-168249", "R-HSA-392499", "R-HSA-168256", "R-HSA-5683826", "kegg_path:hsa01100", "R-HSA-6798695" ], "essential_gene": null, "status": "CU", "uniprot_acc": "Q9NZK5", "ensembl_id": "ENSG00000093072", "entrez_id": "51816", "chromosome_number": "22", "lastmodified": "2021-10-18T11:00:44.499703" }, "relationships": { "variant_set": { "meta": { "count": 1 }, "data": [ { "type": "SmallVariant", "id": "655" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/ADA2/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/ADA2/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 1 }, "data": [ { "type": "GeneCombination", "id": "218" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/ADA2/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/ADA2/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/ADA2/?format=api" } }, { "type": "Gene", "id": "APTX", "attributes": { "go_molecular_function": [ "DNA binding", "catalytic activity", "DNA-3'-diphospho-5'-guanosine diphosphatase", "metal ion binding", "DNA 5'-adenosine monophosphate hydrolase activity" ], "pathway_id": [], "essential_gene": "Non-essential", "status": "CU", "uniprot_acc": "A0A0A0MRW7", "ensembl_id": "ENSG00000137074", "entrez_id": "54840", "chromosome_number": "9", "lastmodified": "2021-10-18T11:00:44.415280" }, "relationships": { "variant_set": { "meta": { "count": 1 }, "data": [ { "type": "SmallVariant", "id": "656" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/APTX/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/APTX/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 1 }, "data": [ { "type": "GeneCombination", "id": "218" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/APTX/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/APTX/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/APTX/?format=api" } }, { "type": "Gene", "id": "BICD2", "attributes": { "go_molecular_function": [ "dynactin binding", "protein binding", "cytoskeletal anchor activity", "dynein light intermediate chain binding", "dynein complex binding" ], "pathway_id": [ "R-HSA-8856688", "R-HSA-6811436", "R-HSA-199991", "R-HSA-5653656", "R-HSA-6811442" ], "essential_gene": null, "status": "CU", "uniprot_acc": "Q8TD16", "ensembl_id": "ENSG00000185963", "entrez_id": "23299", "chromosome_number": "9", "lastmodified": "2021-10-18T11:00:44.531406" }, "relationships": { "variant_set": { "meta": { "count": 1 }, "data": [ { "type": "SmallVariant", "id": "652" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/BICD2/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/BICD2/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 1 }, "data": [ { "type": "GeneCombination", "id": "218" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/BICD2/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/BICD2/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/BICD2/?format=api" } }, { "type": "Gene", "id": "CACNA1H", "attributes": { "go_molecular_function": [ "['low voltage-gated calcium channel activity', 'voltage-gated ion channel activity', 'voltage-gated sodium channel activity', 'protein binding', 'metal ion binding', 'scaffold protein binding']" ], "pathway_id": [ "kegg_path:hsa04010", "kegg_path:hsa04020", "kegg_path:hsa04713", "kegg_path:hsa04925", "kegg_path:hsa04927", "kegg_path:hsa04929", "kegg_path:hsa04934", "R-HSA-1266738", "R-HSA-375165", "R-HSA-419037", "R-HSA-422475", "R-HSA-9675108" ], "essential_gene": "Non-essential", "status": "CU", "uniprot_acc": "O95180", "ensembl_id": "None", "entrez_id": "ENSG00000196557", "chromosome_number": "16", "lastmodified": "2021-10-18T11:00:44.379820" }, "relationships": { "variant_set": { "meta": { "count": 8 }, "data": [ { "type": "SmallVariant", "id": "653" }, { "type": "SmallVariant", "id": "674" }, { "type": "SmallVariant", "id": "690" }, { "type": "SmallVariant", "id": "1163" }, { "type": "SmallVariant", "id": "2061" }, { "type": "SmallVariant", "id": "2070" }, { "type": "SmallVariant", "id": "3065" }, { "type": "SmallVariant", "id": "3091" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/CACNA1H/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/CACNA1H/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 8 }, "data": [ { "type": "GeneCombination", "id": "218" }, { "type": "GeneCombination", "id": "220" }, { "type": "GeneCombination", "id": "222" }, { "type": "GeneCombination", "id": "373" }, { "type": "GeneCombination", "id": "711" }, { "type": "GeneCombination", "id": "715" }, { "type": "GeneCombination", "id": "1036" }, { "type": "GeneCombination", "id": "1028" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/CACNA1H/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/CACNA1H/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/CACNA1H/?format=api" } }, { "type": "Gene", "id": "CDH23", "attributes": { "go_molecular_function": [ "['calcium ion binding', 'protein binding', 'cadherin binding']" ], "pathway_id": [], "essential_gene": "Non-essential", "status": "CU", "uniprot_acc": "Q9H251", "ensembl_id": "None", "entrez_id": "ENSG00000107736", "chromosome_number": "10", "lastmodified": "2021-10-18T11:00:44.400908" }, "relationships": { "variant_set": { "meta": { "count": 22 }, "data": [ { "type": "SmallVariant", "id": "208" }, { "type": "SmallVariant", "id": "217" }, { "type": "SmallVariant", "id": "223" }, { "type": "SmallVariant", "id": "508" }, { "type": "SmallVariant", "id": "510" }, { "type": "SmallVariant", "id": "511" }, { "type": "SmallVariant", "id": "518" }, { "type": "SmallVariant", "id": "520" }, { "type": "SmallVariant", "id": "521" }, { "type": "SmallVariant", "id": "658" }, { "type": "SmallVariant", "id": "719" }, { "type": "SmallVariant", "id": "746" }, { "type": "SmallVariant", "id": "753" }, { "type": "SmallVariant", "id": "758" }, { "type": "SmallVariant", "id": "1055" }, { "type": "SmallVariant", "id": "1284" }, { "type": "SmallVariant", "id": "2234" }, { "type": "SmallVariant", "id": "2240" }, { "type": "SmallVariant", "id": "2390" }, { "type": "SmallVariant", "id": "2870" }, { "type": "SmallVariant", "id": "3543" }, { "type": "SmallVariant", "id": "3551" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/CDH23/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/CDH23/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 17 }, "data": [ { "type": "GeneCombination", "id": "81" }, { "type": "GeneCombination", "id": "75" }, { "type": "GeneCombination", "id": "79" }, { "type": "GeneCombination", "id": "240" }, { "type": "GeneCombination", "id": "171" }, { "type": "GeneCombination", "id": "238" }, { "type": "GeneCombination", "id": "218" }, { "type": "GeneCombination", "id": "231" }, { "type": "GeneCombination", "id": "239" }, { "type": "GeneCombination", "id": "345" }, { "type": "GeneCombination", "id": "408" }, { "type": "GeneCombination", "id": "814" }, { "type": "GeneCombination", "id": "813" }, { "type": "GeneCombination", "id": "812" }, { "type": "GeneCombination", "id": "810" }, { "type": "GeneCombination", "id": "1193" }, { "type": "GeneCombination", "id": "1195" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/CDH23/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/CDH23/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/CDH23/?format=api" } }, { "type": "Gene", "id": "CHRNE", "attributes": { "go_molecular_function": [ "cation transmembrane transporter activity", "acetylcholine receptor activity", "acetylcholine-gated cation-selective channel activity" ], "pathway_id": [ "R-HSA-112314", "R-HSA-629587", "R-HSA-622323", "R-HSA-622327", "R-HSA-181431", "R-HSA-112315", "R-HSA-112316", "kegg_path:hsa04080" ], "essential_gene": "Non-essential", "status": "CU", "uniprot_acc": "Q04844", "ensembl_id": "ENSG00000108556", "entrez_id": "1145", "chromosome_number": "17", "lastmodified": "2021-10-18T11:00:44.343440" }, "relationships": { "variant_set": { "meta": { "count": 1 }, "data": [ { "type": "SmallVariant", "id": "657" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/CHRNE/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/CHRNE/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 1 }, "data": [ { "type": "GeneCombination", "id": "218" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/CHRNE/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/CHRNE/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/CHRNE/?format=api" } }, { "type": "Gene", "id": "LAMB2", "attributes": { "go_molecular_function": [ "protein binding", "integrin binding", "structural molecule activity" ], "pathway_id": [ "R-HSA-3000171", "kegg_path:hsa04512", "kegg_path:hsa05165", "R-HSA-3000157", "R-HSA-8957275", "kegg_path:hsa05222", "R-HSA-3000178", "R-HSA-6806834", "R-HSA-9006934", "R-HSA-8874081", "R-HSA-162582", "kegg_path:hsa04510", "R-HSA-392499", "kegg_path:hsa04151", "R-HSA-381426", "kegg_path:hsa05200", "R-HSA-597592", "R-HSA-8875878", "kegg_path:hsa05146", "R-HSA-1474244", "kegg_path:hsa05145" ], "essential_gene": "Essential", "status": "CU", "uniprot_acc": "P55268", "ensembl_id": "ENSG00000172037", "entrez_id": "3913", "chromosome_number": "3", "lastmodified": "2021-10-18T11:00:44.935750" }, "relationships": { "variant_set": { "meta": { "count": 1 }, "data": [ { "type": "SmallVariant", "id": "659" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/LAMB2/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/LAMB2/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 1 }, "data": [ { "type": "GeneCombination", "id": "218" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/LAMB2/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/LAMB2/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/LAMB2/?format=api" } }, { "type": "Gene", "id": "MYH11", "attributes": { "go_molecular_function": [ "['calmodulin binding', 'structural constituent of muscle', 'protein binding', 'cytoskeletal motor activity', 'actin filament binding', 'ATP binding']" ], "pathway_id": [ "kegg_path:hsa04270", "kegg_path:hsa04530", "kegg_path:hsa04810", "kegg_path:hsa05130", "kegg_path:hsa04270", "kegg_path:hsa04530", "kegg_path:hsa04810", "kegg_path:hsa05130", "R-HSA-1266738", "R-HSA-162582", "R-HSA-194315", "R-HSA-195258", "R-HSA-2682334", "R-HSA-373755", "R-HSA-3928663", "R-HSA-397014", "R-HSA-400685", "R-HSA-416572", "R-HSA-422475", "R-HSA-445355", "R-HSA-5625740", "R-HSA-5625900", "R-HSA-5627117", "R-HSA-5627123", "R-HSA-9675108" ], "essential_gene": "Essential", "status": "CU", "uniprot_acc": "P35749", "ensembl_id": "None", "entrez_id": "ENSG00000133392", "chromosome_number": "16", "lastmodified": "2021-10-18T11:00:44.456965" }, "relationships": { "variant_set": { "meta": { "count": 2 }, "data": [ { "type": "SmallVariant", "id": "660" }, { "type": "SmallVariant", "id": "3770" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/MYH11/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/MYH11/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 2 }, "data": [ { "type": "GeneCombination", "id": "218" }, { "type": "GeneCombination", "id": "1277" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/MYH11/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/MYH11/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/MYH11/?format=api" } }, { "type": "Gene", "id": "NME8", "attributes": { "go_molecular_function": [ "microtubule binding" ], "pathway_id": [], "essential_gene": null, "status": "CU", "uniprot_acc": "Q8N427", "ensembl_id": "ENSG00000086288", "entrez_id": "51314", "chromosome_number": "7", "lastmodified": "2021-10-18T11:00:44.581326" }, "relationships": { "variant_set": { "meta": { "count": 1 }, "data": [ { "type": "SmallVariant", "id": "661" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/NME8/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/NME8/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 1 }, "data": [ { "type": "GeneCombination", "id": "218" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/NME8/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/NME8/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/NME8/?format=api" } }, { "type": "Gene", "id": "PRRT2", "attributes": { "go_molecular_function": [ "protein binding" ], "pathway_id": [], "essential_gene": null, "status": "CU", "uniprot_acc": "Q7Z6L0", "ensembl_id": "ENSG00000167371", "entrez_id": "112476", "chromosome_number": "16", "lastmodified": "2021-10-18T11:00:44.692423" }, "relationships": { "variant_set": { "meta": { "count": 2 }, "data": [ { "type": "SmallVariant", "id": "662" }, { "type": "SmallVariant", "id": "1817" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/PRRT2/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/PRRT2/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 2 }, "data": [ { "type": "GeneCombination", "id": "218" }, { "type": "GeneCombination", "id": "602" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/PRRT2/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/PRRT2/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/PRRT2/?format=api" } }, { "type": "Gene", "id": "QARS1", "attributes": { "go_molecular_function": [ "protein kinase binding", "protein binding", "nucleotide binding", "protein kinase inhibitor activity", "aminoacyl-tRNA ligase activity", "glutamine-tRNA ligase activity" ], "pathway_id": [ "R-HSA-2408522", "R-HSA-392499", "R-HSA-379726", "R-HSA-72766", "R-HSA-1430728", "R-HSA-379724", "kegg_path:hsa00970", "kegg_path:hsa01100", "R-HSA-379716", "R-HSA-71291" ], "essential_gene": null, "status": "CU", "uniprot_acc": "P47897", "ensembl_id": "ENSG00000172053", "entrez_id": "5859", "chromosome_number": "3", "lastmodified": "2021-10-18T11:00:44.890279" }, "relationships": { "variant_set": { "meta": { "count": 1 }, "data": [ { "type": "SmallVariant", "id": "663" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/QARS1/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/QARS1/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 1 }, "data": [ { "type": "GeneCombination", "id": "218" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/QARS1/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/QARS1/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/QARS1/?format=api" } }, { "type": "Gene", "id": "SLC26A10", "attributes": { "go_molecular_function": [ "oxalate transmembrane transporter activity", "bicarbonate transmembrane transporter activity", "antiporter activity", "anion:anion antiporter activity", "secondary active sulfate transmembrane transporter activity", "chloride transmembrane transporter activity", "sulfate transmembrane transporter activity" ], "pathway_id": [], "essential_gene": null, "status": "CU", "uniprot_acc": "Q8NG04", "ensembl_id": "ENSG00000135502", "entrez_id": "65012", "chromosome_number": "12", "lastmodified": "2021-10-18T11:00:44.774796" }, "relationships": { "variant_set": { "meta": { "count": 2 }, "data": [ { "type": "SmallVariant", "id": "664" }, { "type": "SmallVariant", "id": "665" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/SLC26A10/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/SLC26A10/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 1 }, "data": [ { "type": "GeneCombination", "id": "218" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/SLC26A10/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/SLC26A10/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/SLC26A10/?format=api" } }, { "type": "Gene", "id": "SOD1", "attributes": { "go_molecular_function": [ "['zinc ion binding', 'small GTPase binding', 'superoxide dismutase activity', 'protein binding', 'protein phosphatase 2B binding', 'copper ion binding', 'chaperone binding', 'identical protein binding']" ], "pathway_id": [ "kegg_path:hsa04146", "kegg_path:hsa04213", "kegg_path:hsa05014", "kegg_path:hsa05016", "kegg_path:hsa05020", "kegg_path:hsa05022", "R-HSA-109582", "R-HSA-114608", "R-HSA-1280215", "R-HSA-168256", "R-HSA-2262752", "R-HSA-3299685", "R-HSA-447115", "R-HSA-449147", "R-HSA-76002", "R-HSA-76005", "R-HSA-8950505", "R-HSA-8953897", "R-HSA-9020591" ], "essential_gene": "Non-essential", "status": "CU", "uniprot_acc": "P00441", "ensembl_id": "None", "entrez_id": "ENSG00000142168", "chromosome_number": "21", "lastmodified": "2021-10-18T11:00:44.427208" }, "relationships": { "variant_set": { "meta": { "count": 22 }, "data": [ { "type": "SmallVariant", "id": "1693" }, { "type": "SmallVariant", "id": "525" }, { "type": "SmallVariant", "id": "527" }, { "type": "SmallVariant", "id": "541" }, { "type": "SmallVariant", "id": "638" }, { "type": "SmallVariant", "id": "693" }, { "type": "SmallVariant", "id": "936" }, { "type": "SmallVariant", "id": "937" }, { "type": "SmallVariant", "id": "1379" }, { "type": "SmallVariant", "id": "1428" }, { "type": "SmallVariant", "id": "1709" }, { "type": "SmallVariant", "id": "2035" }, { "type": 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