Variant List
This API endpoint handles listing (/variants) and retrieval (/variants/<ID>/) of genetic variants from the database
GET /api/genes/SLC26A10/variants/?format=api
{ "data": [ { "type": "SmallVariant", "id": "664", "attributes": { "frequencies": { "KGP_genomes_maf": 0.0036, "KGP_genomes_AFR_maf": 0.0053, "KGP_genomes_AMR_maf": 0.0058, "KGP_genomes_EAS_maf": 0.0, "KGP_genomes_EUR_maf": 0.003, "KGP_genomes_SAS_maf": 0.0041, "gnomad_maf": 0.005218, "gnomad_AFR_maf": 0.004306, "gnomad_AMR_maf": 0.005205, "gnomad_ASJ_maf": 0.004864, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.002679, "gnomad_NFE_maf": 0.007297, "gnomad_OTH_maf": 0.007336, "gnomad_SAS_maf": 0.002613, "ESP_AA_maf": 0.004085, "ESP_EA_maf": 0.00686 }, "predictions": { "sift_prediction": "Tolerated", "pp2_hvar_prediction": "Unknown", "cadd_prediction": 3.834767, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 58018668, "genomic_position_hg38": 57624885, "chromosome": "12", "annotation_flag": "manually_attributed", "lastmodified": "2023-06-06T16:57:44.426707", "ref_allele": "T", "alt_allele": "G", "cdna_change": "c.1247T>G", "protein_change": "p.Leu416Arg", "transcript_id": null, "dbsnp_id": "rs111924104", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI330" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/664/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/664/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/664/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/664/gene/?format=api" }, "data": { "type": "Gene", "id": "SLC26A10" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/664/?format=api" } }, { "type": "SmallVariant", "id": "665", "attributes": { "frequencies": { "KGP_genomes_maf": 0.0016, "KGP_genomes_AFR_maf": 0.0008, "KGP_genomes_AMR_maf": 0.0029, "KGP_genomes_EAS_maf": 0.0, "KGP_genomes_EUR_maf": 0.001, "KGP_genomes_SAS_maf": 0.0041, "gnomad_maf": 0.003986, "gnomad_AFR_maf": 0.0009227, "gnomad_AMR_maf": 0.002667, "gnomad_ASJ_maf": 0.00408, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.00268, "gnomad_NFE_maf": 0.006092, "gnomad_OTH_maf": 0.005062, "gnomad_SAS_maf": 0.002356, "ESP_AA_maf": 0.001362, "ESP_EA_maf": 0.005581 }, "predictions": { "sift_prediction": null, "pp2_hvar_prediction": null, "cadd_prediction": 8.301635, "mutationtaster_prediction": "Disease causing" }, "status": "CU", "genomic_position_hg19": 58017860, "genomic_position_hg38": 57624077, "chromosome": "12", "annotation_flag": "manually_attributed", "lastmodified": "2023-06-06T16:57:44.433581", "ref_allele": "G", "alt_allele": "A", "cdna_change": "c.1206G>A", "protein_change": "p.Trp402Ter", "transcript_id": null, "dbsnp_id": "rs113207856", "variant_effect": "nonsense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI330" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/665/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/665/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/665/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/665/gene/?format=api" }, "data": { "type": "Gene", "id": "SLC26A10" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/665/?format=api" } } ], "meta": { "database_name": "OLIgogenic diseases DAtabase (OLIDA)", "resource_url": "olida.ibsquare.be", "api_release_year": "2021", "api_developer": [ [ "Arnau Dillen", "arnau.dillen@ulb.ac.be" ], [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_version": "0.3", "api_maintainers": [ [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_documentation": [ "olida.ibsquare.be/api/swagger", "olida.ibsquare.be/api/redoc" ], "copyright": "Copyright (c) 2025 · OLIDA All Rights Reserved.", "license": "CC Attribution-NonCommercial 4.0 International License", "ontologies": { "ORDO": "http://bioportal.bioontology.org/ontologies/ORDO", "GENO": "http://purl.obolibrary.org/obo/geno.owl", "MI": "http://purl.obolibrary.org/obo/mi.owl", "NCIT": "http://purl.obolibrary.org/obo/ncit.owl", "OGI": "http://purl.obolibrary.org/obo/ogi.owl", "OGG": "http://purl.obolibrary.org/obo/ogg.owl" }, "relevant_publications_doi": [ "10.1093/nar/gkv1068", "10.1093/database/baac023" ], "Variant serializers": [ "SmallVariantSerializer", "CopyNumberVariantSerializer" ], "size": 2 } }