Gene List
This API endpoint handles listing (/genes) and retrieval (/genes/<ID>/) of genes that are contained in the database due to their association to
genetic variants that are involved in at least one oligogenic combination in OLIDA.
GET /api/genecombinations/942/genes/?format=api
{ "data": [ { "type": "Gene", "id": "GLI3", "attributes": { "go_molecular_function": [ "['chromatin binding', 'RNA polymerase II cis-regulatory region sequence-specific DNA binding', 'beta-catenin binding', 'metal ion binding', 'histone acetyltransferase binding', 'sequence-specific double-stranded DNA binding', 'DNA-binding transcription factor activity, RNA polymerase II-specific', 'mediator complex binding', 'protein binding', 'RNA polymerase II transcription regulatory region sequence-specific DNA binding', 'histone deacetylase binding', 'DNA-binding transcription factor activity']" ], "pathway_id": [ "kegg_path:hsa04024", "kegg_path:hsa04340", "kegg_path:hsa05200", "kegg_path:hsa05217", "R-HSA-162582", "R-HSA-212436", "R-HSA-5358351", "R-HSA-5610785", "R-HSA-5610787", "R-HSA-5632684", "R-HSA-5635851", "R-HSA-73857", "R-HSA-74160", "R-HSA-8878166", "R-HSA-8940973", "R-HSA-8941326" ], "essential_gene": "Essential", "status": "CU", "uniprot_acc": "P10071", "ensembl_id": "None", "entrez_id": "ENSG00000106571", "chromosome_number": "7", "lastmodified": "2021-10-18T11:00:44.894304" }, "relationships": { "variant_set": { "meta": { "count": 16 }, "data": [ { "type": "SmallVariant", "id": "726" }, { "type": "SmallVariant", "id": "731" }, { "type": "SmallVariant", "id": "732" }, { "type": "SmallVariant", "id": "741" }, { "type": "SmallVariant", "id": "900" }, { "type": "SmallVariant", "id": "916" }, { "type": "SmallVariant", "id": "1300" }, { "type": "SmallVariant", "id": "2769" }, { "type": "SmallVariant", "id": "2834" }, { "type": "SmallVariant", "id": "2847" }, { "type": "SmallVariant", "id": "2889" }, { "type": "SmallVariant", "id": "2963" }, { "type": "SmallVariant", "id": "3180" }, { "type": "SmallVariant", "id": "3214" }, { "type": "SmallVariant", "id": "3230" }, { "type": "SmallVariant", "id": "3324" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/GLI3/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/GLI3/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 16 }, "data": [ { "type": "GeneCombination", "id": "236" }, { "type": "GeneCombination", "id": "232" }, { "type": "GeneCombination", "id": "234" }, { "type": "GeneCombination", "id": "287" }, { "type": "GeneCombination", "id": "279" }, { "type": "GeneCombination", "id": "410" }, { "type": "GeneCombination", "id": "926" }, { "type": "GeneCombination", "id": "942" }, { "type": "GeneCombination", "id": "957" }, { "type": "GeneCombination", "id": "986" }, { "type": "GeneCombination", "id": "1061" }, { "type": "GeneCombination", "id": "1081" }, { "type": "GeneCombination", "id": "1115" }, { "type": "GeneCombination", "id": "1118" }, { "type": "GeneCombination", "id": "1120" }, { "type": "GeneCombination", "id": "1074" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/GLI3/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/GLI3/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/GLI3/?format=api" } }, { "type": "Gene", "id": "IL17RD", "attributes": { "go_molecular_function": [ "['interleukin-17 receptor activity']" ], "pathway_id": [ "R-HSA-162582", "R-HSA-5673001", "R-HSA-5674135", "R-HSA-5683057", "R-HSA-5684996" ], "essential_gene": "Non-essential", "status": "CU", "uniprot_acc": "Q8NFM7", "ensembl_id": "None", "entrez_id": "ENSG00000144730", "chromosome_number": "3", "lastmodified": "2021-10-18T11:00:44.954610" }, "relationships": { "variant_set": { "meta": { "count": 18 }, "data": [ { "type": "SmallVariant", "id": "770" }, { "type": "SmallVariant", "id": "776" }, { "type": "SmallVariant", "id": "778" }, { "type": "SmallVariant", "id": "780" }, { "type": "SmallVariant", "id": "800" }, { "type": "SmallVariant", "id": "802" }, { "type": "SmallVariant", "id": "1831" }, { "type": "SmallVariant", "id": "1879" }, { "type": "SmallVariant", "id": "1897" }, { "type": "SmallVariant", "id": "2676" }, { "type": "SmallVariant", "id": "2780" }, { "type": "SmallVariant", "id": "2830" }, { "type": "SmallVariant", "id": "2833" }, { "type": "SmallVariant", "id": "2901" }, { "type": "SmallVariant", "id": "2977" }, { "type": "SmallVariant", "id": "3360" }, { "type": "SmallVariant", "id": "3382" }, { "type": "SmallVariant", "id": "3469" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/IL17RD/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/IL17RD/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 15 }, "data": [ { "type": "GeneCombination", "id": "242" }, { "type": "GeneCombination", "id": "245" }, { "type": "GeneCombination", "id": "251" }, { "type": "GeneCombination", "id": "625" }, { "type": "GeneCombination", "id": "671" }, { "type": "GeneCombination", "id": "891" }, { "type": "GeneCombination", "id": "929" }, { "type": "GeneCombination", "id": "635" }, { "type": "GeneCombination", "id": "942" }, { "type": "GeneCombination", "id": "243" }, { "type": "GeneCombination", "id": "962" }, { "type": "GeneCombination", "id": "993" }, { "type": "GeneCombination", "id": "244" }, { "type": "GeneCombination", "id": "1134" }, { "type": "GeneCombination", "id": "1164" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/IL17RD/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/IL17RD/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/IL17RD/?format=api" } } ], "meta": { "database_name": "OLIgogenic diseases DAtabase (OLIDA)", "resource_url": "olida.ibsquare.be", "api_release_year": "2021", "api_developer": [ [ "Arnau Dillen", "arnau.dillen@ulb.ac.be" ], [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_version": "0.3", "api_maintainers": [ [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_documentation": [ "olida.ibsquare.be/api/swagger", "olida.ibsquare.be/api/redoc" ], "copyright": "Copyright (c) 2024 · OLIDA All Rights Reserved.", "license": "CC Attribution-NonCommercial 4.0 International License", "ontologies": { "ORDO": "http://bioportal.bioontology.org/ontologies/ORDO", "GENO": "http://purl.obolibrary.org/obo/geno.owl", "MI": "http://purl.obolibrary.org/obo/mi.owl", "NCIT": "http://purl.obolibrary.org/obo/ncit.owl", "OGI": "http://purl.obolibrary.org/obo/ogi.owl", "OGG": "http://purl.obolibrary.org/obo/ogg.owl" }, "relevant_publications_doi": [ "10.1093/nar/gkv1068", "10.1093/database/baac023" ], "size": 2 } }