Gene List
This API endpoint handles listing (/genes) and retrieval (/genes/<ID>/) of genes that are contained in the database due to their association to
genetic variants that are involved in at least one oligogenic combination in OLIDA.
GET /api/genecombinations/859/genes/?format=api
{ "data": [ { "type": "Gene", "id": "DUSP6", "attributes": { "go_molecular_function": [ "['MAP kinase tyrosine/serine/threonine phosphatase activity', 'protein tyrosine phosphatase activity', 'phosphoprotein phosphatase activity', 'protein tyrosine/threonine phosphatase activity', 'protein binding', 'protein tyrosine/serine/threonine phosphatase activity', 'protein serine/threonine phosphatase activity']" ], "pathway_id": [ "kegg_path:hsa04010", "kegg_path:hsa05202", "kegg_path:hsa05221", "kegg_path:hsa04010", "kegg_path:hsa05202", "kegg_path:hsa05221", "R-HSA-112409", "R-HSA-1280215", "R-HSA-162582", "R-HSA-1643685", "R-HSA-166016", "R-HSA-166058", "R-HSA-166166", "R-HSA-166520", "R-HSA-168138", "R-HSA-168142", "R-HSA-168164", "R-HSA-168176", "R-HSA-168179", "R-HSA-168181", "R-HSA-168188", "R-HSA-168249", "R-HSA-168256", "R-HSA-168898", "R-HSA-181438", "R-HSA-187037", "R-HSA-198725", "R-HSA-198753", "R-HSA-202670", "R-HSA-448424", "R-HSA-449147", "R-HSA-450282", "R-HSA-450294", "R-HSA-5663202", "R-HSA-5673001", "R-HSA-5675221", "R-HSA-5683057", "R-HSA-5684996", "R-HSA-6802957", "R-HSA-9006934", "R-HSA-937061", "R-HSA-9652817", "R-HSA-975138", "R-HSA-975155", "R-HSA-975871" ], "essential_gene": "Essential", "status": "CU", "uniprot_acc": "Q16828", "ensembl_id": "None", "entrez_id": "ENSG00000139318", "chromosome_number": "12", "lastmodified": "2021-10-18T11:00:44.305694" }, "relationships": { "variant_set": { "meta": { "count": 6 }, "data": [ { "type": "SmallVariant", "id": "768" }, { "type": "SmallVariant", "id": "808" }, { "type": "SmallVariant", "id": "810" }, { "type": "SmallVariant", "id": "812" }, { "type": "SmallVariant", "id": "2581" }, { "type": "SmallVariant", "id": "3236" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/DUSP6/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/DUSP6/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 5 }, "data": [ { "type": "GeneCombination", "id": "241" }, { "type": "GeneCombination", "id": "253" }, { "type": "GeneCombination", "id": "254" }, { "type": "GeneCombination", "id": "859" }, { "type": "GeneCombination", "id": "1083" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/DUSP6/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/DUSP6/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/DUSP6/?format=api" } }, { "type": "Gene", "id": "PROKR2", "attributes": { "go_molecular_function": [ "['neuropeptide Y receptor activity', 'protein binding', 'G protein-coupled receptor activity']" ], "pathway_id": [ "R-HSA-162582", "R-HSA-372790", "R-HSA-373076", "R-HSA-375276", "R-HSA-388396", "R-HSA-416476", "R-HSA-500792" ], "essential_gene": "Essential", "status": "CU", "uniprot_acc": "None", "ensembl_id": "None", "entrez_id": "ENSG00000101292", "chromosome_number": "20", "lastmodified": "2021-10-18T11:00:44.395103" }, "relationships": { "variant_set": { "meta": { "count": 38 }, "data": [ { "type": "SmallVariant", "id": "26" }, { "type": "SmallVariant", "id": "78" }, { "type": "SmallVariant", "id": "331" }, { "type": "SmallVariant", "id": "383" }, { "type": "SmallVariant", "id": "397" }, { "type": "SmallVariant", "id": "400" }, { "type": "SmallVariant", "id": "402" }, { "type": "SmallVariant", "id": "857" }, { "type": "SmallVariant", "id": "1057" }, { "type": "SmallVariant", "id": "1798" }, { "type": "SmallVariant", "id": "1825" }, { "type": "SmallVariant", "id": "1826" }, { "type": "SmallVariant", "id": "1857" }, { "type": "SmallVariant", "id": "1864" }, { "type": "SmallVariant", "id": "1888" }, { "type": "SmallVariant", "id": "1892" }, { "type": "SmallVariant", "id": "1898" }, { "type": "SmallVariant", "id": "1901" }, { "type": "SmallVariant", "id": "1931" }, { "type": "SmallVariant", "id": "2398" }, { "type": "SmallVariant", "id": "2399" }, { "type": "SmallVariant", "id": "2502" }, { "type": "SmallVariant", "id": "2513" }, { "type": "SmallVariant", "id": "2517" }, { "type": "SmallVariant", "id": "2577" }, { "type": "SmallVariant", "id": "2579" }, { "type": "SmallVariant", "id": "2662" }, { "type": "SmallVariant", "id": "2678" }, { "type": "SmallVariant", "id": "2691" }, { "type": "SmallVariant", "id": "2696" }, { "type": "SmallVariant", "id": "2699" }, { "type": "SmallVariant", "id": "2719" }, { "type": "SmallVariant", "id": "2721" }, { "type": "SmallVariant", "id": "2725" }, { "type": "SmallVariant", "id": "2768" }, { "type": "SmallVariant", "id": "2829" }, { "type": "SmallVariant", "id": "2831" }, { "type": "SmallVariant", "id": "3175" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/PROKR2/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/PROKR2/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 52 }, "data": [ { "type": "GeneCombination", "id": "10" }, { "type": "GeneCombination", "id": "31" }, { "type": "GeneCombination", "id": "116" }, { "type": "GeneCombination", "id": "265" }, { "type": "GeneCombination", "id": "257" }, { "type": "GeneCombination", "id": "442" }, { "type": "GeneCombination", "id": "478" }, { "type": "GeneCombination", "id": "596" }, { "type": "GeneCombination", "id": "616" }, { "type": "GeneCombination", "id": "617" }, { "type": "GeneCombination", "id": "619" }, { "type": "GeneCombination", "id": "622" }, { "type": "GeneCombination", "id": "626" }, { "type": "GeneCombination", "id": "629" }, { "type": "GeneCombination", "id": "630" }, { "type": "GeneCombination", "id": "631" }, { "type": "GeneCombination", "id": "632" }, { "type": "GeneCombination", "id": "637" }, { "type": "GeneCombination", "id": "653" }, { "type": "GeneCombination", "id": "656" }, { "type": "GeneCombination", "id": "662" }, { "type": "GeneCombination", "id": "663" }, { "type": "GeneCombination", "id": "817" }, { "type": "GeneCombination", "id": "852" }, { "type": "GeneCombination", "id": "854" }, { "type": "GeneCombination", "id": "859" }, { "type": "GeneCombination", "id": "606" }, { "type": "GeneCombination", "id": "189" }, { "type": "GeneCombination", "id": "858" }, { "type": "GeneCombination", "id": "892" }, { "type": "GeneCombination", "id": "896" }, { "type": "GeneCombination", "id": "898" }, { "type": "GeneCombination", "id": "136" }, { "type": "GeneCombination", "id": "902" }, { "type": "GeneCombination", "id": "903" }, { "type": "GeneCombination", "id": "904" }, { "type": "GeneCombination", "id": "906" }, { "type": "GeneCombination", "id": "910" }, { "type": "GeneCombination", "id": "90" }, { "type": "GeneCombination", "id": "941" }, { "type": "GeneCombination", "id": "635" }, { "type": "GeneCombination", "id": "947" }, { "type": "GeneCombination", "id": "971" }, { "type": "GeneCombination", "id": "1061" }, { "type": "GeneCombination", "id": "1069" }, { "type": "GeneCombination", "id": "1080" }, { "type": "GeneCombination", "id": "1084" }, { "type": "GeneCombination", "id": "1088" }, { "type": "GeneCombination", "id": "1091" }, { "type": "GeneCombination", "id": "1092" }, { "type": "GeneCombination", "id": "1102" }, { "type": "GeneCombination", "id": "1111" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/PROKR2/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/PROKR2/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/PROKR2/?format=api" } }, { "type": "Gene", "id": "SEMA7A", "attributes": { "go_molecular_function": [ "['integrin binding', 'semaphorin receptor binding', 'protein binding', 'chemorepellent activity']" ], "pathway_id": [ "kegg_path:hsa04360", "R-HSA-1266738", "R-HSA-373755", "R-HSA-416700", "R-HSA-422475", "R-HSA-9675108" ], "essential_gene": "Non-essential", "status": "CU", "uniprot_acc": "O75326", "ensembl_id": "None", "entrez_id": "ENSG00000138623", "chromosome_number": "15", "lastmodified": "2021-10-18T11:00:44.948272" }, "relationships": { "variant_set": { "meta": { "count": 10 }, "data": [ { "type": "SmallVariant", "id": "775" }, { "type": "SmallVariant", "id": "1895" }, { "type": "SmallVariant", "id": "1940" }, { "type": "SmallVariant", "id": "1965" }, { "type": "SmallVariant", "id": "1972" }, { "type": "SmallVariant", "id": "2580" }, { "type": "SmallVariant", "id": "2673" }, { "type": "SmallVariant", "id": "2711" }, { "type": "SmallVariant", "id": "2733" }, { "type": "SmallVariant", "id": "2961" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/SEMA7A/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/SEMA7A/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 9 }, "data": [ { "type": "GeneCombination", "id": "242" }, { "type": "GeneCombination", "id": "633" }, { "type": "GeneCombination", "id": "657" }, { "type": "GeneCombination", "id": "673" }, { "type": "GeneCombination", "id": "677" }, { "type": "GeneCombination", "id": "859" }, { "type": "GeneCombination", "id": "890" }, { "type": "GeneCombination", "id": "901" }, { "type": "GeneCombination", "id": "985" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/SEMA7A/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/SEMA7A/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/SEMA7A/?format=api" } } ], "meta": { "database_name": "OLIgogenic diseases DAtabase (OLIDA)", "resource_url": "olida.ibsquare.be", "api_release_year": "2021", "api_developer": [ [ "Arnau Dillen", "arnau.dillen@ulb.ac.be" ], [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_version": "0.3", "api_maintainers": [ [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_documentation": [ "olida.ibsquare.be/api/swagger", "olida.ibsquare.be/api/redoc" ], "copyright": "Copyright (c) 2025 · OLIDA All Rights Reserved.", "license": "CC Attribution-NonCommercial 4.0 International License", "ontologies": { "ORDO": "http://bioportal.bioontology.org/ontologies/ORDO", "GENO": "http://purl.obolibrary.org/obo/geno.owl", "MI": "http://purl.obolibrary.org/obo/mi.owl", "NCIT": "http://purl.obolibrary.org/obo/ncit.owl", "OGI": "http://purl.obolibrary.org/obo/ogi.owl", "OGG": "http://purl.obolibrary.org/obo/ogg.owl" }, "relevant_publications_doi": [ "10.1093/nar/gkv1068", "10.1093/database/baac023" ], "size": 3 } }