Gene List
This API endpoint handles listing (/genes) and retrieval (/genes/<ID>/) of genes that are contained in the database due to their association to
genetic variants that are involved in at least one oligogenic combination in OLIDA.
GET /api/genecombinations/737/genes/?format=api
{ "data": [ { "type": "Gene", "id": "AR", "attributes": { "go_molecular_function": [ "['zinc ion binding', 'transcription cis-regulatory region binding', 'nuclear receptor activity', 'steroid binding', 'DNA-binding transcription factor activity, RNA polymerase II-specific', 'RNA polymerase II-specific DNA-binding transcription factor binding', 'protein binding', 'DNA-binding transcription factor activity', 'POU domain binding', 'androgen binding', 'transcription coactivator binding', 'chromatin binding', 'ATPase binding', 'beta-catenin binding', 'RNA polymerase II general transcription initiation factor binding', 'RNA polymerase II cis-regulatory region sequence-specific DNA binding', 'enzyme binding', 'DNA-binding transcription activator activity, RNA polymerase II-specific', 'signaling receptor binding']" ], "pathway_id": [ "kegg_path:hsa04114", "kegg_path:hsa05200", "kegg_path:hsa05215", "R-HSA-162582", "R-HSA-194315", "R-HSA-195258", "R-HSA-212436", "R-HSA-2262752", "R-HSA-2990846", "R-HSA-3108232", "R-HSA-3371497", "R-HSA-383280", "R-HSA-392499", "R-HSA-4090294", "R-HSA-5625740", "R-HSA-5625886", "R-HSA-5688426", "R-HSA-5689880", "R-HSA-597592", "R-HSA-73857", "R-HSA-74160", "R-HSA-8878166", "R-HSA-8940973", "R-HSA-8941326", "R-HSA-8953897" ], "essential_gene": "Non-essential", "status": "CU", "uniprot_acc": "P10275", "ensembl_id": "None", "entrez_id": "ENSG00000169083", "chromosome_number": "X", "lastmodified": "2021-10-18T11:00:44.665425" }, "relationships": { "variant_set": { "meta": { "count": 15 }, "data": [ { "type": "SmallVariant", "id": "580" }, { "type": "CopyNumberVariant", "id": "2184" }, { "type": "SmallVariant", "id": "646" }, { "type": "SmallVariant", "id": "2159" }, { "type": "SmallVariant", "id": "2164" }, { "type": "SmallVariant", "id": "2168" }, { "type": "SmallVariant", "id": "2171" }, { "type": "SmallVariant", "id": "2173" }, { "type": "SmallVariant", "id": "2175" }, { "type": "SmallVariant", "id": "2177" }, { "type": "SmallVariant", "id": "2180" }, { "type": "SmallVariant", "id": "2182" }, { "type": "SmallVariant", "id": "3248" }, { "type": "SmallVariant", "id": "3292" }, { "type": "SmallVariant", "id": "3311" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/AR/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/AR/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 15 }, "data": [ { "type": "GeneCombination", "id": "200" }, { "type": "GeneCombination", "id": "217" }, { "type": "GeneCombination", "id": "736" }, { "type": "GeneCombination", "id": "737" }, { "type": "GeneCombination", "id": "738" }, { "type": "GeneCombination", "id": "739" }, { "type": "GeneCombination", "id": "740" }, { "type": "GeneCombination", "id": "741" }, { "type": "GeneCombination", "id": "742" }, { "type": "GeneCombination", "id": "743" }, { "type": "GeneCombination", "id": "744" }, { "type": "GeneCombination", "id": "745" }, { "type": "GeneCombination", "id": "1089" }, { "type": "GeneCombination", "id": "1108" }, { "type": "GeneCombination", "id": "1114" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/AR/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/AR/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/AR/?format=api" } }, { "type": "Gene", "id": "BMP4", "attributes": { "go_molecular_function": [ "['growth factor activity', 'BMP receptor binding', 'protein binding', 'chemoattractant activity', 'heparin binding', 'co-receptor binding', 'cytokine activity']" ], "pathway_id": [ "kegg_path:hsa04060", "kegg_path:hsa04350", "kegg_path:hsa04390", "kegg_path:hsa04550", "kegg_path:hsa04919", "kegg_path:hsa05200", "kegg_path:hsa05217", "kegg_path:hsa05418", "R-HSA-1474244", "R-HSA-1566948", "R-HSA-2129379", "R-HSA-381426", "R-HSA-392499", "R-HSA-597592", "R-HSA-8957275", "kegg_path:hsa04060", "kegg_path:hsa04350", "kegg_path:hsa04390", "kegg_path:hsa04550", "kegg_path:hsa04919", "kegg_path:hsa05200", "kegg_path:hsa05217", "kegg_path:hsa05418" ], "essential_gene": "Essential", "status": "CU", "uniprot_acc": "P12644", "ensembl_id": "None", "entrez_id": "ENSG00000125378", "chromosome_number": "14", "lastmodified": "2021-10-18T11:00:44.362577" }, "relationships": { "variant_set": { "meta": { "count": 4 }, "data": [ { "type": "SmallVariant", "id": "864" }, { "type": "SmallVariant", "id": "1383" }, { "type": "SmallVariant", "id": "2165" }, { "type": "SmallVariant", "id": "2775" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/BMP4/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/BMP4/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 4 }, "data": [ { "type": "GeneCombination", "id": "269" }, { "type": "GeneCombination", "id": "436" }, { "type": "GeneCombination", "id": "737" }, { "type": "GeneCombination", "id": "928" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/BMP4/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/BMP4/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/BMP4/?format=api" } }, { "type": "Gene", "id": "MAP3K1", "attributes": { "go_molecular_function": [ "['protein kinase activity', 'zinc ion binding', 'protein kinase binding', 'protein serine/threonine kinase activity', 'ATP binding', 'MAP kinase kinase kinase activity', 'protein serine kinase activity', 'protein binding', 'protein serine/threonine/tyrosine kinase activity']" ], "pathway_id": [ "kegg_path:hsa04010", "kegg_path:hsa04120", "kegg_path:hsa04530", "kegg_path:hsa04622", "kegg_path:hsa04722", "kegg_path:hsa04912", "kegg_path:hsa04935", "kegg_path:hsa05161", "kegg_path:hsa05166", "R-HSA-166016", "R-HSA-166058", "R-HSA-168138", "R-HSA-168142", "R-HSA-168176", "R-HSA-168179", "R-HSA-168181", "R-HSA-168188", "R-HSA-168249", "R-HSA-168256", "R-HSA-168898", "R-HSA-168928", "R-HSA-181438", "R-HSA-2454202", "R-HSA-2871796", "R-HSA-933542", "R-HSA-975138", "R-HSA-975155", "R-HSA-975871" ], "essential_gene": "Non-essential", "status": "CU", "uniprot_acc": "Q13233", "ensembl_id": "None", "entrez_id": "ENSG00000095015", "chromosome_number": "5", "lastmodified": "2021-10-18T11:00:44.832050" }, "relationships": { "variant_set": { "meta": { "count": 5 }, "data": [ { "type": "SmallVariant", "id": "1696" }, { "type": "SmallVariant", "id": "2167" }, { "type": "SmallVariant", "id": "3161" }, { "type": "SmallVariant", "id": "3173" }, { "type": "SmallVariant", "id": "3289" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/MAP3K1/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/MAP3K1/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 5 }, "data": [ { "type": "GeneCombination", "id": "554" }, { "type": "GeneCombination", "id": "737" }, { "type": "GeneCombination", "id": "1055" }, { "type": "GeneCombination", "id": "1060" }, { "type": "GeneCombination", "id": "1107" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/MAP3K1/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/MAP3K1/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/MAP3K1/?format=api" } }, { "type": "Gene", "id": "POR", "attributes": { "go_molecular_function": [ "['NADPH-hemoprotein reductase activity', 'nitric oxide dioxygenase activity', 'hydrolase activity', 'enzyme binding', 'oxidoreductase activity', 'NADP binding', 'flavin adenine dinucleotide binding', 'electron transfer activity', 'protein binding', 'cytochrome-b5 reductase activity, acting on NAD(P)H', 'iron-cytochrome-c reductase activity', 'FMN binding']" ], "pathway_id": [ "R-HSA-1430728", "R-HSA-211859", "R-HSA-211897", "R-HSA-211945", "R-HSA-1430728", "R-HSA-211859", "R-HSA-211897", "R-HSA-211945" ], "essential_gene": "Essential", "status": "CU", "uniprot_acc": "P16435", "ensembl_id": "None", "entrez_id": "ENSG00000127948", "chromosome_number": "7", "lastmodified": "2021-10-18T11:00:44.656385" }, "relationships": { "variant_set": { "meta": { "count": 7 }, "data": [ { "type": "SmallVariant", "id": "707" }, { "type": "SmallVariant", "id": "1205" }, { "type": "SmallVariant", "id": "2166" }, { "type": "SmallVariant", "id": "2178" }, { "type": "SmallVariant", "id": "3205" }, { "type": "SmallVariant", "id": "3315" }, { "type": "SmallVariant", "id": "3708" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/POR/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/POR/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 7 }, "data": [ { "type": "GeneCombination", "id": "226" }, { "type": "GeneCombination", "id": "385" }, { "type": "GeneCombination", "id": "737" }, { "type": "GeneCombination", "id": "742" }, { "type": "GeneCombination", "id": "1070" }, { "type": "GeneCombination", "id": "1115" }, { "type": "GeneCombination", "id": "1255" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/POR/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/POR/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/POR/?format=api" } } ], "meta": { "database_name": "OLIgogenic diseases DAtabase (OLIDA)", "resource_url": "olida.ibsquare.be", "api_release_year": "2021", "api_developer": [ [ "Arnau Dillen", "arnau.dillen@ulb.ac.be" ], [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_version": "0.3", "api_maintainers": [ [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_documentation": [ "olida.ibsquare.be/api/swagger", "olida.ibsquare.be/api/redoc" ], "copyright": "Copyright (c) 2025 · OLIDA All Rights Reserved.", "license": "CC Attribution-NonCommercial 4.0 International License", "ontologies": { "ORDO": "http://bioportal.bioontology.org/ontologies/ORDO", "GENO": "http://purl.obolibrary.org/obo/geno.owl", "MI": "http://purl.obolibrary.org/obo/mi.owl", "NCIT": "http://purl.obolibrary.org/obo/ncit.owl", "OGI": "http://purl.obolibrary.org/obo/ogi.owl", "OGG": "http://purl.obolibrary.org/obo/ogg.owl" }, "relevant_publications_doi": [ "10.1093/nar/gkv1068", "10.1093/database/baac023" ], "size": 4 } }