Gene List
This API endpoint handles listing (/genes) and retrieval (/genes/<ID>/) of genes that are contained in the database due to their association to
genetic variants that are involved in at least one oligogenic combination in OLIDA.
GET /api/genecombinations/641/genes/?format=api
{ "data": [ { "type": "Gene", "id": "DLX5", "attributes": { "go_molecular_function": [ "DNA-binding transcription activator activity, RNA polymerase II-specific", "transcription cis-regulatory region binding", "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "HMG box domain binding", "DNA-binding transcription factor activity, RNA polymerase II-specific", "DNA binding" ], "pathway_id": [ "kegg_path:hsa04550", "kegg_path:hsa04550", "R-HSA-73857", "R-HSA-212436", "R-HSA-8878166", "R-HSA-74160", "R-HSA-8939902" ], "essential_gene": "Essential", "status": "CU", "uniprot_acc": "P56178", "ensembl_id": "ENSG00000105880", "entrez_id": "1749", "chromosome_number": "7", "lastmodified": "2021-10-18T11:00:44.511351" }, "relationships": { "variant_set": { "meta": { "count": 2 }, "data": [ { "type": "SmallVariant", "id": "1893" }, { "type": "SmallVariant", "id": "1908" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/DLX5/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/DLX5/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 3 }, "data": [ { "type": "GeneCombination", "id": "631" }, { "type": "GeneCombination", "id": "641" }, { "type": "GeneCombination", "id": "666" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/DLX5/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/DLX5/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/DLX5/?format=api" } }, { "type": "Gene", "id": "EGF", "attributes": { "go_molecular_function": [ "calcium ion binding", "protein binding", "epidermal growth factor receptor binding", "transmembrane receptor protein tyrosine kinase activator activity", "growth factor activity", "guanyl-nucleotide exchange factor activity" ], "pathway_id": [ "R-HSA-1236382", "R-HSA-5663202", "kegg_path:hsa05200", "kegg_path:hsa04540", "R-HSA-9665348", "R-HSA-179812", "kegg_path:hsa04020", "R-HSA-162582", "R-HSA-1963642", "R-HSA-9013507", "R-HSA-2219530", "R-HSA-182971", "kegg_path:hsa04012", "R-HSA-9006934", "R-HSA-157118", "R-HSA-76002", "kegg_path:hsa05235", "R-HSA-109582", "R-HSA-8848021", "R-HSA-9664565", "kegg_path:hsa04015", "R-HSA-199418", "R-HSA-5653656", "R-HSA-1251932", "kegg_path:hsa05210", "R-HSA-5673001", "kegg_path:hsa05219", "R-HSA-1250196", "R-HSA-1227986", "R-HSA-1236394", "R-HSA-1257604", "R-HSA-9006925", "R-HSA-177929", "kegg_path:hsa05214", "R-HSA-1227990", "R-HSA-5638303", "R-HSA-5637812", "R-HSA-76005", "R-HSA-8863795", "kegg_path:hsa05165", "kegg_path:hsa05215", "R-HSA-6811558", "kegg_path:hsa04014", "R-HSA-5683057", "kegg_path:hsa04066", "R-HSA-1643713", "R-HSA-5637810", "kegg_path:hsa04810", "kegg_path:hsa05231", "R-HSA-2219528", "R-HSA-180292", "R-HSA-180336", "kegg_path:hsa04068", "R-HSA-1963640", "R-HSA-8939211", "kegg_path:hsa01521", "R-HSA-6785631", "R-HSA-8856825", "kegg_path:hsa04510", "R-HSA-5637815", "kegg_path:hsa05226", "R-HSA-9006927", "R-HSA-9634638", "kegg_path:hsa05218", "kegg_path:hsa04072", "R-HSA-114608", "R-HSA-8856828", "kegg_path:hsa05224", "R-HSA-9012852", "R-HSA-212718", "kegg_path:hsa04010", "kegg_path:hsa05213", "kegg_path:hsa05223", "R-HSA-5684996", "R-HSA-9009391", "kegg_path:hsa04630", "kegg_path:hsa05160", "R-HSA-5638302", "R-HSA-9665686", "R-HSA-199991", "R-HSA-8847993", "R-HSA-9006931", "kegg_path:hsa05212", "kegg_path:hsa04151", "R-HSA-1643685" ], "essential_gene": "Non-essential", "status": "CU", "uniprot_acc": "P01133", "ensembl_id": "ENSG00000138798", "entrez_id": "1950", "chromosome_number": "4", "lastmodified": "2021-10-18T11:00:44.414266" }, "relationships": { "variant_set": { "meta": { "count": 5 }, "data": [ { "type": "SmallVariant", "id": "1850" }, { "type": "SmallVariant", "id": "1883" }, { "type": "SmallVariant", "id": "1909" }, { "type": "SmallVariant", "id": "1956" }, { "type": "SmallVariant", "id": "2161" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/EGF/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/EGF/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 6 }, "data": [ { "type": "GeneCombination", "id": "614" }, { "type": "GeneCombination", "id": "627" }, { "type": "GeneCombination", "id": "641" }, { "type": "GeneCombination", "id": "669" }, { "type": "GeneCombination", "id": "676" }, { "type": "GeneCombination", "id": "736" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/EGF/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/EGF/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/EGF/?format=api" } }, { "type": "Gene", "id": "PLXNA1", "attributes": { "go_molecular_function": [ "['semaphorin receptor activity']" ], "pathway_id": [ "kegg_path:hsa04360", "R-HSA-1266738", "R-HSA-373755", "R-HSA-399954", "R-HSA-399955", "R-HSA-399956", "R-HSA-416700", "R-HSA-422475", "R-HSA-9675108" ], "essential_gene": "Non-essential", "status": "CU", "uniprot_acc": "Q9UIW2", "ensembl_id": "None", "entrez_id": "ENSG00000114554", "chromosome_number": "3", "lastmodified": "2021-10-18T11:00:44.601577" }, "relationships": { "variant_set": { "meta": { "count": 13 }, "data": [ { "type": "SmallVariant", "id": "785" }, { "type": "SmallVariant", "id": "1409" }, { "type": "SmallVariant", "id": "1410" }, { "type": "SmallVariant", "id": "1411" }, { "type": "SmallVariant", "id": "1412" }, { "type": "SmallVariant", "id": "1414" }, { "type": "SmallVariant", "id": "1418" }, { "type": "SmallVariant", "id": "1421" }, { "type": "SmallVariant", "id": "1423" }, { "type": "SmallVariant", "id": "1910" }, { "type": "SmallVariant", "id": "1969" }, { "type": "SmallVariant", "id": "2967" }, { "type": "SmallVariant", "id": "2992" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/PLXNA1/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/PLXNA1/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 12 }, "data": [ { "type": "GeneCombination", "id": "246" }, { "type": "GeneCombination", "id": "442" }, { "type": "GeneCombination", "id": "443" }, { "type": "GeneCombination", "id": "444" }, { "type": "GeneCombination", "id": "445" }, { "type": "GeneCombination", "id": "446" }, { "type": "GeneCombination", "id": "447" }, { "type": "GeneCombination", "id": "448" }, { "type": "GeneCombination", "id": "641" }, { "type": "GeneCombination", "id": "675" }, { "type": "GeneCombination", "id": "988" }, { "type": "GeneCombination", "id": "999" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/PLXNA1/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/PLXNA1/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/PLXNA1/?format=api" } } ], "meta": { "database_name": "OLIgogenic diseases DAtabase (OLIDA)", "resource_url": "olida.ibsquare.be", "api_release_year": "2021", "api_developer": [ [ "Arnau Dillen", "arnau.dillen@ulb.ac.be" ], [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_version": "0.3", "api_maintainers": [ [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_documentation": [ "olida.ibsquare.be/api/swagger", "olida.ibsquare.be/api/redoc" ], "copyright": "Copyright (c) 2025 · OLIDA All Rights Reserved.", "license": "CC Attribution-NonCommercial 4.0 International License", "ontologies": { "ORDO": "http://bioportal.bioontology.org/ontologies/ORDO", "GENO": "http://purl.obolibrary.org/obo/geno.owl", "MI": "http://purl.obolibrary.org/obo/mi.owl", "NCIT": "http://purl.obolibrary.org/obo/ncit.owl", "OGI": "http://purl.obolibrary.org/obo/ogi.owl", "OGG": "http://purl.obolibrary.org/obo/ogg.owl" }, "relevant_publications_doi": [ "10.1093/nar/gkv1068", "10.1093/database/baac023" ], "size": 3 } }