Gene List
This API endpoint handles listing (/genes) and retrieval (/genes/<ID>/) of genes that are contained in the database due to their association to
genetic variants that are involved in at least one oligogenic combination in OLIDA.
GET /api/genecombinations/809/genes/?format=api
{ "data": [ { "type": "Gene", "id": "HOXB3", "attributes": { "go_molecular_function": [ "['DNA-binding transcription factor activity, RNA polymerase II-specific', 'RNA polymerase II cis-regulatory region sequence-specific DNA binding', 'DNA-binding transcription activator activity, RNA polymerase II-specific']" ], "pathway_id": [ "R-HSA-1266738", "R-HSA-5617472", "R-HSA-5619507" ], "essential_gene": "Essential", "status": "CU", "uniprot_acc": "P14651", "ensembl_id": "None", "entrez_id": "ENSG00000120093", "chromosome_number": "17", "lastmodified": "2022-08-04T14:14:59.436573" }, "relationships": { "variant_set": { "meta": { "count": 6 }, "data": [ { "type": "SmallVariant", "id": "2370" }, { "type": "SmallVariant", "id": "2368" }, { "type": "SmallVariant", "id": "2382" }, { "type": "SmallVariant", "id": "3134" }, { "type": "SmallVariant", "id": "3135" }, { "type": "SmallVariant", "id": "3151" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/HOXB3/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/HOXB3/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 5 }, "data": [ { "type": "GeneCombination", "id": "802" }, { "type": "GeneCombination", "id": "803" }, { "type": "GeneCombination", "id": "809" }, { "type": "GeneCombination", "id": "1048" }, { "type": "GeneCombination", "id": "1049" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/HOXB3/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/HOXB3/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/HOXB3/?format=api" } }, { "type": "Gene", "id": "JAG1", "attributes": { "go_molecular_function": [ "['growth factor activity', 'calcium ion binding', 'structural molecule activity', 'Notch binding', 'protein binding', 'phospholipid binding']" ], "pathway_id": [ "kegg_path:hsa01522", "kegg_path:hsa04330", "kegg_path:hsa04371", "kegg_path:hsa04658", "kegg_path:hsa04668", "kegg_path:hsa05165", "kegg_path:hsa05200", "kegg_path:hsa05224", "R-HSA-157118", "R-HSA-162582", "R-HSA-1643685", "R-HSA-1980143", "R-HSA-1980145", "R-HSA-2122948", "R-HSA-212436", "R-HSA-2644602", "R-HSA-2644603", "R-HSA-2644606", "R-HSA-2660825", "R-HSA-2660826", "R-HSA-2691230", "R-HSA-2691232", "R-HSA-2894858", "R-HSA-2894862", "R-HSA-2979096", "R-HSA-5663202", "R-HSA-73857", "R-HSA-74160", "R-HSA-8878159", "R-HSA-8941856", "R-HSA-9012852", "R-HSA-9013507", "R-HSA-9013694", "R-HSA-9013700", "kegg_path:hsa01522", "kegg_path:hsa04330", "kegg_path:hsa04371", "kegg_path:hsa04658", "kegg_path:hsa04668", "kegg_path:hsa05165", "kegg_path:hsa05200", "kegg_path:hsa05224", "R-HSA-157118", "R-HSA-162582", "R-HSA-1643685", "R-HSA-1980143", "R-HSA-1980145", "R-HSA-2122948", "R-HSA-212436", "R-HSA-2644602", "R-HSA-2644603", "R-HSA-2644606", "R-HSA-2660825", "R-HSA-2660826", "R-HSA-2691230", "R-HSA-2691232", "R-HSA-2894858", "R-HSA-2894862", "R-HSA-2979096", "R-HSA-5663202", "R-HSA-73857", "R-HSA-74160", "R-HSA-8878159", "R-HSA-8941856", "R-HSA-9012852", "R-HSA-9013507", "R-HSA-9013694", "R-HSA-9013700" ], "essential_gene": "Essential", "status": "CU", "uniprot_acc": "P78504", "ensembl_id": "None", "entrez_id": "ENSG00000101384", "chromosome_number": "20", "lastmodified": "2021-10-18T11:00:44.441927" }, "relationships": { "variant_set": { "meta": { "count": 7 }, "data": [ { "type": "SmallVariant", "id": "914" }, { "type": "SmallVariant", "id": "1229" }, { "type": "SmallVariant", "id": "1232" }, { "type": "SmallVariant", "id": "1237" }, { "type": "SmallVariant", "id": "2354" }, { "type": "SmallVariant", "id": "2355" }, { "type": "SmallVariant", "id": "3147" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/JAG1/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/JAG1/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 8 }, "data": [ { "type": "GeneCombination", "id": "286" }, { "type": "GeneCombination", "id": "392" }, { "type": "GeneCombination", "id": "393" }, { "type": "GeneCombination", "id": "395" }, { "type": "GeneCombination", "id": "398" }, { "type": "GeneCombination", "id": "796" }, { "type": "GeneCombination", "id": "795" }, { "type": "GeneCombination", "id": "809" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/JAG1/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/JAG1/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/JAG1/?format=api" } }, { "type": "Gene", "id": "TG", "attributes": { "go_molecular_function": [ "['hormone activity', 'identical protein binding', 'protein binding']" ], "pathway_id": [ "kegg_path:hsa04918", "kegg_path:hsa05320" ], "essential_gene": "Non-essential", "status": "CU", "uniprot_acc": "P01266", "ensembl_id": "None", "entrez_id": "ENSG00000042832", "chromosome_number": "8", "lastmodified": "2021-10-18T11:00:44.776840" }, "relationships": { "variant_set": { "meta": { "count": 50 }, "data": [ { "type": "SmallVariant", "id": "67" }, { "type": "SmallVariant", "id": "1000" }, { "type": "SmallVariant", "id": "1001" }, { "type": "SmallVariant", "id": "1004" }, { "type": "SmallVariant", "id": "1007" }, { "type": "SmallVariant", "id": "1008" }, { "type": "SmallVariant", "id": "1009" }, { "type": "SmallVariant", "id": "1010" }, { "type": "SmallVariant", "id": "1019" }, { "type": "SmallVariant", "id": "1100" }, { "type": "SmallVariant", "id": "1102" }, { "type": "SmallVariant", "id": "1175" }, { "type": "SmallVariant", "id": "1177" }, { "type": "SmallVariant", "id": "1181" }, { "type": "SmallVariant", "id": "1183" }, { "type": "SmallVariant", "id": "1185" }, { "type": "SmallVariant", "id": "1228" }, { "type": "SmallVariant", "id": "1238" }, { "type": "SmallVariant", "id": "1239" }, { "type": "SmallVariant", "id": "1247" }, { "type": "SmallVariant", "id": "1267" }, { "type": "SmallVariant", "id": "2148" }, { "type": "SmallVariant", "id": "2150" }, { "type": "SmallVariant", "id": "2153" }, { "type": "SmallVariant", "id": "2155" }, { "type": "SmallVariant", "id": "2157" }, { "type": "SmallVariant", "id": "2211" }, { "type": "SmallVariant", "id": "2213" }, { "type": "SmallVariant", "id": "2215" }, { "type": "SmallVariant", "id": "2217" }, { "type": "SmallVariant", "id": "2219" }, { "type": "SmallVariant", "id": "2347" }, { "type": "SmallVariant", "id": "2361" }, { "type": "SmallVariant", "id": "2363" }, { "type": "SmallVariant", "id": "2365" }, { "type": "SmallVariant", "id": "2367" }, { "type": "SmallVariant", "id": "2369" }, { "type": "SmallVariant", "id": "2375" }, { "type": "SmallVariant", "id": "2380" }, { "type": "SmallVariant", "id": "2383" }, { "type": "SmallVariant", "id": "3142" }, { "type": "SmallVariant", "id": "3149" }, { "type": "SmallVariant", "id": "3150" }, { "type": "SmallVariant", "id": "3155" }, { "type": "SmallVariant", "id": "3389" }, { "type": "SmallVariant", "id": "3390" }, { "type": "SmallVariant", "id": "3395" }, { "type": "SmallVariant", "id": "3777" }, { "type": "SmallVariant", "id": "3778" }, { "type": "SmallVariant", "id": "3780" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/TG/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/TG/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 20 }, "data": [ { "type": "GeneCombination", "id": "26" }, { "type": "GeneCombination", "id": "320" }, { "type": "GeneCombination", "id": "321" }, { "type": "GeneCombination", "id": "322" }, { "type": "GeneCombination", "id": "323" }, { "type": "GeneCombination", "id": "360" }, { "type": "GeneCombination", "id": "379" }, { "type": "GeneCombination", "id": "395" }, { "type": "GeneCombination", "id": "404" }, { "type": "GeneCombination", "id": "805" }, { "type": "GeneCombination", "id": "807" }, { "type": "GeneCombination", "id": "808" }, { "type": "GeneCombination", "id": "391" }, { "type": "GeneCombination", "id": "799" }, { "type": "GeneCombination", "id": "800" }, { "type": "GeneCombination", "id": "802" }, { "type": "GeneCombination", "id": "1136" }, { "type": "GeneCombination", "id": "1137" }, { "type": "GeneCombination", "id": "809" }, { "type": "GeneCombination", "id": "1279" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/TG/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/TG/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/TG/?format=api" } } ], "meta": { "database_name": "OLIgogenic diseases DAtabase (OLIDA)", "resource_url": "olida.ibsquare.be", "api_release_year": "2021", "api_developer": [ [ "Arnau Dillen", "arnau.dillen@ulb.ac.be" ], [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_version": "0.3", "api_maintainers": [ [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_documentation": [ "olida.ibsquare.be/api/swagger", "olida.ibsquare.be/api/redoc" ], "copyright": "Copyright (c) 2025 · OLIDA All Rights Reserved.", "license": "CC Attribution-NonCommercial 4.0 International License", "ontologies": { "ORDO": "http://bioportal.bioontology.org/ontologies/ORDO", "GENO": "http://purl.obolibrary.org/obo/geno.owl", "MI": "http://purl.obolibrary.org/obo/mi.owl", "NCIT": "http://purl.obolibrary.org/obo/ncit.owl", "OGI": "http://purl.obolibrary.org/obo/ogi.owl", "OGG": "http://purl.obolibrary.org/obo/ogg.owl" }, "relevant_publications_doi": [ "10.1093/nar/gkv1068", "10.1093/database/baac023" ], "size": 3 } }