Gene List
This API endpoint handles listing (/genes) and retrieval (/genes/<ID>/) of genes that are contained in the database due to their association to
genetic variants that are involved in at least one oligogenic combination in OLIDA.
GET /api/genecombinations/806/genes/?format=api
{ "data": [ { "type": "Gene", "id": "DUOXA2", "attributes": { "go_molecular_function": [ "['enzyme binding', 'protein binding']" ], "pathway_id": [ "kegg_path:hsa04918" ], "essential_gene": null, "status": "CU", "uniprot_acc": "Q1HG44", "ensembl_id": "None", "entrez_id": "ENSG00000140274", "chromosome_number": "15", "lastmodified": "2021-10-18T11:00:44.732233" }, "relationships": { "variant_set": { "meta": { "count": 10 }, "data": [ { "type": "SmallVariant", "id": "998" }, { "type": "SmallVariant", "id": "999" }, { "type": "SmallVariant", "id": "1173" }, { "type": "SmallVariant", "id": "2151" }, { "type": "SmallVariant", "id": "2154" }, { "type": "SmallVariant", "id": "2156" }, { "type": "SmallVariant", "id": "2521" }, { "type": "SmallVariant", "id": "3131" }, { "type": "SmallVariant", "id": "3140" }, { "type": "SmallVariant", "id": "3152" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/DUOXA2/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/DUOXA2/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 8 }, "data": [ { "type": "GeneCombination", "id": "320" }, { "type": "GeneCombination", "id": "323" }, { "type": "GeneCombination", "id": "378" }, { "type": "GeneCombination", "id": "379" }, { "type": "GeneCombination", "id": "806" }, { "type": "GeneCombination", "id": "856" }, { "type": "GeneCombination", "id": "1046" }, { "type": "GeneCombination", "id": "1052" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/DUOXA2/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/DUOXA2/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/DUOXA2/?format=api" } }, { "type": "Gene", "id": "HES1", "attributes": { "go_molecular_function": [ "['sequence-specific DNA binding', 'chaperone binding', 'chromatin binding', 'RNA polymerase II cis-regulatory region sequence-specific DNA binding', 'JUN kinase binding', 'E-box binding', 'DNA binding', 'HLH domain binding', 'protein-containing complex binding', 'RNA polymerase II-specific DNA-binding transcription factor binding', 'transcription corepressor binding', 'protein binding', 'sequence-specific double-stranded DNA binding', 'N-box binding', 'DNA-binding transcription factor activity, RNA polymerase II-specific', 'protein homodimerization activity', 'histone deacetylase binding', 'DNA-binding transcription repressor activity, RNA polymerase II-specific']" ], "pathway_id": [ "kegg_path:hsa03460", "kegg_path:hsa04330", "kegg_path:hsa04950", "kegg_path:hsa05165", "kegg_path:hsa05169", "kegg_path:hsa05200", "kegg_path:hsa05224", "R-HSA-1266738", "R-HSA-157118", "R-HSA-162582", "R-HSA-1643685", "R-HSA-186712", "R-HSA-1980143", "R-HSA-1980145", "R-HSA-210744", "R-HSA-2122947", "R-HSA-212436", "R-HSA-2197563", "R-HSA-2644602", "R-HSA-2644603", "R-HSA-2644606", "R-HSA-2894858", "R-HSA-2894862", "R-HSA-5663202", "R-HSA-73857", "R-HSA-74160", "R-HSA-8878159", "R-HSA-8878166", "R-HSA-8940973", "R-HSA-8941326", "R-HSA-8941856", "R-HSA-9012852", "R-HSA-9013508", "R-HSA-9013694", "R-HSA-9013695" ], "essential_gene": "Essential", "status": "CU", "uniprot_acc": "Q14469", "ensembl_id": "None", "entrez_id": "ENSG00000114315", "chromosome_number": "3", "lastmodified": "2022-08-04T14:14:58.994821" }, "relationships": { "variant_set": { "meta": { "count": 2 }, "data": [ { "type": "SmallVariant", "id": "2376" }, { "type": "SmallVariant", "id": "3153" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/HES1/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/HES1/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 1 }, "data": [ { "type": "GeneCombination", "id": "806" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/HES1/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/HES1/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/HES1/?format=api" } }, { "type": "Gene", "id": "TPO", "attributes": { "go_molecular_function": [ "['iodide peroxidase activity', 'calcium ion binding', 'peroxidase activity', 'heme binding']" ], "pathway_id": [ "kegg_path:hsa00350", "kegg_path:hsa01100", "kegg_path:hsa04918", "kegg_path:hsa05320", "R-HSA-1430728", "R-HSA-209776", "R-HSA-209968", "R-HSA-71291", "kegg_path:hsa00350", "kegg_path:hsa01100", "kegg_path:hsa04918", "kegg_path:hsa05320", "kegg_path:hsa00350", "kegg_path:hsa01100", "kegg_path:hsa04918", "kegg_path:hsa05320" ], "essential_gene": "Non-essential", "status": "CU", "uniprot_acc": "P07202", "ensembl_id": "None", "entrez_id": "ENSG00000115705", "chromosome_number": "2", "lastmodified": "2021-10-18T11:00:44.848610" }, "relationships": { "variant_set": { "meta": { "count": 22 }, "data": [ { "type": "SmallVariant", "id": "64" }, { "type": "SmallVariant", "id": "65" }, { "type": "SmallVariant", "id": "66" }, { "type": "SmallVariant", "id": "1003" }, { "type": "SmallVariant", "id": "1006" }, { "type": "SmallVariant", "id": "1015" }, { "type": "SmallVariant", "id": "1101" }, { "type": "SmallVariant", "id": "1246" }, { "type": "SmallVariant", "id": "1248" }, { "type": "SmallVariant", "id": "1260" }, { "type": "SmallVariant", "id": "1264" }, { "type": "SmallVariant", "id": "2158" }, { "type": "SmallVariant", "id": "2209" }, { "type": "SmallVariant", "id": "2218" }, { "type": "SmallVariant", "id": "2220" }, { "type": "SmallVariant", "id": "2377" }, { "type": "SmallVariant", "id": "2519" }, { "type": "SmallVariant", "id": "2520" }, { "type": "SmallVariant", "id": "2522" }, { "type": "SmallVariant", "id": "3387" }, { "type": "SmallVariant", "id": "3772" }, { "type": "SmallVariant", "id": "3773" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/TPO/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/TPO/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 11 }, "data": [ { "type": "GeneCombination", "id": "26" }, { "type": "GeneCombination", "id": "322" }, { "type": "GeneCombination", "id": "324" }, { "type": "GeneCombination", "id": "325" }, { "type": "GeneCombination", "id": "397" }, { "type": "GeneCombination", "id": "402" }, { "type": "GeneCombination", "id": "806" }, { "type": "GeneCombination", "id": "856" }, { "type": "GeneCombination", "id": "855" }, { "type": "GeneCombination", "id": "1050" }, { "type": "GeneCombination", "id": "1135" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/TPO/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/TPO/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/TPO/?format=api" } } ], "meta": { "database_name": "OLIgogenic diseases DAtabase (OLIDA)", "resource_url": "olida.ibsquare.be", "api_release_year": "2021", "api_developer": [ [ "Arnau Dillen", "arnau.dillen@ulb.ac.be" ], [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_version": "0.3", "api_maintainers": [ [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_documentation": [ "olida.ibsquare.be/api/swagger", "olida.ibsquare.be/api/redoc" ], "copyright": "Copyright (c) 2025 · OLIDA All Rights Reserved.", "license": "CC Attribution-NonCommercial 4.0 International License", "ontologies": { "ORDO": "http://bioportal.bioontology.org/ontologies/ORDO", "GENO": "http://purl.obolibrary.org/obo/geno.owl", "MI": "http://purl.obolibrary.org/obo/mi.owl", "NCIT": "http://purl.obolibrary.org/obo/ncit.owl", "OGI": "http://purl.obolibrary.org/obo/ogi.owl", "OGG": "http://purl.obolibrary.org/obo/ogg.owl" }, "relevant_publications_doi": [ "10.1093/nar/gkv1068", "10.1093/database/baac023" ], "size": 3 } }