Gene List
This API endpoint handles listing (/genes) and retrieval (/genes/<ID>/) of genes that are contained in the database due to their association to
genetic variants that are involved in at least one oligogenic combination in OLIDA.
GET /api/genecombinations/786/genes/?format=api
{ "data": [ { "type": "Gene", "id": "AKAP9", "attributes": { "go_molecular_function": [ "protein binding", "DNA binding", "signaling receptor binding", "transmembrane transporter binding", "molecular adaptor activity", "protein kinase A regulatory subunit binding", "potassium channel regulator activity" ], "pathway_id": [ "R-HSA-6802957", "R-HSA-2565942", "R-HSA-397014", "R-HSA-453274", "R-HSA-5663202", "R-HSA-1852241", "R-HSA-1643685", "R-HSA-380320", "R-HSA-5617833", "R-HSA-68886", "R-HSA-380259", "R-HSA-5576893", "R-HSA-6802952", "R-HSA-8854518", "R-HSA-380287", "R-HSA-5620912", "R-HSA-68877", "R-HSA-5576890", "R-HSA-69278", "R-HSA-380270", "R-HSA-5576891", "R-HSA-1640170", "R-HSA-380284", "R-HSA-69275" ], "essential_gene": null, "status": "CU", "uniprot_acc": "Q99996", "ensembl_id": "ENSG00000127914", "entrez_id": "10142", "chromosome_number": "7", "lastmodified": "2021-10-18T11:00:44.687932" }, "relationships": { "variant_set": { "meta": { "count": 2 }, "data": [ { "type": "SmallVariant", "id": "1405" }, { "type": "SmallVariant", "id": "2334" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/AKAP9/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/AKAP9/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 2 }, "data": [ { "type": "GeneCombination", "id": "441" }, { "type": "GeneCombination", "id": "786" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/AKAP9/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/AKAP9/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/AKAP9/?format=api" } }, { "type": "Gene", "id": "HDAC5", "attributes": { "go_molecular_function": [ "protein deacetylase activity", "protein binding", "histone deacetylase activity", "protein kinase C binding", "transcription cis-regulatory region binding", "identical protein binding", "NAD-dependent histone deacetylase activity (H3-K14 specific)", "histone deacetylase binding", "metal ion binding", "DNA-binding transcription factor binding", "RNA polymerase II-specific DNA-binding transcription factor binding", "transcription corepressor binding", "RNA polymerase II cis-regulatory region sequence-specific DNA binding" ], "pathway_id": [ "R-HSA-212436", "R-HSA-2122947", "kegg_path:hsa04371", "R-HSA-6807070", "kegg_path:hsa05203", "kegg_path:hsa05034", "kegg_path:hsa04613", "R-HSA-162582", "R-HSA-1980143", "R-HSA-2644606", "R-HSA-8943724", "R-HSA-9006925", "R-HSA-1257604", "R-HSA-350054", "R-HSA-5663202", "R-HSA-74160", "kegg_path:hsa05206", "R-HSA-1643685", "R-HSA-2644602", "R-HSA-2894862", "R-HSA-2644603", "R-HSA-2894858", "R-HSA-73857", "R-HSA-157118" ], "essential_gene": "Non-essential", "status": "CU", "uniprot_acc": "Q9UQL6", "ensembl_id": "ENSG00000108840", "entrez_id": "10014", "chromosome_number": "17", "lastmodified": "2022-08-04T14:14:59.511729" }, "relationships": { "variant_set": { "meta": { "count": 1 }, "data": [ { "type": "SmallVariant", "id": "2333" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/HDAC5/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/HDAC5/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 1 }, "data": [ { "type": "GeneCombination", "id": "786" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/HDAC5/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/HDAC5/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/HDAC5/?format=api" } } ], "meta": { "database_name": "OLIgogenic diseases DAtabase (OLIDA)", "resource_url": "olida.ibsquare.be", "api_release_year": "2021", "api_developer": [ [ "Arnau Dillen", "arnau.dillen@ulb.ac.be" ], [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_version": "0.3", "api_maintainers": [ [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_documentation": [ "olida.ibsquare.be/api/swagger", "olida.ibsquare.be/api/redoc" ], "copyright": "Copyright (c) 2025 · OLIDA All Rights Reserved.", "license": "CC Attribution-NonCommercial 4.0 International License", "ontologies": { "ORDO": "http://bioportal.bioontology.org/ontologies/ORDO", "GENO": "http://purl.obolibrary.org/obo/geno.owl", "MI": "http://purl.obolibrary.org/obo/mi.owl", "NCIT": "http://purl.obolibrary.org/obo/ncit.owl", "OGI": "http://purl.obolibrary.org/obo/ogi.owl", "OGG": "http://purl.obolibrary.org/obo/ogg.owl" }, "relevant_publications_doi": [ "10.1093/nar/gkv1068", "10.1093/database/baac023" ], "size": 2 } }