Gene List
This API endpoint handles listing (/genes) and retrieval (/genes/<ID>/) of genes that are contained in the database due to their association to
genetic variants that are involved in at least one oligogenic combination in OLIDA.
GET /api/genecombinations/768/genes/?format=api
{ "data": [ { "type": "Gene", "id": "APC2", "attributes": { "go_molecular_function": [ "microtubule binding", "gamma-catenin binding", "protein binding", "beta-catenin binding" ], "pathway_id": [ "kegg_path:hsa04310", "kegg_path:hsa05226", "kegg_path:hsa05213", "kegg_path:hsa05200", "kegg_path:hsa05225", "kegg_path:hsa05206", "kegg_path:hsa04810", "kegg_path:hsa05022", "kegg_path:hsa05217", "kegg_path:hsa05210", "kegg_path:hsa05224", "kegg_path:hsa05010", "kegg_path:hsa04550", "kegg_path:hsa05165", "kegg_path:hsa04390", "kegg_path:hsa04934" ], "essential_gene": null, "status": "CU", "uniprot_acc": "O95996", "ensembl_id": "ENSG00000115266", "entrez_id": "10297", "chromosome_number": "19", "lastmodified": "2022-08-04T14:14:58.051891" }, "relationships": { "variant_set": { "meta": { "count": 2 }, "data": [ { "type": "SmallVariant", "id": "2286" }, { "type": "SmallVariant", "id": "2319" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/APC2/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/APC2/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 2 }, "data": [ { "type": "GeneCombination", "id": "768" }, { "type": "GeneCombination", "id": "779" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/APC2/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/APC2/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/APC2/?format=api" } }, { "type": "Gene", "id": "ATG2A", "attributes": { "go_molecular_function": [ "phosphatidylinositol-3-phosphate binding", "lipid transfer activity", "protein binding" ], "pathway_id": [ "kegg_path:hsa05014", "kegg_path:hsa04136", "kegg_path:hsa04140", "kegg_path:hsa05016", "kegg_path:hsa05022", "kegg_path:hsa05017", "kegg_path:hsa05010" ], "essential_gene": null, "status": "CU", "uniprot_acc": "Q2TAZ0", "ensembl_id": "ENSG00000110046", "entrez_id": "23130", "chromosome_number": "11", "lastmodified": "2022-08-04T14:14:57.801537" }, "relationships": { "variant_set": { "meta": { "count": 1 }, "data": [ { "type": "SmallVariant", "id": "2287" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/ATG2A/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/ATG2A/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 1 }, "data": [ { "type": "GeneCombination", "id": "768" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/ATG2A/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/ATG2A/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/ATG2A/?format=api" } }, { "type": "Gene", "id": "COL6A1", "attributes": { "go_molecular_function": [ "['collagen binding', 'extracellular matrix structural constituent conferring tensile strength', 'platelet-derived growth factor binding']" ], "pathway_id": [ "kegg_path:hsa04151", "kegg_path:hsa04510", "kegg_path:hsa04512", "kegg_path:hsa04974", "kegg_path:hsa05165", "kegg_path:hsa04151", "kegg_path:hsa04510", "kegg_path:hsa04512", "kegg_path:hsa04974", "kegg_path:hsa05165", "R-HSA-1266738", "R-HSA-1442490", "R-HSA-1474228", "R-HSA-1474244", "R-HSA-1474290", "R-HSA-162582", "R-HSA-1650814", "R-HSA-186797", "R-HSA-2022090", "R-HSA-216083", "R-HSA-3000178", "R-HSA-375165", "R-HSA-419037", "R-HSA-422475", "R-HSA-8948216", "R-HSA-9006934", "R-HSA-9675108" ], "essential_gene": "Non-essential", "status": "CU", "uniprot_acc": "P12109", "ensembl_id": "None", "entrez_id": "ENSG00000142156", "chromosome_number": "21", "lastmodified": "2021-10-18T11:00:44.870026" }, "relationships": { "variant_set": { "meta": { "count": 3 }, "data": [ { "type": "SmallVariant", "id": "279" }, { "type": "SmallVariant", "id": "2288" }, { "type": "SmallVariant", "id": "2783" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/COL6A1/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/COL6A1/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 3 }, "data": [ { "type": "GeneCombination", "id": "100" }, { "type": "GeneCombination", "id": "768" }, { "type": "GeneCombination", "id": "931" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/COL6A1/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/COL6A1/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/COL6A1/?format=api" } }, { "type": "Gene", "id": "KPNA2", "attributes": { "go_molecular_function": [ "protein binding", "nuclear import signal receptor activity", "histone deacetylase binding", "RNA binding", "nuclear localization sequence binding" ], "pathway_id": [ "R-HSA-442755", "R-HSA-73894", "R-HSA-168255", "R-HSA-1489509", "R-HSA-5693548", "R-HSA-112040", "R-HSA-438064", "R-HSA-9018519", "R-HSA-913531", "R-HSA-372790", "R-HSA-9006925", "R-HSA-112315", "R-HSA-442729", "R-HSA-1169408", "R-HSA-1280215", "R-HSA-5693606", "R-HSA-162582", "R-HSA-5693532", "R-HSA-1169410", "R-HSA-112314", "R-HSA-111997", "R-HSA-168256", "R-HSA-111996", "R-HSA-418594", "R-HSA-5663205", "R-HSA-9006931", "R-HSA-168276", "R-HSA-388396", "R-HSA-8939211", "R-HSA-418594", "R-HSA-5663205", "R-HSA-9006931", "R-HSA-111996", "R-HSA-168256", "R-HSA-111997", "R-HSA-112314", "R-HSA-388396", "R-HSA-8939211", "R-HSA-168276", "R-HSA-162582", "R-HSA-5693532", "R-HSA-1169410", "R-HSA-112315", "R-HSA-442729", "R-HSA-372790", "R-HSA-9006925", "R-HSA-5693606", "R-HSA-1280215", "R-HSA-1169408", "kegg_path:hsa05164", "R-HSA-112040", "R-HSA-112043", "R-HSA-5693548", "R-HSA-111932", "R-HSA-1489509", "R-HSA-112316", "R-HSA-168255", "R-HSA-442755", "R-HSA-73894", "R-HSA-111933", "R-HSA-111885", "R-HSA-913531", "R-HSA-438064", "R-HSA-9018519", "R-HSA-1643685", "R-HSA-111933", "R-HSA-112316", "R-HSA-111932", "kegg_path:hsa05164", "R-HSA-112043", "R-HSA-1643685", "R-HSA-111885" ], "essential_gene": null, "status": "CU", "uniprot_acc": "P52292", "ensembl_id": "ENSG00000182481", "entrez_id": "3838", "chromosome_number": "17", "lastmodified": "2022-08-04T14:14:59.716991" }, "relationships": { "variant_set": { "meta": { "count": 1 }, "data": [ { "type": "SmallVariant", "id": "2289" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/KPNA2/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/KPNA2/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 1 }, "data": [ { "type": "GeneCombination", "id": "768" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/KPNA2/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/KPNA2/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/KPNA2/?format=api" } } ], "meta": { "database_name": "OLIgogenic diseases DAtabase (OLIDA)", "resource_url": "olida.ibsquare.be", "api_release_year": "2021", "api_developer": [ [ "Arnau Dillen", "arnau.dillen@ulb.ac.be" ], [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_version": "0.3", "api_maintainers": [ [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_documentation": [ "olida.ibsquare.be/api/swagger", "olida.ibsquare.be/api/redoc" ], "copyright": "Copyright (c) 2025 · OLIDA All Rights Reserved.", "license": "CC Attribution-NonCommercial 4.0 International License", "ontologies": { "ORDO": "http://bioportal.bioontology.org/ontologies/ORDO", "GENO": "http://purl.obolibrary.org/obo/geno.owl", "MI": "http://purl.obolibrary.org/obo/mi.owl", "NCIT": "http://purl.obolibrary.org/obo/ncit.owl", "OGI": "http://purl.obolibrary.org/obo/ogi.owl", "OGG": "http://purl.obolibrary.org/obo/ogg.owl" }, "relevant_publications_doi": [ "10.1093/nar/gkv1068", "10.1093/database/baac023" ], "size": 4 } }