Gene List
This API endpoint handles listing (/genes) and retrieval (/genes/<ID>/) of genes that are contained in the database due to their association to
genetic variants that are involved in at least one oligogenic combination in OLIDA.
GET /api/genecombinations/731/genes/?format=api
{ "data": [ { "type": "Gene", "id": "ERG", "attributes": { "go_molecular_function": [ "protein binding", "DNA-binding transcription factor activity, RNA polymerase II-specific", "DNA binding", "DNA-binding transcription activator activity, RNA polymerase II-specific", "chromatin binding", "sequence-specific double-stranded DNA binding", "RNA polymerase II cis-regulatory region sequence-specific DNA binding" ], "pathway_id": [ "kegg_path:hsa05202", "kegg_path:hsa05215" ], "essential_gene": "Essential", "status": "CU", "uniprot_acc": "P11308", "ensembl_id": "ENSG00000157554", "entrez_id": "2078", "chromosome_number": "21", "lastmodified": "2022-08-04T14:14:57.969382" }, "relationships": { "variant_set": { "meta": { "count": 1 }, "data": [ { "type": "SmallVariant", "id": "2120" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/ERG/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/ERG/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 1 }, "data": [ { "type": "GeneCombination", "id": "731" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/ERG/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/ERG/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/ERG/?format=api" } }, { "type": "Gene", "id": "H4C2", "attributes": { "go_molecular_function": [], "pathway_id": [], "essential_gene": null, "status": "CU", "uniprot_acc": "None", "ensembl_id": "ENSG00000278705", "entrez_id": "8366", "chromosome_number": "6", "lastmodified": "2022-08-04T14:15:00.075447" }, "relationships": { "variant_set": { "meta": { "count": 1 }, "data": [ { "type": "SmallVariant", "id": "2121" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/H4C2/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/H4C2/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 1 }, "data": [ { "type": "GeneCombination", "id": "731" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/H4C2/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/H4C2/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/H4C2/?format=api" } }, { "type": "Gene", "id": "NCOR2", "attributes": { "go_molecular_function": [ "Notch binding", "protein binding", "DNA binding", "glucocorticoid receptor binding", "protein N-terminus binding", "transcription corepressor activity", "histone deacetylase binding", "chromatin binding", "retinoid X receptor binding", "protein-containing complex binding" ], "pathway_id": [ "R-HSA-2644603", "R-HSA-2894858", "R-HSA-157118", "R-HSA-9697154", "R-HSA-2173793", "R-HSA-9029569", "R-HSA-170834", "kegg_path:hsa05169", "R-HSA-1643685", "R-HSA-2173795", "R-HSA-9675151", "R-HSA-3247509", "R-HSA-9022692", "R-HSA-1266738", "R-HSA-3214815", "R-HSA-400206", "R-HSA-212436", "R-HSA-5663205", "R-HSA-9006931", "R-HSA-2122947", "R-HSA-2990846", "R-HSA-3108232", "R-HSA-556833", "R-HSA-9024446", "R-HSA-9005891", "R-HSA-350054", "R-HSA-5663202", "R-HSA-74160", "R-HSA-9022537", "R-HSA-9609690", "R-HSA-597592", "R-HSA-9006936", "kegg_path:hsa04330", "R-HSA-4839726", "R-HSA-162582", "R-HSA-1980143", "R-HSA-9609646", "R-HSA-383280", "R-HSA-1430728", "R-HSA-73857", "R-HSA-8986944", "R-HSA-1989781", "R-HSA-9623433", "R-HSA-2894862", "R-HSA-9005895", "R-HSA-3899300", "R-HSA-381340", "R-HSA-392499", "R-HSA-2644602", "R-HSA-2644606" ], "essential_gene": "Essential", "status": "CU", "uniprot_acc": "Q9Y618", "ensembl_id": "ENSG00000196498", "entrez_id": "9612", "chromosome_number": "12", "lastmodified": "2022-08-04T14:14:58.085323" }, "relationships": { "variant_set": { "meta": { "count": 4 }, "data": [ { "type": "SmallVariant", "id": "2122" }, { "type": "SmallVariant", "id": "2258" }, { "type": "SmallVariant", "id": "2270" }, { "type": "SmallVariant", "id": "2295" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/NCOR2/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/NCOR2/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 4 }, "data": [ { "type": "GeneCombination", "id": "731" }, { "type": "GeneCombination", "id": "761" }, { "type": "GeneCombination", "id": "763" }, { "type": "GeneCombination", "id": "770" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/NCOR2/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/NCOR2/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/NCOR2/?format=api" } }, { "type": "Gene", "id": "PLEC", "attributes": { "go_molecular_function": [ "protein binding", "structural molecule activity", "ankyrin binding", "structural constituent of cytoskeleton", "dystroglycan binding", "RNA binding", "actin binding", "protein self-association", "cadherin binding", "structural constituent of muscle" ], "pathway_id": [ "R-HSA-446728", "R-HSA-1500931", "R-HSA-109581", "R-HSA-5357801", "R-HSA-2022090", "R-HSA-1474290", "R-HSA-264870", "R-HSA-2022090", "R-HSA-1474290", "R-HSA-264870", "R-HSA-109581", "R-HSA-5357801", "R-HSA-111465", "R-HSA-1500931", "R-HSA-1474244", "R-HSA-446107", "R-HSA-446728", "R-HSA-75153", "R-HSA-446107", "R-HSA-75153", "R-HSA-1474244", "R-HSA-111465" ], "essential_gene": "Essential", "status": "CU", "uniprot_acc": "Q15149", "ensembl_id": "ENSG00000178209", "entrez_id": "5339", "chromosome_number": "8", "lastmodified": "2022-08-04T14:14:59.833601" }, "relationships": { "variant_set": { "meta": { "count": 3 }, "data": [ { "type": "SmallVariant", "id": "2118" }, { "type": "SmallVariant", "id": "2119" }, { "type": "SmallVariant", "id": "2311" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/PLEC/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/PLEC/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 3 }, "data": [ { "type": "GeneCombination", "id": "730" }, { "type": "GeneCombination", "id": "731" }, { "type": "GeneCombination", "id": "776" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/PLEC/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/PLEC/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/PLEC/?format=api" } } ], "meta": { "database_name": "OLIgogenic diseases DAtabase (OLIDA)", "resource_url": "olida.ibsquare.be", "api_release_year": "2021", "api_developer": [ [ "Arnau Dillen", "arnau.dillen@ulb.ac.be" ], [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_version": "0.3", "api_maintainers": [ [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_documentation": [ "olida.ibsquare.be/api/swagger", "olida.ibsquare.be/api/redoc" ], "copyright": "Copyright (c) 2025 · OLIDA All Rights Reserved.", "license": "CC Attribution-NonCommercial 4.0 International License", "ontologies": { "ORDO": "http://bioportal.bioontology.org/ontologies/ORDO", "GENO": "http://purl.obolibrary.org/obo/geno.owl", "MI": "http://purl.obolibrary.org/obo/mi.owl", "NCIT": "http://purl.obolibrary.org/obo/ncit.owl", "OGI": "http://purl.obolibrary.org/obo/ogi.owl", "OGG": "http://purl.obolibrary.org/obo/ogg.owl" }, "relevant_publications_doi": [ "10.1093/nar/gkv1068", "10.1093/database/baac023" ], "size": 4 } }