Variant List
This API endpoint handles listing (/variants) and retrieval (/variants/<ID>/) of genetic variants from the database
GET /api/genes/NCOR2/variants/?format=api
{ "data": [ { "type": "SmallVariant", "id": "2122", "attributes": { "frequencies": { "KGP_genomes_maf": 0.0004, "KGP_genomes_AFR_maf": 0.0008, "KGP_genomes_AMR_maf": 0.0, "KGP_genomes_EAS_maf": 0.0, "KGP_genomes_EUR_maf": 0.001, "KGP_genomes_SAS_maf": 0.0, "gnomad_maf": 0.0006057, "gnomad_AFR_maf": 0.0002581, "gnomad_AMR_maf": 0.00061, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 5.572e-05, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 0.0009983, "gnomad_OTH_maf": 0.001333, "gnomad_SAS_maf": 9.82e-05, "ESP_AA_maf": 0.0002286, "ESP_EA_maf": 0.0008176 }, "predictions": { "sift_prediction": "Deleterious", "pp2_hvar_prediction": "Damaging", "cadd_prediction": 3.701582, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 124835279, "genomic_position_hg38": 124350733, "chromosome": "12", "annotation_flag": null, "lastmodified": "2023-06-06T16:57:53.351742", "ref_allele": "G", "alt_allele": "A", "cdna_change": "c.3698C>T", "protein_change": "p.Thr1233Met", "transcript_id": null, "dbsnp_id": "NA", "variant_effect": null }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI979" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/2122/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/2122/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/2122/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/2122/gene/?format=api" }, "data": { "type": "Gene", "id": "NCOR2" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/2122/?format=api" } }, { "type": "SmallVariant", "id": "2258", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": 0.0001726, "gnomad_AFR_maf": 0.0, "gnomad_AMR_maf": 0.0, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.0005144, "gnomad_NFE_maf": 0.0002565, "gnomad_OTH_maf": 0.0003305, "gnomad_SAS_maf": 3.268e-05, "ESP_AA_maf": 0.0, "ESP_EA_maf": 0.000234 }, "predictions": { "sift_prediction": "Deleterious", "pp2_hvar_prediction": "Damaging", "cadd_prediction": 4.220915, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 124835217, "genomic_position_hg38": 124350671, "chromosome": "12", "annotation_flag": null, "lastmodified": "2023-06-06T16:57:54.176543", "ref_allele": "G", "alt_allele": "A", "cdna_change": "c.3760C>T", "protein_change": "p.Arg1254Cys", "transcript_id": null, "dbsnp_id": "NA", "variant_effect": null }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI1041" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/2258/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/2258/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/2258/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/2258/gene/?format=api" }, "data": { "type": "Gene", "id": "NCOR2" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/2258/?format=api" } }, { "type": "SmallVariant", "id": "2270", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": null, "gnomad_AFR_maf": null, "gnomad_AMR_maf": null, "gnomad_ASJ_maf": null, "gnomad_EAS_maf": null, "gnomad_FIN_maf": null, "gnomad_NFE_maf": null, "gnomad_OTH_maf": null, "gnomad_SAS_maf": null, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Deleterious", "pp2_hvar_prediction": "Damaging", "cadd_prediction": 3.905344, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 124835222, "genomic_position_hg38": 124350676, "chromosome": "12", "annotation_flag": null, "lastmodified": "2023-06-06T16:57:54.249070", "ref_allele": "G", "alt_allele": "T", "cdna_change": "c.3755C>A", "protein_change": "p.Pro1252Gln", "transcript_id": null, "dbsnp_id": "NA", "variant_effect": null }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI1043" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/2270/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/2270/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/2270/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/2270/gene/?format=api" }, "data": { "type": "Gene", "id": "NCOR2" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/2270/?format=api" } }, { "type": "SmallVariant", "id": "2295", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": 2.023e-05, "gnomad_AFR_maf": 0.0, "gnomad_AMR_maf": 0.0, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 4.963e-05, "gnomad_NFE_maf": 3.557e-05, "gnomad_OTH_maf": 0.0, "gnomad_SAS_maf": 0.0, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Deleterious", "pp2_hvar_prediction": "Damaging", "cadd_prediction": 3.798548, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 124835268, "genomic_position_hg38": 124350722, "chromosome": "12", "annotation_flag": null, "lastmodified": "2023-06-06T16:57:54.399830", "ref_allele": "C", "alt_allele": "T", "cdna_change": "c.3709G>A", "protein_change": "p.Val1237Ile", "transcript_id": null, "dbsnp_id": "NA", "variant_effect": null }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI1050" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/2295/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/2295/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/2295/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/2295/gene/?format=api" }, "data": { "type": "Gene", "id": "NCOR2" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/2295/?format=api" } } ], "meta": { "database_name": "OLIgogenic diseases DAtabase (OLIDA)", "resource_url": "olida.ibsquare.be", "api_release_year": "2021", "api_developer": [ [ "Arnau Dillen", "arnau.dillen@ulb.ac.be" ], [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_version": "0.3", "api_maintainers": [ [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_documentation": [ "olida.ibsquare.be/api/swagger", "olida.ibsquare.be/api/redoc" ], "copyright": "Copyright (c) 2025 · OLIDA All Rights Reserved.", "license": "CC Attribution-NonCommercial 4.0 International License", "ontologies": { "ORDO": "http://bioportal.bioontology.org/ontologies/ORDO", "GENO": "http://purl.obolibrary.org/obo/geno.owl", "MI": "http://purl.obolibrary.org/obo/mi.owl", "NCIT": "http://purl.obolibrary.org/obo/ncit.owl", "OGI": "http://purl.obolibrary.org/obo/ogi.owl", "OGG": "http://purl.obolibrary.org/obo/ogg.owl" }, "relevant_publications_doi": [ "10.1093/nar/gkv1068", "10.1093/database/baac023" ], "Variant serializers": [ "SmallVariantSerializer", "CopyNumberVariantSerializer" ], "size": 4 } }