Gene List
This API endpoint handles listing (/genes) and retrieval (/genes/<ID>/) of genes that are contained in the database due to their association to
genetic variants that are involved in at least one oligogenic combination in OLIDA.
GET /api/genecombinations/595/genes/?format=api
{ "data": [ { "type": "Gene", "id": "SEMA3A", "attributes": { "go_molecular_function": [ "['semaphorin receptor binding', 'neuropilin binding', 'chemorepellent activity']" ], "pathway_id": [ "kegg_path:hsa04360", "R-HSA-1266738", "R-HSA-373755", "R-HSA-399954", "R-HSA-399955", "R-HSA-399956", "R-HSA-422475", "R-HSA-9675108" ], "essential_gene": "Essential", "status": "CU", "uniprot_acc": "Q14563", "ensembl_id": "None", "entrez_id": "ENSG00000075213", "chromosome_number": "7", "lastmodified": "2021-10-18T11:00:44.403934" }, "relationships": { "variant_set": { "meta": { "count": 18 }, "data": [ { "type": "SmallVariant", "id": "148" }, { "type": "SmallVariant", "id": "554" }, { "type": "SmallVariant", "id": "555" }, { "type": "SmallVariant", "id": "558" }, { "type": "SmallVariant", "id": "1797" }, { "type": "SmallVariant", "id": "1889" }, { "type": "SmallVariant", "id": "1920" }, { "type": "SmallVariant", "id": "2408" }, { "type": "SmallVariant", "id": "2663" }, { "type": "SmallVariant", "id": "2671" }, { "type": "SmallVariant", "id": "2708" }, { "type": "SmallVariant", "id": "2832" }, { "type": "SmallVariant", "id": "2843" }, { "type": "SmallVariant", "id": "2849" }, { "type": "SmallVariant", "id": "2856" }, { "type": "SmallVariant", "id": "2954" }, { "type": "SmallVariant", "id": "3012" }, { "type": "SmallVariant", "id": "3196" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/SEMA3A/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/SEMA3A/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 16 }, "data": [ { "type": "GeneCombination", "id": "190" }, { "type": "GeneCombination", "id": "191" }, { "type": "GeneCombination", "id": "595" }, { "type": "GeneCombination", "id": "630" }, { "type": "GeneCombination", "id": "647" }, { "type": "GeneCombination", "id": "820" }, { "type": "GeneCombination", "id": "818" }, { "type": "GeneCombination", "id": "189" }, { "type": "GeneCombination", "id": "889" }, { "type": "GeneCombination", "id": "53" }, { "type": "GeneCombination", "id": "900" }, { "type": "GeneCombination", "id": "904" }, { "type": "GeneCombination", "id": "906" }, { "type": "GeneCombination", "id": "948" }, { "type": "GeneCombination", "id": "983" }, { "type": "GeneCombination", "id": "1006" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/SEMA3A/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/SEMA3A/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/SEMA3A/?format=api" } }, { "type": "Gene", "id": "SPRY4", "attributes": { "go_molecular_function": [ "['protein kinase inhibitor activity', 'protein binding']" ], "pathway_id": [], "essential_gene": "Essential", "status": "CU", "uniprot_acc": "A0A0C4DFS6", "ensembl_id": "None", "entrez_id": "ENSG00000187678", "chromosome_number": "5", "lastmodified": "2021-10-18T11:00:44.751356" }, "relationships": { "variant_set": { "meta": { "count": 10 }, "data": [ { "type": "SmallVariant", "id": "784" }, { "type": "SmallVariant", "id": "811" }, { "type": "SmallVariant", "id": "1796" }, { "type": "SmallVariant", "id": "1829" }, { "type": "SmallVariant", "id": "2660" }, { "type": "SmallVariant", "id": "2692" }, { "type": "SmallVariant", "id": "2722" }, { "type": "SmallVariant", "id": "2728" }, { "type": "SmallVariant", "id": "3000" }, { "type": "SmallVariant", "id": "3270" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/SPRY4/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/SPRY4/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 11 }, "data": [ { "type": "GeneCombination", "id": "246" }, { "type": "GeneCombination", "id": "254" }, { "type": "GeneCombination", "id": "262" }, { "type": "GeneCombination", "id": "255" }, { "type": "GeneCombination", "id": "595" }, { "type": "GeneCombination", "id": "885" }, { "type": "GeneCombination", "id": "895" }, { "type": "GeneCombination", "id": "904" }, { "type": "GeneCombination", "id": "907" }, { "type": "GeneCombination", "id": "1002" }, { "type": "GeneCombination", "id": "1100" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/SPRY4/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/SPRY4/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/SPRY4/?format=api" } } ], "meta": { "database_name": "OLIgogenic diseases DAtabase (OLIDA)", "resource_url": "olida.ibsquare.be", "api_release_year": "2021", "api_developer": [ [ "Arnau Dillen", "arnau.dillen@ulb.ac.be" ], [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_version": "0.3", "api_maintainers": [ [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_documentation": [ "olida.ibsquare.be/api/swagger", "olida.ibsquare.be/api/redoc" ], "copyright": "Copyright (c) 2025 · OLIDA All Rights Reserved.", "license": "CC Attribution-NonCommercial 4.0 International License", "ontologies": { "ORDO": "http://bioportal.bioontology.org/ontologies/ORDO", "GENO": "http://purl.obolibrary.org/obo/geno.owl", "MI": "http://purl.obolibrary.org/obo/mi.owl", "NCIT": "http://purl.obolibrary.org/obo/ncit.owl", "OGI": "http://purl.obolibrary.org/obo/ogi.owl", "OGG": "http://purl.obolibrary.org/obo/ogg.owl" }, "relevant_publications_doi": [ "10.1093/nar/gkv1068", "10.1093/database/baac023" ], "size": 2 } }