Gene List
This API endpoint handles listing (/genes) and retrieval (/genes/<ID>/) of genes that are contained in the database due to their association to
genetic variants that are involved in at least one oligogenic combination in OLIDA.
GET /api/genecombinations/469/genes/?format=api
{ "data": [ { "type": "Gene", "id": "FAT1", "attributes": { "go_molecular_function": [ "['calcium ion binding', 'protein binding']" ], "pathway_id": [], "essential_gene": "Essential", "status": "CU", "uniprot_acc": "Q14517", "ensembl_id": "None", "entrez_id": "ENSG00000083857", "chromosome_number": "4", "lastmodified": "2021-10-18T11:00:45.009344" }, "relationships": { "variant_set": { "meta": { "count": 5 }, "data": [ { "type": "SmallVariant", "id": "1462" }, { "type": "SmallVariant", "id": "1464" }, { "type": "SmallVariant", "id": "1467" }, { "type": "SmallVariant", "id": "1469" }, { "type": "SmallVariant", "id": "3597" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/FAT1/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/FAT1/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 5 }, "data": [ { "type": "GeneCombination", "id": "467" }, { "type": "GeneCombination", "id": "468" }, { "type": "GeneCombination", "id": "469" }, { "type": "GeneCombination", "id": "470" }, { "type": "GeneCombination", "id": "1211" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/FAT1/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/FAT1/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/FAT1/?format=api" } }, { "type": "Gene", "id": "LRP2", "attributes": { "go_molecular_function": [ "calcium ion binding", "protein binding", "protein transporter activity", "hormone binding", "insulin-like growth factor I binding", "chaperone binding", "cargo receptor activity", "low-density lipoprotein particle receptor activity", "SH3 domain binding" ], "pathway_id": [ "R-HSA-196854", "R-HSA-162582", "R-HSA-372790", "R-HSA-8957322", "R-HSA-2187338", "R-HSA-196791", "R-HSA-6806667", "R-HSA-8856825", "R-HSA-1430728", "kegg_path:hsa04340", "R-HSA-556833", "kegg_path:hsa04979", "R-HSA-5653656", "R-HSA-8856828", "kegg_path:hsa04918", "R-HSA-418594", "R-HSA-975634", "R-HSA-199991", "R-HSA-388396" ], "essential_gene": "Essential", "status": "CU", "uniprot_acc": "P98164", "ensembl_id": "ENSG00000081479", "entrez_id": "4036", "chromosome_number": "2", "lastmodified": "2021-10-18T11:00:44.952832" }, "relationships": { "variant_set": { "meta": { "count": 3 }, "data": [ { "type": "SmallVariant", "id": "1468" }, { "type": "SmallVariant", "id": "1485" }, { "type": "SmallVariant", "id": "1993" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/LRP2/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/LRP2/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 3 }, "data": [ { "type": "GeneCombination", "id": "469" }, { "type": "GeneCombination", "id": "475" }, { "type": "GeneCombination", "id": "686" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/LRP2/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/LRP2/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/LRP2/?format=api" } } ], "meta": { "database_name": "OLIgogenic diseases DAtabase (OLIDA)", "resource_url": "olida.ibsquare.be", "api_release_year": "2021", "api_developer": [ [ "Arnau Dillen", "arnau.dillen@ulb.ac.be" ], [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_version": "0.3", "api_maintainers": [ [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_documentation": [ "olida.ibsquare.be/api/swagger", "olida.ibsquare.be/api/redoc" ], "copyright": "Copyright (c) 2024 · OLIDA All Rights Reserved.", "license": "CC Attribution-NonCommercial 4.0 International License", "ontologies": { "ORDO": "http://bioportal.bioontology.org/ontologies/ORDO", "GENO": "http://purl.obolibrary.org/obo/geno.owl", "MI": "http://purl.obolibrary.org/obo/mi.owl", "NCIT": "http://purl.obolibrary.org/obo/ncit.owl", "OGI": "http://purl.obolibrary.org/obo/ogi.owl", "OGG": "http://purl.obolibrary.org/obo/ogg.owl" }, "relevant_publications_doi": [ "10.1093/nar/gkv1068", "10.1093/database/baac023" ], "size": 2 } }