Gene List
This API endpoint handles listing (/genes) and retrieval (/genes/<ID>/) of genes that are contained in the database due to their association to
genetic variants that are involved in at least one oligogenic combination in OLIDA.
GET /api/genecombinations/1050/genes/?format=api
{ "data": [ { "type": "Gene", "id": "EYA1", "attributes": { "go_molecular_function": [ "['RNA binding', 'protein tyrosine phosphatase activity', 'protein binding', 'metal ion binding', 'protein serine/threonine phosphatase activity']" ], "pathway_id": [ "kegg_path:hsa05202", "kegg_path:hsa05202", "R-HSA-5693532", "R-HSA-5693565", "R-HSA-5693606", "R-HSA-73894" ], "essential_gene": "Essential", "status": "CU", "uniprot_acc": "Q99502", "ensembl_id": "None", "entrez_id": "ENSG00000104313", "chromosome_number": "8", "lastmodified": "2021-10-18T11:00:44.242125" }, "relationships": { "variant_set": { "meta": { "count": 5 }, "data": [ { "type": "SmallVariant", "id": "1297" }, { "type": "SmallVariant", "id": "2372" }, { "type": "SmallVariant", "id": "2374" }, { "type": "SmallVariant", "id": "2757" }, { "type": "SmallVariant", "id": "3137" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/EYA1/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/EYA1/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 5 }, "data": [ { "type": "GeneCombination", "id": "410" }, { "type": "GeneCombination", "id": "804" }, { "type": "GeneCombination", "id": "805" }, { "type": "GeneCombination", "id": "921" }, { "type": "GeneCombination", "id": "1050" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/EYA1/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/EYA1/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/EYA1/?format=api" } }, { "type": "Gene", "id": "TPO", "attributes": { "go_molecular_function": [ "['iodide peroxidase activity', 'calcium ion binding', 'peroxidase activity', 'heme binding']" ], "pathway_id": [ "kegg_path:hsa00350", "kegg_path:hsa01100", "kegg_path:hsa04918", "kegg_path:hsa05320", "R-HSA-1430728", "R-HSA-209776", "R-HSA-209968", "R-HSA-71291", "kegg_path:hsa00350", "kegg_path:hsa01100", "kegg_path:hsa04918", "kegg_path:hsa05320", "kegg_path:hsa00350", "kegg_path:hsa01100", "kegg_path:hsa04918", "kegg_path:hsa05320" ], "essential_gene": "Non-essential", "status": "CU", "uniprot_acc": "P07202", "ensembl_id": "None", "entrez_id": "ENSG00000115705", "chromosome_number": "2", "lastmodified": "2021-10-18T11:00:44.848610" }, "relationships": { "variant_set": { "meta": { "count": 22 }, "data": [ { "type": "SmallVariant", "id": "64" }, { "type": "SmallVariant", "id": "65" }, { "type": "SmallVariant", "id": "66" }, { "type": "SmallVariant", "id": "1003" }, { "type": "SmallVariant", "id": "1006" }, { "type": "SmallVariant", "id": "1015" }, { "type": "SmallVariant", "id": "1101" }, { "type": "SmallVariant", "id": "1246" }, { "type": "SmallVariant", "id": "1248" }, { "type": "SmallVariant", "id": "1260" }, { "type": "SmallVariant", "id": "1264" }, { "type": "SmallVariant", "id": "2158" }, { "type": "SmallVariant", "id": "2209" }, { "type": "SmallVariant", "id": "2218" }, { "type": "SmallVariant", "id": "2220" }, { "type": "SmallVariant", "id": "2377" }, { "type": "SmallVariant", "id": "2519" }, { "type": "SmallVariant", "id": "2520" }, { "type": "SmallVariant", "id": "2522" }, { "type": "SmallVariant", "id": "3387" }, { "type": "SmallVariant", "id": "3772" }, { "type": "SmallVariant", "id": "3773" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/TPO/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/TPO/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 11 }, "data": [ { "type": "GeneCombination", "id": "26" }, { "type": "GeneCombination", "id": "322" }, { "type": "GeneCombination", "id": "324" }, { "type": "GeneCombination", "id": "325" }, { "type": "GeneCombination", "id": "397" }, { "type": "GeneCombination", "id": "402" }, { "type": "GeneCombination", "id": "806" }, { "type": "GeneCombination", "id": "856" }, { "type": "GeneCombination", "id": "855" }, { "type": "GeneCombination", "id": "1050" }, { "type": "GeneCombination", "id": "1135" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/TPO/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/TPO/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/TPO/?format=api" } } ], "meta": { "database_name": "OLIgogenic diseases DAtabase (OLIDA)", "resource_url": "olida.ibsquare.be", "api_release_year": "2021", "api_developer": [ [ "Arnau Dillen", "arnau.dillen@ulb.ac.be" ], [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_version": "0.3", "api_maintainers": [ [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_documentation": [ "olida.ibsquare.be/api/swagger", "olida.ibsquare.be/api/redoc" ], "copyright": "Copyright (c) 2025 · OLIDA All Rights Reserved.", "license": "CC Attribution-NonCommercial 4.0 International License", "ontologies": { "ORDO": "http://bioportal.bioontology.org/ontologies/ORDO", "GENO": "http://purl.obolibrary.org/obo/geno.owl", "MI": "http://purl.obolibrary.org/obo/mi.owl", "NCIT": "http://purl.obolibrary.org/obo/ncit.owl", "OGI": "http://purl.obolibrary.org/obo/ogi.owl", "OGG": "http://purl.obolibrary.org/obo/ogg.owl" }, "relevant_publications_doi": [ "10.1093/nar/gkv1068", "10.1093/database/baac023" ], "size": 2 } }