Variant List
This API endpoint handles listing (/variants) and retrieval (/variants/<ID>/) of genetic variants from the database
GET /api/genes/STUB1/variants/?format=api
{ "data": [ { "type": "SmallVariant", "id": "2525", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": null, "gnomad_AFR_maf": null, "gnomad_AMR_maf": null, "gnomad_ASJ_maf": null, "gnomad_EAS_maf": null, "gnomad_FIN_maf": null, "gnomad_NFE_maf": null, "gnomad_OTH_maf": null, "gnomad_SAS_maf": null, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Deleterious", "pp2_hvar_prediction": "Damaging", "cadd_prediction": 3.44503, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 732443, "genomic_position_hg38": 682443, "chromosome": "16", "annotation_flag": null, "lastmodified": "2023-06-06T16:57:55.770019", "ref_allele": "T", "alt_allele": "G", "cdna_change": "c.866T>G", "protein_change": "p.Val289Gly", "transcript_id": "NM_005861.4", "dbsnp_id": "NA", "variant_effect": null }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI1176" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/2525/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/2525/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/2525/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/2525/gene/?format=api" }, "data": { "type": "Gene", "id": "STUB1" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/2525/?format=api" } }, { "type": "SmallVariant", "id": "2527", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": 3.996e-06, "gnomad_AFR_maf": 0.0, "gnomad_AMR_maf": 0.0, "gnomad_ASJ_maf": 9.962e-05, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 0.0, "gnomad_OTH_maf": 0.0, "gnomad_SAS_maf": 0.0, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Deleterious", "pp2_hvar_prediction": "Damaging", "cadd_prediction": 3.489604, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 732223, "genomic_position_hg38": 682223, "chromosome": "16", "annotation_flag": null, "lastmodified": "2023-06-06T16:57:55.775987", "ref_allele": "C", "alt_allele": "T", "cdna_change": "c.728C>T", "protein_change": "p.Pro243Leu", "transcript_id": "NM_005861.4", "dbsnp_id": "NA", "variant_effect": null }, "relationships": { "in_combination": { "meta": { "count": 3 }, "data": [ { "type": "Combination", "id": "OLI1177" }, { "type": "Combination", "id": "OLI1192" }, { "type": "Combination", "id": "OLI1369" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/2527/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/2527/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/2527/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/2527/gene/?format=api" }, "data": { "type": "Gene", "id": "STUB1" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/2527/?format=api" } }, { "type": "SmallVariant", "id": "2529", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": null, "gnomad_AFR_maf": null, "gnomad_AMR_maf": null, "gnomad_ASJ_maf": null, "gnomad_EAS_maf": null, "gnomad_FIN_maf": null, "gnomad_NFE_maf": null, "gnomad_OTH_maf": null, "gnomad_SAS_maf": null, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Deleterious", "pp2_hvar_prediction": "Damaging", "cadd_prediction": 2.558629, "mutationtaster_prediction": "Disease causing" }, "status": "CU", "genomic_position_hg19": 731472, "genomic_position_hg38": 681472, "chromosome": "16", "annotation_flag": null, "lastmodified": "2023-06-06T16:57:55.781931", "ref_allele": "C", "alt_allele": "G", "cdna_change": "c.393C>G", "protein_change": "p.Phe131Leu", "transcript_id": "NM_005861.4", "dbsnp_id": "NA", "variant_effect": null }, "relationships": { "in_combination": { "meta": { "count": 2 }, "data": [ { "type": "Combination", "id": "OLI1178" }, { "type": "Combination", "id": "OLI1194" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/2529/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/2529/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/2529/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/2529/gene/?format=api" }, "data": { "type": "Gene", "id": "STUB1" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/2529/?format=api" } }, { "type": "SmallVariant", "id": "2531", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": null, "gnomad_AFR_maf": null, "gnomad_AMR_maf": null, "gnomad_ASJ_maf": null, "gnomad_EAS_maf": null, "gnomad_FIN_maf": null, "gnomad_NFE_maf": null, "gnomad_OTH_maf": null, "gnomad_SAS_maf": null, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Deleterious", "pp2_hvar_prediction": "Damaging", "cadd_prediction": 4.277516, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 731192, "genomic_position_hg38": 681192, "chromosome": "16", "annotation_flag": null, "lastmodified": "2023-06-06T16:57:55.787680", "ref_allele": "C", "alt_allele": "T", "cdna_change": "c.200C>T", "protein_change": "p.Ala67Val", "transcript_id": "NM_005861.4", "dbsnp_id": "NA", "variant_effect": null }, "relationships": { "in_combination": { "meta": { "count": 2 }, "data": [ { "type": "Combination", "id": "OLI1179" }, { "type": "Combination", "id": "OLI1197" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/2531/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/2531/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/2531/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/2531/gene/?format=api" }, "data": { "type": "Gene", "id": "STUB1" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/2531/?format=api" } }, { "type": "SmallVariant", "id": "2533", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": 7.985e-06, "gnomad_AFR_maf": 0.0, "gnomad_AMR_maf": 2.893e-05, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 8.841e-06, "gnomad_OTH_maf": 0.0, "gnomad_SAS_maf": 0.0, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": null, "pp2_hvar_prediction": null, "cadd_prediction": 5.28164, "mutationtaster_prediction": "Disease causing" }, "status": "CU", "genomic_position_hg19": 732181, "genomic_position_hg38": 682181, "chromosome": "16", "annotation_flag": null, "lastmodified": "2023-06-06T16:57:55.793448", "ref_allele": "ACTAC", "alt_allele": "A", "cdna_change": "c.689_692delACCT", "protein_change": "p.Tyr230CysfsTer9", "transcript_id": "NM_005861.4", "dbsnp_id": "NA", "variant_effect": null }, "relationships": { "in_combination": { "meta": { "count": 2 }, "data": [ { "type": "Combination", "id": "OLI1180" }, { "type": "Combination", "id": "OLI1198" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/2533/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/2533/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/2533/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/2533/gene/?format=api" }, "data": { "type": "Gene", "id": "STUB1" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/2533/?format=api" } }, { "type": "SmallVariant", "id": "2534", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": null, "gnomad_AFR_maf": null, "gnomad_AMR_maf": null, "gnomad_ASJ_maf": null, "gnomad_EAS_maf": null, "gnomad_FIN_maf": null, "gnomad_NFE_maf": null, "gnomad_OTH_maf": null, "gnomad_SAS_maf": null, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": null, "pp2_hvar_prediction": null, "cadd_prediction": null, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 730671, "genomic_position_hg38": 730671, "chromosome": "6", "annotation_flag": null, "lastmodified": "2023-06-06T16:57:55.799366", "ref_allele": "A", "alt_allele": "G", "cdna_change": "c.146A>G", "protein_change": "p.Tyr49Cys", "transcript_id": "NM_005861.4", "dbsnp_id": "NA", "variant_effect": null }, "relationships": { "in_combination": { "meta": { "count": 2 }, "data": [ { "type": "Combination", "id": "OLI1181" }, { "type": "Combination", "id": "OLI1210" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/2534/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/2534/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/2534/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/2534/gene/?format=api" }, "data": { "type": "Gene", "id": "STUB1" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/2534/?format=api" } }, { "type": "SmallVariant", "id": "2536", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": null, "gnomad_AFR_maf": null, "gnomad_AMR_maf": null, "gnomad_ASJ_maf": null, "gnomad_EAS_maf": null, "gnomad_FIN_maf": null, "gnomad_NFE_maf": null, "gnomad_OTH_maf": null, "gnomad_SAS_maf": null, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": null, "pp2_hvar_prediction": null, "cadd_prediction": 4.844824, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 732363, "genomic_position_hg38": 682363, "chromosome": "16", "annotation_flag": null, "lastmodified": "2023-06-06T16:57:55.805464", "ref_allele": "G", "alt_allele": "C", "cdna_change": "c.787-1G>C", "protein_change": null, "transcript_id": "NM_005861.4", "dbsnp_id": "NA", "variant_effect": null }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI1182" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/2536/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/2536/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/2536/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/2536/gene/?format=api" }, "data": { "type": "Gene", "id": "STUB1" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/2536/?format=api" } }, { "type": "SmallVariant", "id": "2537", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": 4.083e-06, "gnomad_AFR_maf": 0.0, "gnomad_AMR_maf": 0.0, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 0.0, "gnomad_OTH_maf": 0.0, "gnomad_SAS_maf": 3.305e-05, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": null, "pp2_hvar_prediction": null, "cadd_prediction": 5.789412, "mutationtaster_prediction": "Disease causing" }, "status": "CU", "genomic_position_hg19": 731604, "genomic_position_hg38": 681604, "chromosome": "16", "annotation_flag": null, "lastmodified": "2023-06-06T16:57:55.811218", "ref_allele": "G", "alt_allele": "A", "cdna_change": "c.524+1G>A", "protein_change": null, "transcript_id": "NM_005861.4", "dbsnp_id": "NA", "variant_effect": null }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI1183" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/2537/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/2537/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/2537/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/2537/gene/?format=api" }, "data": { "type": "Gene", "id": "STUB1" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/2537/?format=api" } }, { "type": "SmallVariant", "id": "2538", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": null, "gnomad_AFR_maf": null, "gnomad_AMR_maf": null, "gnomad_ASJ_maf": null, "gnomad_EAS_maf": null, "gnomad_FIN_maf": null, "gnomad_NFE_maf": null, "gnomad_OTH_maf": null, "gnomad_SAS_maf": null, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Deleterious", "pp2_hvar_prediction": "Damaging", "cadd_prediction": 2.723694, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 730626, "genomic_position_hg38": 680626, "chromosome": "16", "annotation_flag": null, "lastmodified": "2023-06-06T16:57:55.817072", "ref_allele": "A", "alt_allele": "G", "cdna_change": "c.101A>G", "protein_change": "p.Asn34Ser", "transcript_id": "NM_005861.4", "dbsnp_id": "NA", "variant_effect": null }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI1184" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/2538/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/2538/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/2538/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/2538/gene/?format=api" }, "data": { "type": "Gene", "id": "STUB1" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/2538/?format=api" } }, { "type": "SmallVariant", "id": "2539", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": null, "gnomad_AFR_maf": null, "gnomad_AMR_maf": null, "gnomad_ASJ_maf": null, "gnomad_EAS_maf": null, "gnomad_FIN_maf": null, "gnomad_NFE_maf": null, "gnomad_OTH_maf": null, "gnomad_SAS_maf": null, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": null, "pp2_hvar_prediction": null, "cadd_prediction": 5.092036, "mutationtaster_prediction": "Disease causing" }, "status": "CU", "genomic_position_hg19": 731881, "genomic_position_hg38": 681881, "chromosome": "16", "annotation_flag": null, "lastmodified": "2023-06-06T16:57:55.822915", "ref_allele": "G", "alt_allele": "C", "cdna_change": "c.612+1G>C", "protein_change": null, "transcript_id": "NM_005861.4", "dbsnp_id": "NA", "variant_effect": null }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI1185" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/2539/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/2539/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/2539/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/2539/gene/?format=api" }, "data": { "type": "Gene", "id": "STUB1" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/2539/?format=api" } }, { "type": "SmallVariant", "id": "2541", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, 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