Gene List
This API endpoint handles listing (/genes) and retrieval (/genes/<ID>/) of genes that are contained in the database due to their association to
genetic variants that are involved in at least one oligogenic combination in OLIDA.
GET /api/genecombinations/927/genes/?format=api
{ "data": [ { "type": "Gene", "id": "PNPLA6", "attributes": { "go_molecular_function": [ "['lysophospholipase activity', 'phosphatidyl phospholipase B activity']" ], "pathway_id": [ "kegg_path:hsa00564", "R-HSA-1430728", "R-HSA-1483255", "R-HSA-1483257", "R-HSA-556833", "R-HSA-6814848" ], "essential_gene": "Essential", "status": "CU", "uniprot_acc": "Q8IY17", "ensembl_id": "None", "entrez_id": "ENSG00000032444", "chromosome_number": "19", "lastmodified": "2021-10-18T11:00:44.696531" }, "relationships": { "variant_set": { "meta": { "count": 8 }, "data": [ { "type": "SmallVariant", "id": "1794" }, { "type": "SmallVariant", "id": "1855" }, { "type": "SmallVariant", "id": "2773" }, { "type": "SmallVariant", "id": "2918" }, { "type": "SmallVariant", "id": "2939" }, { "type": "SmallVariant", "id": "2968" }, { "type": "SmallVariant", "id": "2972" }, { "type": "SmallVariant", "id": "2979" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/PNPLA6/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/PNPLA6/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 9 }, "data": [ { "type": "GeneCombination", "id": "594" }, { "type": "GeneCombination", "id": "616" }, { "type": "GeneCombination", "id": "927" }, { "type": "GeneCombination", "id": "968" }, { "type": "GeneCombination", "id": "977" }, { "type": "GeneCombination", "id": "988" }, { "type": "GeneCombination", "id": "990" }, { "type": "GeneCombination", "id": "994" }, { "type": "GeneCombination", "id": "997" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/PNPLA6/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/PNPLA6/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/PNPLA6/?format=api" } }, { "type": "Gene", "id": "SOX10", "attributes": { "go_molecular_function": [ "['DNA-binding transcription activator activity', 'RNA polymerase II cis-regulatory region sequence-specific DNA binding', 'DNA-binding transcription activator activity, RNA polymerase II-specific', 'transcription cis-regulatory region binding', 'DNA-binding transcription factor activity, RNA polymerase II-specific', 'DNA binding', 'sequence-specific double-stranded DNA binding', 'protein binding', 'promoter-specific chromatin binding', 'DNA-binding transcription factor binding', 'identical protein binding', 'DNA-binding transcription factor activity']" ], "pathway_id": [ "R-HSA-1266738", "R-HSA-9619665", "R-HSA-9675108" ], "essential_gene": "Essential", "status": "CU", "uniprot_acc": "P56693", "ensembl_id": "None", "entrez_id": "ENSG00000100146", "chromosome_number": "22", "lastmodified": "2022-08-04T14:14:58.452639" }, "relationships": { "variant_set": { "meta": { "count": 8 }, "data": [ { "type": "SmallVariant", "id": "2400" }, { "type": "SmallVariant", "id": "2667" }, { "type": "SmallVariant", "id": "2774" }, { "type": "SmallVariant", "id": "2908" }, { "type": "SmallVariant", "id": "2912" }, { "type": "SmallVariant", "id": "3368" }, { "type": "SmallVariant", "id": "3373" }, { "type": "SmallVariant", "id": "3375" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/SOX10/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/SOX10/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 7 }, "data": [ { "type": "GeneCombination", "id": "817" }, { "type": "GeneCombination", "id": "887" }, { "type": "GeneCombination", "id": "927" }, { "type": "GeneCombination", "id": "965" }, { "type": "GeneCombination", "id": "966" }, { "type": "GeneCombination", "id": "1131" }, { "type": "GeneCombination", "id": "1132" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/SOX10/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/SOX10/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/SOX10/?format=api" } } ], "meta": { "database_name": "OLIgogenic diseases DAtabase (OLIDA)", "resource_url": "olida.ibsquare.be", "api_release_year": "2021", "api_developer": [ [ "Arnau Dillen", "arnau.dillen@ulb.ac.be" ], [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_version": "0.3", "api_maintainers": [ [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_documentation": [ "olida.ibsquare.be/api/swagger", "olida.ibsquare.be/api/redoc" ], "copyright": "Copyright (c) 2025 · OLIDA All Rights Reserved.", "license": "CC Attribution-NonCommercial 4.0 International License", "ontologies": { "ORDO": "http://bioportal.bioontology.org/ontologies/ORDO", "GENO": "http://purl.obolibrary.org/obo/geno.owl", "MI": "http://purl.obolibrary.org/obo/mi.owl", "NCIT": "http://purl.obolibrary.org/obo/ncit.owl", "OGI": "http://purl.obolibrary.org/obo/ogi.owl", "OGG": "http://purl.obolibrary.org/obo/ogg.owl" }, "relevant_publications_doi": [ "10.1093/nar/gkv1068", "10.1093/database/baac023" ], "size": 2 } }