Gene List
This API endpoint handles listing (/genes) and retrieval (/genes/<ID>/) of genes that are contained in the database due to their association to
genetic variants that are involved in at least one oligogenic combination in OLIDA.
GET /api/genecombinations/91/genes/?format=api
{ "data": [ { "type": "Gene", "id": "PDZD7", "attributes": { "go_molecular_function": [ "protein binding", "identical protein binding" ], "pathway_id": [], "essential_gene": null, "status": "CU", "uniprot_acc": "Q9H5P4", "ensembl_id": "ENSG00000186862", "entrez_id": "79955", "chromosome_number": "10", "lastmodified": "2021-10-18T11:00:44.904126" }, "relationships": { "variant_set": { "meta": { "count": 5 }, "data": [ { "type": "SmallVariant", "id": "247" }, { "type": "SmallVariant", "id": "250" }, { "type": "SmallVariant", "id": "252" }, { "type": "SmallVariant", "id": "494" }, { "type": "SmallVariant", "id": "1150" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/PDZD7/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/PDZD7/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 3 }, "data": [ { "type": "GeneCombination", "id": "91" }, { "type": "GeneCombination", "id": "92" }, { "type": "GeneCombination", "id": "368" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/PDZD7/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/PDZD7/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/PDZD7/?format=api" } }, { "type": "Gene", "id": "USH2A", "attributes": { "go_molecular_function": [ "['myosin binding', 'collagen binding', 'identical protein binding', 'protein binding']" ], "pathway_id": [], "essential_gene": "Non-essential", "status": "CU", "uniprot_acc": "O75445", "ensembl_id": "None", "entrez_id": "ENSG00000042781", "chromosome_number": "1", "lastmodified": "2021-10-18T11:00:44.596863" }, "relationships": { "variant_set": { "meta": { "count": 16 }, "data": [ { "type": "SmallVariant", "id": "209" }, { "type": "SmallVariant", "id": "215" }, { "type": "SmallVariant", "id": "219" }, { "type": "SmallVariant", "id": "220" }, { "type": "SmallVariant", "id": "222" }, { "type": "SmallVariant", "id": "224" }, { "type": "SmallVariant", "id": "246" }, { "type": "SmallVariant", "id": "248" }, { "type": "SmallVariant", "id": "249" }, { "type": "SmallVariant", "id": "956" }, { "type": "SmallVariant", "id": "957" }, { "type": "SmallVariant", "id": "958" }, { "type": "SmallVariant", "id": "1148" }, { "type": "SmallVariant", "id": "1149" }, { "type": "SmallVariant", "id": "2766" }, { "type": "SmallVariant", "id": "3495" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/USH2A/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/USH2A/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 9 }, "data": [ { "type": "GeneCombination", "id": "81" }, { "type": "GeneCombination", "id": "76" }, { "type": "GeneCombination", "id": "78" }, { "type": "GeneCombination", "id": "80" }, { "type": "GeneCombination", "id": "91" }, { "type": "GeneCombination", "id": "306" }, { "type": "GeneCombination", "id": "368" }, { "type": "GeneCombination", "id": "925" }, { "type": "GeneCombination", "id": "1176" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/USH2A/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/USH2A/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/USH2A/?format=api" } } ], "meta": { "database_name": "OLIgogenic diseases DAtabase (OLIDA)", "resource_url": "olida.ibsquare.be", "api_release_year": "2021", "api_developer": [ [ "Arnau Dillen", "arnau.dillen@ulb.ac.be" ], [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_version": "0.3", "api_maintainers": [ [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_documentation": [ "olida.ibsquare.be/api/swagger", "olida.ibsquare.be/api/redoc" ], "copyright": "Copyright (c) 2024 · OLIDA All Rights Reserved.", "license": "CC Attribution-NonCommercial 4.0 International License", "ontologies": { "ORDO": "http://bioportal.bioontology.org/ontologies/ORDO", "GENO": "http://purl.obolibrary.org/obo/geno.owl", "MI": "http://purl.obolibrary.org/obo/mi.owl", "NCIT": "http://purl.obolibrary.org/obo/ncit.owl", "OGI": "http://purl.obolibrary.org/obo/ogi.owl", "OGG": "http://purl.obolibrary.org/obo/ogg.owl" }, "relevant_publications_doi": [ "10.1093/nar/gkv1068", "10.1093/database/baac023" ], "size": 2 } }