Gene List
This API endpoint handles listing (/genes) and retrieval (/genes/<ID>/) of genes that are contained in the database due to their association to
genetic variants that are involved in at least one oligogenic combination in OLIDA.
GET /api/genecombinations/789/genes/?format=api
{ "data": [ { "type": "Gene", "id": "CYP21A2", "attributes": { "go_molecular_function": [ "iron ion binding", "steroid binding", "steroid 21-monooxygenase activity", "steroid hydroxylase activity", "17-hydroxyprogesterone 21-hydroxylase activity", "heme binding", "progesterone 21-hydroxylase activity" ], "pathway_id": [ "kegg_path:hsa00140", "kegg_path:hsa04934", "kegg_path:hsa04927", "R-HSA-5579021", "R-HSA-8957322", "kegg_path:hsa04925", "kegg_path:hsa00140", "R-HSA-193993", "R-HSA-1430728", "R-HSA-211945", "kegg_path:hsa01100", "R-HSA-211859", "kegg_path:hsa04925", "R-HSA-5668914", "kegg_path:hsa04934", "kegg_path:hsa00140", "R-HSA-211976", "R-HSA-211897", "kegg_path:hsa01100", "kegg_path:hsa04934", "kegg_path:hsa01100", "kegg_path:hsa04927", "R-HSA-211897", "R-HSA-1643685", "R-HSA-5579029", "R-HSA-211976", "kegg_path:hsa00140", "kegg_path:hsa04925", "kegg_path:hsa04934", "R-HSA-556833", "kegg_path:hsa04927", "R-HSA-5668914", "kegg_path:hsa04934", "R-HSA-1643685", "R-HSA-5579029", "kegg_path:hsa04927", "R-HSA-194002", "kegg_path:hsa04934", "kegg_path:hsa01100", "kegg_path:hsa00140", "kegg_path:hsa04927", "R-HSA-5668914", "R-HSA-556833", "R-HSA-556833", "kegg_path:hsa04925", "kegg_path:hsa01100", "R-HSA-194002", "R-HSA-211897", "kegg_path:hsa04927", "R-HSA-211976", "kegg_path:hsa01100", "kegg_path:hsa04934", "R-HSA-1430728", "R-HSA-196071", "R-HSA-8957322", "kegg_path:hsa04925", "R-HSA-5579021", "R-HSA-211859", "kegg_path:hsa04925", "kegg_path:hsa00140", "kegg_path:hsa01100", "kegg_path:hsa04934", "kegg_path:hsa04934", "kegg_path:hsa00140", "R-HSA-211859", "kegg_path:hsa04925", "R-HSA-5579021", "R-HSA-211945", "kegg_path:hsa04927", "kegg_path:hsa00140", "R-HSA-193993", "R-HSA-8957322", "R-HSA-1430728", "R-HSA-196071", "kegg_path:hsa01100", "R-HSA-211945", "kegg_path:hsa00140", "R-HSA-193993", "kegg_path:hsa04925", "R-HSA-196071", "kegg_path:hsa04927", "kegg_path:hsa04927", "kegg_path:hsa01100", "kegg_path:hsa04925", "R-HSA-1643685", "R-HSA-5579029", "R-HSA-194002" ], "essential_gene": null, "status": "CU", "uniprot_acc": "Q16874", "ensembl_id": "ENSG00000231852", "entrez_id": "1589", "chromosome_number": "6", "lastmodified": "2022-08-04T14:14:57.592960" }, "relationships": { "variant_set": { "meta": { "count": 2 }, "data": [ { "type": "SmallVariant", "id": "2252" }, { "type": "SmallVariant", "id": "2339" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/CYP21A2/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/CYP21A2/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 2 }, "data": [ { "type": "GeneCombination", "id": "760" }, { "type": "GeneCombination", "id": "789" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/CYP21A2/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/CYP21A2/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/CYP21A2/?format=api" } }, { "type": "Gene", "id": "MSH4", "attributes": { "go_molecular_function": [ "['DNA binding', 'double-stranded DNA binding', 'protein binding', 'mismatched DNA binding', 'ATP binding']" ], "pathway_id": [ "R-HSA-1474165", "R-HSA-1500620", "R-HSA-1640170", "R-HSA-912446" ], "essential_gene": "Non-essential", "status": "CU", "uniprot_acc": "O15457", "ensembl_id": "None", "entrez_id": "ENSG00000057468", "chromosome_number": "1", "lastmodified": "2021-10-18T11:00:44.794190" }, "relationships": { "variant_set": { "meta": { "count": 5 }, "data": [ { "type": "SmallVariant", "id": "2338" }, { "type": "SmallVariant", "id": "3660" }, { "type": "SmallVariant", "id": "3666" }, { "type": "SmallVariant", "id": "3671" }, { "type": "SmallVariant", "id": "3672" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/MSH4/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/MSH4/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 4 }, "data": [ { "type": "GeneCombination", "id": "789" }, { "type": "GeneCombination", "id": "1231" }, { "type": "GeneCombination", "id": "1234" }, { "type": "GeneCombination", "id": "1238" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/MSH4/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/MSH4/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/MSH4/?format=api" } } ], "meta": { "database_name": "OLIgogenic diseases DAtabase (OLIDA)", "resource_url": "olida.ibsquare.be", "api_release_year": "2021", "api_developer": [ [ "Arnau Dillen", "arnau.dillen@ulb.ac.be" ], [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_version": "0.3", "api_maintainers": [ [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_documentation": [ "olida.ibsquare.be/api/swagger", "olida.ibsquare.be/api/redoc" ], "copyright": "Copyright (c) 2025 · OLIDA All Rights Reserved.", "license": "CC Attribution-NonCommercial 4.0 International License", "ontologies": { "ORDO": "http://bioportal.bioontology.org/ontologies/ORDO", "GENO": "http://purl.obolibrary.org/obo/geno.owl", "MI": "http://purl.obolibrary.org/obo/mi.owl", "NCIT": "http://purl.obolibrary.org/obo/ncit.owl", "OGI": "http://purl.obolibrary.org/obo/ogi.owl", "OGG": "http://purl.obolibrary.org/obo/ogg.owl" }, "relevant_publications_doi": [ "10.1093/nar/gkv1068", "10.1093/database/baac023" ], "size": 2 } }