Gene List
This API endpoint handles listing (/genes) and retrieval (/genes/<ID>/) of genes that are contained in the database due to their association to
genetic variants that are involved in at least one oligogenic combination in OLIDA.
GET /api/genecombinations/787/genes/?format=api
{ "data": [ { "type": "Gene", "id": "HK3", "attributes": { "go_molecular_function": [ "protein binding", "glucokinase activity", "mannokinase activity", "glucose binding", "fructokinase activity", "ATP binding", "hexokinase activity" ], "pathway_id": [ "kegg_path:hsa04910", "kegg_path:hsa05131", "kegg_path:hsa05230", "R-HSA-168256", "kegg_path:hsa00520", "kegg_path:hsa00052", "kegg_path:hsa01200", "kegg_path:hsa04973", "R-HSA-1430728", "R-HSA-70326", "kegg_path:hsa00051", "R-HSA-71387", "kegg_path:hsa04066", "kegg_path:hsa01100", "kegg_path:hsa00524", "kegg_path:hsa00010", "kegg_path:hsa00500", "kegg_path:hsa04930", "kegg_path:hsa04910", "kegg_path:hsa05230", "kegg_path:hsa05131", "kegg_path:hsa00520", "R-HSA-70171", "kegg_path:hsa01200", "kegg_path:hsa00052", "kegg_path:hsa00051", "kegg_path:hsa04973", "kegg_path:hsa01100", "R-HSA-6798695", "kegg_path:hsa04066", "kegg_path:hsa00500", "kegg_path:hsa04930", "R-HSA-168249", "kegg_path:hsa00010", "kegg_path:hsa00524" ], "essential_gene": null, "status": "CU", "uniprot_acc": "P52790", "ensembl_id": "ENSG00000160883", "entrez_id": "3101", "chromosome_number": "5", "lastmodified": "2022-08-04T14:14:59.725248" }, "relationships": { "variant_set": { "meta": { "count": 2 }, "data": [ { "type": "SmallVariant", "id": "2300" }, { "type": "SmallVariant", "id": "2335" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/HK3/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/HK3/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 2 }, "data": [ { "type": "GeneCombination", "id": "771" }, { "type": "GeneCombination", "id": "787" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/HK3/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/HK3/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/HK3/?format=api" } }, { "type": "Gene", "id": "SAMD11", "attributes": { "go_molecular_function": [ "chromatin binding", "histone binding", "protein binding" ], "pathway_id": [], "essential_gene": null, "status": "CU", "uniprot_acc": "Q96NU1", "ensembl_id": "ENSG00000187634", "entrez_id": "148398", "chromosome_number": "1", "lastmodified": "2022-08-04T14:14:59.520075" }, "relationships": { "variant_set": { "meta": { "count": 2 }, "data": [ { "type": "SmallVariant", "id": "2266" }, { "type": "SmallVariant", "id": "2340" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/SAMD11/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/SAMD11/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 6 }, "data": [ { "type": "GeneCombination", "id": "762" }, { "type": "GeneCombination", "id": "765" }, { "type": "GeneCombination", "id": "774" }, { "type": "GeneCombination", "id": "778" }, { "type": "GeneCombination", "id": "787" }, { "type": "GeneCombination", "id": "790" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/SAMD11/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/SAMD11/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/SAMD11/?format=api" } } ], "meta": { "database_name": "OLIgogenic diseases DAtabase (OLIDA)", "resource_url": "olida.ibsquare.be", "api_release_year": "2021", "api_developer": [ [ "Arnau Dillen", "arnau.dillen@ulb.ac.be" ], [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_version": "0.3", "api_maintainers": [ [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_documentation": [ "olida.ibsquare.be/api/swagger", "olida.ibsquare.be/api/redoc" ], "copyright": "Copyright (c) 2025 · OLIDA All Rights Reserved.", "license": "CC Attribution-NonCommercial 4.0 International License", "ontologies": { "ORDO": "http://bioportal.bioontology.org/ontologies/ORDO", "GENO": "http://purl.obolibrary.org/obo/geno.owl", "MI": "http://purl.obolibrary.org/obo/mi.owl", "NCIT": "http://purl.obolibrary.org/obo/ncit.owl", "OGI": "http://purl.obolibrary.org/obo/ogi.owl", "OGG": "http://purl.obolibrary.org/obo/ogg.owl" }, "relevant_publications_doi": [ "10.1093/nar/gkv1068", "10.1093/database/baac023" ], "size": 2 } }