Gene List
This API endpoint handles listing (/genes) and retrieval (/genes/<ID>/) of genes that are contained in the database due to their association to
genetic variants that are involved in at least one oligogenic combination in OLIDA.
GET /api/genecombinations/708/genes/?format=api
{ "data": [ { "type": "Gene", "id": "FIG4", "attributes": { "go_molecular_function": [ "['phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity', 'protein serine/threonine phosphatase activity', 'phosphatidylinositol-4-phosphate phosphatase activity', 'phosphatidylinositol-3-phosphatase activity', 'protein binding', 'phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity', 'phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity']" ], "pathway_id": [ "kegg_path:hsa00562", "kegg_path:hsa01100", "kegg_path:hsa05014", "kegg_path:hsa05022", "R-HSA-1430728", "R-HSA-1483255", "R-HSA-1483257", "R-HSA-1660514", "R-HSA-1660516", "R-HSA-1660517", "R-HSA-556833" ], "essential_gene": "Non-essential", "status": "CU", "uniprot_acc": "Q92562", "ensembl_id": "None", "entrez_id": "ENSG00000112367", "chromosome_number": "6", "lastmodified": "2021-10-18T11:00:44.947126" }, "relationships": { "variant_set": { "meta": { "count": 11 }, "data": [ { "type": "SmallVariant", "id": "549" }, { "type": "SmallVariant", "id": "941" }, { "type": "SmallVariant", "id": "1426" }, { "type": "SmallVariant", "id": "1433" }, { "type": "SmallVariant", "id": "1438" }, { "type": "SmallVariant", "id": "2053" }, { "type": "SmallVariant", "id": "2055" }, { "type": "SmallVariant", "id": "2089" }, { "type": "SmallVariant", "id": "2197" }, { "type": "SmallVariant", "id": "3431" }, { "type": "SmallVariant", "id": "3439" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/FIG4/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/FIG4/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 8 }, "data": [ { "type": "GeneCombination", "id": "187" }, { "type": "GeneCombination", "id": "300" }, { "type": "GeneCombination", "id": "449" }, { "type": "GeneCombination", "id": "453" }, { "type": "GeneCombination", "id": "456" }, { "type": "GeneCombination", "id": "708" }, { "type": "GeneCombination", "id": "723" }, { "type": "GeneCombination", "id": "1154" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/FIG4/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/FIG4/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/FIG4/?format=api" } }, { "type": "Gene", "id": "NEK1", "attributes": { "go_molecular_function": [ "['protein tyrosine kinase activity', 'protein serine kinase activity', 'protein serine/threonine/tyrosine kinase activity', 'protein binding', 'protein kinase activity', 'protein serine/threonine kinase activity', '14-3-3 protein binding', 'metal ion binding', 'kinase activity', 'ATP binding']" ], "pathway_id": [], "essential_gene": "Essential", "status": "CU", "uniprot_acc": "Q96PY6", "ensembl_id": "None", "entrez_id": "ENSG00000137601", "chromosome_number": "4", "lastmodified": "2021-10-18T11:00:44.841783" }, "relationships": { "variant_set": { "meta": { "count": 22 }, "data": [ { "type": "SmallVariant", "id": "976" }, { "type": "SmallVariant", "id": "1369" }, { "type": "SmallVariant", "id": "1814" }, { "type": "SmallVariant", "id": "2052" }, { "type": "SmallVariant", "id": "2056" }, { "type": "SmallVariant", "id": "2062" }, { "type": "SmallVariant", "id": "2085" }, { "type": "SmallVariant", "id": "2096" }, { "type": "SmallVariant", "id": "2132" }, { "type": "SmallVariant", "id": "2138" }, { "type": "SmallVariant", "id": "2188" }, { "type": "SmallVariant", "id": "2190" }, { "type": "SmallVariant", "id": "2191" }, { "type": "SmallVariant", "id": "2193" }, { "type": "SmallVariant", "id": "2194" }, { "type": "SmallVariant", "id": "2196" }, { "type": "SmallVariant", "id": "2198" }, { "type": "SmallVariant", "id": "3352" }, { "type": "SmallVariant", "id": "3414" }, { "type": "SmallVariant", "id": "3425" }, { "type": "SmallVariant", "id": "3427" }, { "type": "SmallVariant", "id": "3430" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/NEK1/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/NEK1/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 18 }, "data": [ { "type": "GeneCombination", "id": "748" }, { "type": "GeneCombination", "id": "749" }, { "type": "GeneCombination", "id": "313" }, { "type": "GeneCombination", "id": "428" }, { "type": "GeneCombination", "id": "599" }, { "type": "GeneCombination", "id": "600" }, { "type": "GeneCombination", "id": "707" }, { "type": "GeneCombination", "id": "708" }, { "type": "GeneCombination", "id": "711" }, { "type": "GeneCombination", "id": "727" }, { "type": "GeneCombination", "id": "726" }, { "type": "GeneCombination", "id": "725" }, { "type": "GeneCombination", "id": "721" }, { "type": "GeneCombination", "id": "734" }, { "type": "GeneCombination", "id": "747" }, { "type": "GeneCombination", "id": "735" }, { "type": "GeneCombination", "id": "1128" }, { "type": "GeneCombination", "id": "1145" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/NEK1/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/NEK1/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/NEK1/?format=api" } } ], "meta": { "database_name": "OLIgogenic diseases DAtabase (OLIDA)", "resource_url": "olida.ibsquare.be", "api_release_year": "2021", "api_developer": [ [ "Arnau Dillen", "arnau.dillen@ulb.ac.be" ], [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_version": "0.3", "api_maintainers": [ [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_documentation": [ "olida.ibsquare.be/api/swagger", "olida.ibsquare.be/api/redoc" ], "copyright": "Copyright (c) 2024 · OLIDA All Rights Reserved.", "license": "CC Attribution-NonCommercial 4.0 International License", "ontologies": { "ORDO": "http://bioportal.bioontology.org/ontologies/ORDO", "GENO": "http://purl.obolibrary.org/obo/geno.owl", "MI": "http://purl.obolibrary.org/obo/mi.owl", "NCIT": "http://purl.obolibrary.org/obo/ncit.owl", "OGI": "http://purl.obolibrary.org/obo/ogi.owl", "OGG": "http://purl.obolibrary.org/obo/ogg.owl" }, "relevant_publications_doi": [ "10.1093/nar/gkv1068", "10.1093/database/baac023" ], "size": 2 } }