Gene List
This API endpoint handles listing (/genes) and retrieval (/genes/<ID>/) of genes that are contained in the database due to their association to
genetic variants that are involved in at least one oligogenic combination in OLIDA.
GET /api/genecombinations/694/genes/?format=api
{ "data": [ { "type": "Gene", "id": "ALDH5A1", "attributes": { "go_molecular_function": [ "identical protein binding", "succinate-semialdehyde dehydrogenase (NAD+) activity" ], "pathway_id": [ "R-HSA-916853", "kegg_path:hsa01100", "kegg_path:hsa01100", "R-HSA-112315", "R-HSA-112316", "kegg_path:hsa00650", "kegg_path:hsa00250", "kegg_path:hsa00650", "R-HSA-112310", "R-HSA-888590", "kegg_path:hsa00250" ], "essential_gene": "Essential", "status": "CU", "uniprot_acc": "P51649", "ensembl_id": "ENSG00000112294", "entrez_id": "7915", "chromosome_number": "6", "lastmodified": "2022-08-04T14:15:00.042064" }, "relationships": { "variant_set": { "meta": { "count": 2 }, "data": [ { "type": "SmallVariant", "id": "2014" }, { "type": "SmallVariant", "id": "2015" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/ALDH5A1/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/ALDH5A1/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 1 }, "data": [ { "type": "GeneCombination", "id": "694" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/ALDH5A1/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/ALDH5A1/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/ALDH5A1/?format=api" } }, { "type": "Gene", "id": "ATG7", "attributes": { "go_molecular_function": [ "protein homodimerization activity", "Atg8 activating enzyme activity", "protein binding", "Atg12 activating enzyme activity" ], "pathway_id": [ "R-HSA-6802952", "R-HSA-983168", "R-HSA-168256", "kegg_path:hsa04613", "kegg_path:hsa04136", "kegg_path:hsa04140", "R-HSA-5663202", "R-HSA-1280218", "R-HSA-168249", "R-HSA-1643685", "kegg_path:hsa04216", "R-HSA-6802957", "R-HSA-1632852", "R-HSA-6798695", "R-HSA-983169", "R-HSA-9612973" ], "essential_gene": "Essential", "status": "CU", "uniprot_acc": "O95352", "ensembl_id": "ENSG00000197548", "entrez_id": "10533", "chromosome_number": "3", "lastmodified": "2022-08-04T14:14:58.001878" }, "relationships": { "variant_set": { "meta": { "count": 1 }, "data": [ { "type": "SmallVariant", "id": "2018" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/ATG7/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/ATG7/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 1 }, "data": [ { "type": "GeneCombination", "id": "694" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/ATG7/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/ATG7/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/ATG7/?format=api" } }, { "type": "Gene", "id": "DIP2C", "attributes": { "go_molecular_function": [ "molecular_function" ], "pathway_id": [], "essential_gene": null, "status": "CU", "uniprot_acc": "Q9Y2E4", "ensembl_id": "ENSG00000151240", "entrez_id": "22982", "chromosome_number": "10", "lastmodified": "2022-08-04T14:14:59.069838" }, "relationships": { "variant_set": { "meta": { "count": 1 }, "data": [ { "type": "SmallVariant", "id": "2017" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/DIP2C/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/DIP2C/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 1 }, "data": [ { "type": "GeneCombination", "id": "694" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/DIP2C/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/DIP2C/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/DIP2C/?format=api" } }, { "type": "Gene", "id": "HUWE1", "attributes": { "go_molecular_function": [ "ubiquitin-protein transferase activity", "ubiquitin protein ligase activity", "protein binding", "DNA binding", "RNA binding" ], "pathway_id": [ "R-HSA-983169", "kegg_path:hsa04120", "R-HSA-6798695", "kegg_path:hsa04120", "R-HSA-983169", "R-HSA-6798695", "R-HSA-983168", "kegg_path:hsa04120", "R-HSA-1280218", "R-HSA-168249", "R-HSA-168256", "R-HSA-983168", "R-HSA-168256", "kegg_path:hsa04120", "R-HSA-1280218", "R-HSA-168249" ], "essential_gene": "Essential", "status": "CU", "uniprot_acc": "Q7Z6Z7", "ensembl_id": "ENSG00000086758", "entrez_id": "10075", "chromosome_number": "X", "lastmodified": "2022-08-04T14:14:58.777980" }, "relationships": { "variant_set": { "meta": { "count": 1 }, "data": [ { "type": "SmallVariant", "id": "2012" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/HUWE1/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/HUWE1/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 1 }, "data": [ { "type": "GeneCombination", "id": "694" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/HUWE1/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/HUWE1/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/HUWE1/?format=api" } }, { "type": "Gene", "id": "ITPR3", "attributes": { "go_molecular_function": [ "inositol 1,4,5 trisphosphate binding", "calcium ion binding", "inositol hexakisphosphate binding", "protein binding", "inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity", "inositol 1,3,4,5 tetrakisphosphate binding", "phosphatidylinositol binding", "calcium-release channel activity" ], "pathway_id": [ "R-HSA-168256", "kegg_path:hsa04911", "kegg_path:hsa05167", "kegg_path:hsa04929", "R-HSA-388396", "R-HSA-5607764", "kegg_path:hsa04971", "R-HSA-397014", "kegg_path:hsa05012", "kegg_path:hsa04270", "kegg_path:hsa04713", "kegg_path:hsa04970", "kegg_path:hsa04070", "kegg_path:hsa05010", "kegg_path:hsa04728", "kegg_path:hsa04750", "R-HSA-2454202", "kegg_path:hsa05017", "R-HSA-9662851", "kegg_path:hsa04928", "kegg_path:hsa05163", "kegg_path:hsa04922", "kegg_path:hsa04022", "kegg_path:hsa04020", "kegg_path:hsa04915", "kegg_path:hsa04934", "kegg_path:hsa05131", "R-HSA-111885", "R-HSA-112040", "kegg_path:hsa04918", "R-HSA-422356", "kegg_path:hsa04972", "kegg_path:hsa05020", "R-HSA-5621481", "kegg_path:hsa05170", "kegg_path:hsa04730", "R-HSA-5607763", "R-HSA-9006934", "kegg_path:hsa04540", "R-HSA-4420097", "R-HSA-5218921", "kegg_path:hsa04925", "kegg_path:hsa05022", "R-HSA-9664323", "kegg_path:hsa04724", "R-HSA-9658195", "kegg_path:hsa04218", "R-HSA-139853", "kegg_path:hsa05014", "kegg_path:hsa04924", "R-HSA-9664433", "kegg_path:hsa04114", "kegg_path:hsa04625", "kegg_path:hsa04720", "kegg_path:hsa04912", "kegg_path:hsa04742", "kegg_path:hsa04210", "kegg_path:hsa04621", "kegg_path:hsa04371", "kegg_path:hsa04723", "R-HSA-372790", "R-HSA-9006925", "R-HSA-5578775", "R-HSA-416476", "kegg_path:hsa04927", "R-HSA-381676", "kegg_path:hsa04935", "kegg_path:hsa04611", "R-HSA-76002", "kegg_path:hsa04726", "kegg_path:hsa04921", "R-HSA-983695", "kegg_path:hsa05205", "kegg_path:hsa04725", "kegg_path:hsa04730", "kegg_path:hsa04918", "kegg_path:hsa04972", "R-HSA-2029480", "kegg_path:hsa05170", "R-HSA-1430728", "kegg_path:hsa05020", "kegg_path:hsa05014", "kegg_path:hsa04218", "kegg_path:hsa04924", "R-HSA-114508", "kegg_path:hsa04540", "R-HSA-194138", "R-HSA-4086398", "kegg_path:hsa04724", "kegg_path:hsa04925", "kegg_path:hsa05022", "kegg_path:hsa04971", "R-HSA-1489509", "R-HSA-418360", "kegg_path:hsa04070", "kegg_path:hsa05010", "R-HSA-168249", "kegg_path:hsa05012", "kegg_path:hsa04270", "kegg_path:hsa04713", "kegg_path:hsa04970", "kegg_path:hsa04911", "R-HSA-109582", "kegg_path:hsa05167", "kegg_path:hsa04929", "kegg_path:hsa04915", "kegg_path:hsa04022", "R-HSA-162582", "kegg_path:hsa04020", "kegg_path:hsa04934", "kegg_path:hsa05131", "R-HSA-5663205", "kegg_path:hsa04750", "kegg_path:hsa04728", "kegg_path:hsa04922", "kegg_path:hsa05017", "kegg_path:hsa04928", "kegg_path:hsa05163", "R-HSA-5576891", "R-HSA-163685", "kegg_path:hsa04927", "kegg_path:hsa04935", "kegg_path:hsa04611", "R-HSA-983705", "kegg_path:hsa04725", "kegg_path:hsa05205", "R-HSA-195721", "R-HSA-3858494", "kegg_path:hsa04726", "R-HSA-2871809", "kegg_path:hsa04921", "R-HSA-112043", "kegg_path:hsa04742", "R-HSA-1280218", "kegg_path:hsa04210", "R-HSA-1643685", "kegg_path:hsa04114", "kegg_path:hsa04625", "kegg_path:hsa04912", "kegg_path:hsa04720", "R-HSA-2029485", "kegg_path:hsa04723", "R-HSA-418594", "kegg_path:hsa04621", "R-HSA-418346", "kegg_path:hsa04371" ], "essential_gene": "Non-essential", "status": "CU", "uniprot_acc": "Q14573", "ensembl_id": "ENSG00000096433", "entrez_id": "3710", "chromosome_number": "6", "lastmodified": "2022-08-04T14:14:59.658489" }, "relationships": { "variant_set": { "meta": { "count": 1 }, "data": [ { "type": "SmallVariant", "id": "2016" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/ITPR3/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/ITPR3/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 1 }, "data": [ { "type": "GeneCombination", "id": "694" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/ITPR3/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/ITPR3/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/ITPR3/?format=api" } }, { "type": "Gene", "id": "TPH2", "attributes": { "go_molecular_function": [ "iron ion binding", "tryptophan 5-monooxygenase activity" ], "pathway_id": [ "R-HSA-1430728", "kegg_path:hsa00380", "R-HSA-209776", "R-HSA-71291", "kegg_path:hsa00790", "kegg_path:hsa01100", "R-HSA-209931", "kegg_path:hsa04726" ], "essential_gene": "Non-essential", "status": "CU", "uniprot_acc": "Q8IWU9", "ensembl_id": "ENSG00000139287", "entrez_id": "121278", "chromosome_number": "12", "lastmodified": "2022-08-04T14:14:58.202091" }, "relationships": { "variant_set": { "meta": { "count": 1 }, "data": [ { "type": "SmallVariant", "id": "2013" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/TPH2/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/TPH2/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 1 }, "data": [ { "type": "GeneCombination", "id": "694" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/TPH2/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/TPH2/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/TPH2/?format=api" } } ], "meta": { "database_name": "OLIgogenic diseases DAtabase (OLIDA)", "resource_url": "olida.ibsquare.be", "api_release_year": "2021", "api_developer": [ [ "Arnau Dillen", "arnau.dillen@ulb.ac.be" ], [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_version": "0.3", "api_maintainers": [ [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_documentation": [ "olida.ibsquare.be/api/swagger", "olida.ibsquare.be/api/redoc" ], "copyright": "Copyright (c) 2025 · OLIDA All Rights Reserved.", "license": "CC Attribution-NonCommercial 4.0 International License", "ontologies": { "ORDO": "http://bioportal.bioontology.org/ontologies/ORDO", "GENO": "http://purl.obolibrary.org/obo/geno.owl", "MI": "http://purl.obolibrary.org/obo/mi.owl", "NCIT": "http://purl.obolibrary.org/obo/ncit.owl", "OGI": "http://purl.obolibrary.org/obo/ogi.owl", "OGG": "http://purl.obolibrary.org/obo/ogg.owl" }, "relevant_publications_doi": [ "10.1093/nar/gkv1068", "10.1093/database/baac023" ], "size": 6 } }