Gene List
This API endpoint handles listing (/genes) and retrieval (/genes/<ID>/) of genes that are contained in the database due to their association to
genetic variants that are involved in at least one oligogenic combination in OLIDA.
GET /api/genecombinations/693/genes/?format=api
{ "data": [ { "type": "Gene", "id": "ODAD2", "attributes": { "go_molecular_function": [ "protein binding" ], "pathway_id": [], "essential_gene": null, "status": "CU", "uniprot_acc": "Q5T2S8", "ensembl_id": "ENSG00000169126", "entrez_id": "55130", "chromosome_number": "10", "lastmodified": "2022-08-04T14:14:59.036483" }, "relationships": { "variant_set": { "meta": { "count": 1 }, "data": [ { "type": "SmallVariant", "id": "2011" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/ODAD2/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/ODAD2/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 1 }, "data": [ { "type": "GeneCombination", "id": "693" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/ODAD2/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/ODAD2/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/ODAD2/?format=api" } }, { "type": "Gene", "id": "TREX1", "attributes": { "go_molecular_function": [ "DNA binding, bending", "single-stranded DNA binding", "MutSalpha complex binding", "double-stranded DNA binding", "exodeoxyribonuclease III activity", "protein homodimerization activity", "MutLalpha complex binding", "metal ion binding", "WW domain binding", "magnesium ion binding", "3'-5' exonuclease activity", "adenyl deoxyribonucleotide binding", "3'-5'-exodeoxyribonuclease activity" ], "pathway_id": [ "R-HSA-3134975", "R-HSA-168249", "R-HSA-3248023", "R-HSA-168256", "kegg_path:hsa03460", "R-HSA-1834941", "R-HSA-1834949", "R-HSA-3270619", "kegg_path:hsa04623" ], "essential_gene": "Non-essential", "status": "CU", "uniprot_acc": "Q9NSU2", "ensembl_id": "ENSG00000213689", "entrez_id": "11277", "chromosome_number": "3", "lastmodified": "2022-08-04T14:14:59.608526" }, "relationships": { "variant_set": { "meta": { "count": 1 }, "data": [ { "type": "SmallVariant", "id": "2010" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/TREX1/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/TREX1/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 1 }, "data": [ { "type": "GeneCombination", "id": "693" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/TREX1/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/TREX1/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/TREX1/?format=api" } } ], "meta": { "database_name": "OLIgogenic diseases DAtabase (OLIDA)", "resource_url": "olida.ibsquare.be", "api_release_year": "2021", "api_developer": [ [ "Arnau Dillen", "arnau.dillen@ulb.ac.be" ], [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_version": "0.3", "api_maintainers": [ [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_documentation": [ "olida.ibsquare.be/api/swagger", "olida.ibsquare.be/api/redoc" ], "copyright": "Copyright (c) 2024 · OLIDA All Rights Reserved.", "license": "CC Attribution-NonCommercial 4.0 International License", "ontologies": { "ORDO": "http://bioportal.bioontology.org/ontologies/ORDO", "GENO": "http://purl.obolibrary.org/obo/geno.owl", "MI": "http://purl.obolibrary.org/obo/mi.owl", "NCIT": "http://purl.obolibrary.org/obo/ncit.owl", "OGI": "http://purl.obolibrary.org/obo/ogi.owl", "OGG": "http://purl.obolibrary.org/obo/ogg.owl" }, "relevant_publications_doi": [ "10.1093/nar/gkv1068", "10.1093/database/baac023" ], "size": 2 } }