Gene List
This API endpoint handles listing (/genes) and retrieval (/genes/<ID>/) of genes that are contained in the database due to their association to
genetic variants that are involved in at least one oligogenic combination in OLIDA.
GET /api/genecombinations/555/genes/?format=api
{ "data": [ { "type": "Gene", "id": "CYP1B1", "attributes": { "go_molecular_function": [ "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen", "monooxygenase activity", "heme binding", "iron ion binding" ], "pathway_id": [ "kegg_path:hsa00980", "kegg_path:hsa05204", "R-HSA-5579000", "R-HSA-2142753", "kegg_path:hsa00380", "R-HSA-211945", "kegg_path:hsa05206", "kegg_path:hsa00140", "R-HSA-556833", "kegg_path:hsa04913", "kegg_path:hsa05204", "R-HSA-1430728", "R-HSA-2142816", "kegg_path:hsa00980", "R-HSA-5668914", "kegg_path:hsa04913", "kegg_path:hsa00140", "kegg_path:hsa05206", "R-HSA-1643685", "R-HSA-2142670", "R-HSA-5579029", "R-HSA-8978868", "kegg_path:hsa00380", "R-HSA-211897", "R-HSA-211859", "R-HSA-211976" ], "essential_gene": "Non-essential", "status": "CU", "uniprot_acc": "Q16678", "ensembl_id": "ENSG00000138061", "entrez_id": "1545", "chromosome_number": "2", "lastmodified": "2021-10-18T11:00:44.425252" }, "relationships": { "variant_set": { "meta": { "count": 6 }, "data": [ { "type": "SmallVariant", "id": "18" }, { "type": "SmallVariant", "id": "20" }, { "type": "SmallVariant", "id": "22" }, { "type": "SmallVariant", "id": "1698" }, { "type": "SmallVariant", "id": "1699" }, { "type": "SmallVariant", "id": "1701" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/CYP1B1/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/CYP1B1/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 3 }, "data": [ { "type": "GeneCombination", "id": "8" }, { "type": "GeneCombination", "id": "120" }, { "type": "GeneCombination", "id": "555" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/CYP1B1/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/CYP1B1/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/CYP1B1/?format=api" } }, { "type": "Gene", "id": "PITX2", "attributes": { "go_molecular_function": [ "protein binding", "DNA-binding transcription factor activity, RNA polymerase II-specific", "transcription cis-regulatory region binding", "sequence-specific double-stranded DNA binding", "DNA-binding transcription factor activity", "RNA polymerase II-specific DNA-binding transcription factor binding", "RNA polymerase II cis-regulatory region sequence-specific DNA binding" ], "pathway_id": [ "R-HSA-8864260", "kegg_path:hsa04350", "R-HSA-74160", "R-HSA-212436", "R-HSA-73857", "R-HSA-8866906" ], "essential_gene": "Essential", "status": "CU", "uniprot_acc": "Q99697", "ensembl_id": "ENSG00000164093", "entrez_id": "5308", "chromosome_number": "4", "lastmodified": "2021-10-18T11:00:44.289625" }, "relationships": { "variant_set": { "meta": { "count": 4 }, "data": [ { "type": "SmallVariant", "id": "492" }, { "type": "SmallVariant", "id": "1700" }, { "type": "SmallVariant", "id": "1702" }, { "type": "SmallVariant", "id": "2515" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/PITX2/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/PITX2/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 3 }, "data": [ { "type": "GeneCombination", "id": "165" }, { "type": "GeneCombination", "id": "555" }, { "type": "GeneCombination", "id": "853" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/PITX2/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/PITX2/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/PITX2/?format=api" } } ], "meta": { "database_name": "OLIgogenic diseases DAtabase (OLIDA)", "resource_url": "olida.ibsquare.be", "api_release_year": "2021", "api_developer": [ [ "Arnau Dillen", "arnau.dillen@ulb.ac.be" ], [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_version": "0.3", "api_maintainers": [ [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_documentation": [ "olida.ibsquare.be/api/swagger", "olida.ibsquare.be/api/redoc" ], "copyright": "Copyright (c) 2025 · OLIDA All Rights Reserved.", "license": "CC Attribution-NonCommercial 4.0 International License", "ontologies": { "ORDO": "http://bioportal.bioontology.org/ontologies/ORDO", "GENO": "http://purl.obolibrary.org/obo/geno.owl", "MI": "http://purl.obolibrary.org/obo/mi.owl", "NCIT": "http://purl.obolibrary.org/obo/ncit.owl", "OGI": "http://purl.obolibrary.org/obo/ogi.owl", "OGG": "http://purl.obolibrary.org/obo/ogg.owl" }, "relevant_publications_doi": [ "10.1093/nar/gkv1068", "10.1093/database/baac023" ], "size": 2 } }