Gene List
This API endpoint handles listing (/genes) and retrieval (/genes/<ID>/) of genes that are contained in the database due to their association to
genetic variants that are involved in at least one oligogenic combination in OLIDA.
GET /api/genecombinations/532/genes/?format=api
{ "data": [ { "type": "Gene", "id": "BHMT", "attributes": { "go_molecular_function": [ "transferase activity", "zinc ion binding", "methyltransferase activity", "metal ion binding", "betaine-homocysteine S-methyltransferase activity" ], "pathway_id": [ "R-HSA-71291", "kegg_path:hsa01100", "R-HSA-1430728", "R-HSA-1614635", "kegg_path:hsa00260", "R-HSA-6798163", "kegg_path:hsa00270" ], "essential_gene": "Non-essential", "status": "CU", "uniprot_acc": "Q93088", "ensembl_id": "ENSG00000145692", "entrez_id": "635", "chromosome_number": "5", "lastmodified": "2021-10-18T11:00:44.602607" }, "relationships": { "variant_set": { "meta": { "count": 2 }, "data": [ { "type": "SmallVariant", "id": "1579" }, { "type": "SmallVariant", "id": "1603" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/BHMT/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/BHMT/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 3 }, "data": [ { "type": "GeneCombination", "id": "508" }, { "type": "GeneCombination", "id": "515" }, { "type": "GeneCombination", "id": "532" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/BHMT/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/BHMT/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/BHMT/?format=api" } }, { "type": "Gene", "id": "SHMT1", "attributes": { "go_molecular_function": [ "pyridoxal phosphate binding", "mRNA 5'-UTR binding", "cobalt ion binding", "catalytic activity", "serine binding", "protein homodimerization activity", "zinc ion binding", "glycine hydroxymethyltransferase activity", "translation repressor activity, mRNA regulatory element binding" ], "pathway_id": [ "kegg_path:hsa01230", "R-HSA-1430728", "kegg_path:hsa01523", "kegg_path:hsa01100", "R-HSA-71291", "R-HSA-196849", "kegg_path:hsa00630", "R-HSA-196854", "R-HSA-71262", "kegg_path:hsa01240", "R-HSA-196757", "kegg_path:hsa01200", "kegg_path:hsa00670", "kegg_path:hsa00260" ], "essential_gene": "Non-essential", "status": "CU", "uniprot_acc": "P34896", "ensembl_id": "ENSG00000176974", "entrez_id": "6470", "chromosome_number": "17", "lastmodified": "2021-10-18T11:00:44.621439" }, "relationships": { "variant_set": { "meta": { "count": 1 }, "data": [ { "type": "SmallVariant", "id": "1641" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/SHMT1/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/SHMT1/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 1 }, "data": [ { "type": "GeneCombination", "id": "532" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/SHMT1/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/SHMT1/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/SHMT1/?format=api" } } ], "meta": { "database_name": "OLIgogenic diseases DAtabase (OLIDA)", "resource_url": "olida.ibsquare.be", "api_release_year": "2021", "api_developer": [ [ "Arnau Dillen", "arnau.dillen@ulb.ac.be" ], [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_version": "0.3", "api_maintainers": [ [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_documentation": [ "olida.ibsquare.be/api/swagger", "olida.ibsquare.be/api/redoc" ], "copyright": "Copyright (c) 2025 · OLIDA All Rights Reserved.", "license": "CC Attribution-NonCommercial 4.0 International License", "ontologies": { "ORDO": "http://bioportal.bioontology.org/ontologies/ORDO", "GENO": "http://purl.obolibrary.org/obo/geno.owl", "MI": "http://purl.obolibrary.org/obo/mi.owl", "NCIT": "http://purl.obolibrary.org/obo/ncit.owl", "OGI": "http://purl.obolibrary.org/obo/ogi.owl", "OGG": "http://purl.obolibrary.org/obo/ogg.owl" }, "relevant_publications_doi": [ "10.1093/nar/gkv1068", "10.1093/database/baac023" ], "size": 2 } }