Gene List
This API endpoint handles listing (/genes) and retrieval (/genes/<ID>/) of genes that are contained in the database due to their association to
genetic variants that are involved in at least one oligogenic combination in OLIDA.
GET /api/genecombinations/2/genes/?format=api
{ "data": [ { "type": "Gene", "id": "BMPR2", "attributes": { "go_molecular_function": [ "['BMP receptor activity', 'signaling receptor activator activity', 'phosphatase activator activity', 'cadherin binding', 'protein binding', 'transforming growth factor beta-activated receptor activity', 'protein tyrosine kinase binding', 'protein serine/threonine kinase activity', 'protein serine/threonine kinase activator activity', 'activin receptor activity, type II', 'metal ion binding', 'BMP binding', 'ATP binding']" ], "pathway_id": [ "kegg_path:hsa04060", "kegg_path:hsa04350", "kegg_path:hsa04360", "kegg_path:hsa04390", "kegg_path:hsa04550", "kegg_path:hsa05206", "kegg_path:hsa05418", "R-HSA-162582", "R-HSA-201451", "R-HSA-9006936" ], "essential_gene": "Essential", "status": "CU", "uniprot_acc": "Q13873", "ensembl_id": "None", "entrez_id": "ENSG00000204217", "chromosome_number": "2", "lastmodified": "2021-10-18T11:00:44.330022" }, "relationships": { "variant_set": { "meta": { "count": 4 }, "data": [ { "type": "CopyNumberVariant", "id": "6" }, { "type": "SmallVariant", "id": "3" }, { "type": "SmallVariant", "id": "464" }, { "type": "SmallVariant", "id": "3668" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/BMPR2/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/BMPR2/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 3 }, "data": [ { "type": "GeneCombination", "id": "2" }, { "type": "GeneCombination", "id": "154" }, { "type": "GeneCombination", "id": "1236" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/BMPR2/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/BMPR2/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/BMPR2/?format=api" } }, { "type": "Gene", "id": "NOTCH3", "attributes": { "go_molecular_function": [ "calcium ion binding", "protein binding", "enzyme binding", "identical protein binding", "signaling receptor activity", "cadherin binding" ], "pathway_id": [ "kegg_path:hsa05200", "R-HSA-350054", "R-HSA-74160", "R-HSA-9013508", "R-HSA-162582", "R-HSA-1912399", "R-HSA-1912408", "kegg_path:hsa04330", "kegg_path:hsa05165", "R-HSA-3906995", "kegg_path:hsa04658", "kegg_path:hsa05224", "R-HSA-1912422", "R-HSA-9012852", "kegg_path:hsa04371", "R-HSA-9013507", "R-HSA-212436", "kegg_path:hsa01522", "kegg_path:hsa05206", "R-HSA-1643685", "R-HSA-3781865", "R-HSA-9017802", "R-HSA-5668914", "kegg_path:hsa04919", "R-HSA-157118", "R-HSA-1912420", "R-HSA-5083630", "R-HSA-73857" ], "essential_gene": "Non-essential", "status": "CU", "uniprot_acc": "Q9UM47", "ensembl_id": "ENSG00000074181", "entrez_id": "4854", "chromosome_number": "19", "lastmodified": "2021-10-18T11:00:44.357155" }, "relationships": { "variant_set": { "meta": { "count": 4 }, "data": [ { "type": "SmallVariant", "id": "4" }, { "type": "SmallVariant", "id": "5" }, { "type": "SmallVariant", "id": "8" }, { "type": "SmallVariant", "id": "2273" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/NOTCH3/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/NOTCH3/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 3 }, "data": [ { "type": "GeneCombination", "id": "2" }, { "type": "GeneCombination", "id": "3" }, { "type": "GeneCombination", "id": "764" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/NOTCH3/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/NOTCH3/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/NOTCH3/?format=api" } } ], "meta": { "database_name": "OLIgogenic diseases DAtabase (OLIDA)", "resource_url": "olida.ibsquare.be", "api_release_year": "2021", "api_developer": [ [ "Arnau Dillen", "arnau.dillen@ulb.ac.be" ], [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_version": "0.3", "api_maintainers": [ [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_documentation": [ "olida.ibsquare.be/api/swagger", "olida.ibsquare.be/api/redoc" ], "copyright": "Copyright (c) 2025 · OLIDA All Rights Reserved.", "license": "CC Attribution-NonCommercial 4.0 International License", "ontologies": { "ORDO": "http://bioportal.bioontology.org/ontologies/ORDO", "GENO": "http://purl.obolibrary.org/obo/geno.owl", "MI": "http://purl.obolibrary.org/obo/mi.owl", "NCIT": "http://purl.obolibrary.org/obo/ncit.owl", "OGI": "http://purl.obolibrary.org/obo/ogi.owl", "OGG": "http://purl.obolibrary.org/obo/ogg.owl" }, "relevant_publications_doi": [ "10.1093/nar/gkv1068", "10.1093/database/baac023" ], "size": 2 } }