Gene List
This API endpoint handles listing (/genes) and retrieval (/genes/<ID>/) of genes that are contained in the database due to their association to
genetic variants that are involved in at least one oligogenic combination in OLIDA.
GET /api/genecombinations/1231/genes/?format=api
{ "data": [ { "type": "Gene", "id": "MSH4", "attributes": { "go_molecular_function": [ "['DNA binding', 'double-stranded DNA binding', 'protein binding', 'mismatched DNA binding', 'ATP binding']" ], "pathway_id": [ "R-HSA-1474165", "R-HSA-1500620", "R-HSA-1640170", "R-HSA-912446" ], "essential_gene": "Non-essential", "status": "CU", "uniprot_acc": "O15457", "ensembl_id": "None", "entrez_id": "ENSG00000057468", "chromosome_number": "1", "lastmodified": "2021-10-18T11:00:44.794190" }, "relationships": { "variant_set": { "meta": { "count": 5 }, "data": [ { "type": "SmallVariant", "id": "2338" }, { "type": "SmallVariant", "id": "3660" }, { "type": "SmallVariant", "id": "3666" }, { "type": "SmallVariant", "id": "3671" }, { "type": "SmallVariant", "id": "3672" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/MSH4/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/MSH4/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 4 }, "data": [ { "type": "GeneCombination", "id": "789" }, { "type": "GeneCombination", "id": "1231" }, { "type": "GeneCombination", "id": "1234" }, { "type": "GeneCombination", "id": "1238" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/MSH4/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/MSH4/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/MSH4/?format=api" } }, { "type": "Gene", "id": "MSH5", "attributes": { "go_molecular_function": [ "['mismatched DNA binding', 'double-stranded DNA binding', 'protein binding', 'ATP binding']" ], "pathway_id": [ "R-HSA-1474165", "R-HSA-1500620", "R-HSA-1640170", "R-HSA-912446", "R-HSA-1474165", "R-HSA-1500620", "R-HSA-1640170", "R-HSA-912446", "R-HSA-1474165", "R-HSA-1500620", "R-HSA-1640170", "R-HSA-912446", "R-HSA-1474165", "R-HSA-1500620", "R-HSA-1640170", "R-HSA-912446", "R-HSA-1474165", "R-HSA-1500620", "R-HSA-1640170", "R-HSA-912446" ], "essential_gene": "Non-essential", "status": "CU", "uniprot_acc": "A0A140T982", "ensembl_id": "None", "entrez_id": "ENSG00000204410", "chromosome_number": "6", "lastmodified": "2024-02-29T15:02:20.867387" }, "relationships": { "variant_set": { "meta": { "count": 2 }, "data": [ { "type": "SmallVariant", "id": "3659" }, { "type": "SmallVariant", "id": "3670" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/MSH5/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/MSH5/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 2 }, "data": [ { "type": "GeneCombination", "id": "1231" }, { "type": "GeneCombination", "id": "1238" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/MSH5/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/MSH5/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/MSH5/?format=api" } } ], "meta": { "database_name": "OLIgogenic diseases DAtabase (OLIDA)", "resource_url": "olida.ibsquare.be", "api_release_year": "2021", "api_developer": [ [ "Arnau Dillen", "arnau.dillen@ulb.ac.be" ], [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_version": "0.3", "api_maintainers": [ [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_documentation": [ "olida.ibsquare.be/api/swagger", "olida.ibsquare.be/api/redoc" ], "copyright": "Copyright (c) 2025 · OLIDA All Rights Reserved.", "license": "CC Attribution-NonCommercial 4.0 International License", "ontologies": { "ORDO": "http://bioportal.bioontology.org/ontologies/ORDO", "GENO": "http://purl.obolibrary.org/obo/geno.owl", "MI": "http://purl.obolibrary.org/obo/mi.owl", "NCIT": "http://purl.obolibrary.org/obo/ncit.owl", "OGI": "http://purl.obolibrary.org/obo/ogi.owl", "OGG": "http://purl.obolibrary.org/obo/ogg.owl" }, "relevant_publications_doi": [ "10.1093/nar/gkv1068", "10.1093/database/baac023" ], "size": 2 } }