Gene List
This API endpoint handles listing (/genes) and retrieval (/genes/<ID>/) of genes that are contained in the database due to their association to
genetic variants that are involved in at least one oligogenic combination in OLIDA.
GET /api/genecombinations/1162/genes/?format=api
{ "data": [ { "type": "Gene", "id": "NODAL", "attributes": { "go_molecular_function": [ "['type I activin receptor binding', 'growth factor activity', 'protein binding', 'morphogen activity', 'cytokine activity']" ], "pathway_id": [ "kegg_path:hsa04060", "kegg_path:hsa04350", "kegg_path:hsa04550", "R-HSA-1181150", "R-HSA-1266738", "R-HSA-1433617" ], "essential_gene": "Essential", "status": "CU", "uniprot_acc": "Q96S42", "ensembl_id": "None", "entrez_id": "ENSG00000156574", "chromosome_number": "10", "lastmodified": "2021-10-18T11:00:44.646187" }, "relationships": { "variant_set": { "meta": { "count": 2 }, "data": [ { "type": "SmallVariant", "id": "305" }, { "type": "SmallVariant", "id": "3455" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/NODAL/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/NODAL/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 2 }, "data": [ { "type": "GeneCombination", "id": "111" }, { "type": "GeneCombination", "id": "1162" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/NODAL/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/NODAL/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/NODAL/?format=api" } }, { "type": "Gene", "id": "TBX20", "attributes": { "go_molecular_function": [ "['RNA polymerase II cis-regulatory region sequence-specific DNA binding', 'sequence-specific double-stranded DNA binding', 'RNA polymerase II-specific DNA-binding transcription factor binding', 'RNA polymerase II transcription regulatory region sequence-specific DNA binding', 'DNA-binding transcription activator activity, RNA polymerase II-specific', 'DNA-binding transcription factor activity, RNA polymerase II-specific']" ], "pathway_id": [], "essential_gene": "Essential", "status": "CU", "uniprot_acc": "Q9UMR3", "ensembl_id": "None", "entrez_id": "ENSG00000164532", "chromosome_number": "7", "lastmodified": "2024-02-29T15:02:20.311139" }, "relationships": { "variant_set": { "meta": { "count": 1 }, "data": [ { "type": "SmallVariant", "id": "3456" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/TBX20/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/TBX20/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 1 }, "data": [ { "type": "GeneCombination", "id": "1162" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/TBX20/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/TBX20/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/TBX20/?format=api" } } ], "meta": { "database_name": "OLIgogenic diseases DAtabase (OLIDA)", "resource_url": "olida.ibsquare.be", "api_release_year": "2021", "api_developer": [ [ "Arnau Dillen", "arnau.dillen@ulb.ac.be" ], [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_version": "0.3", "api_maintainers": [ [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_documentation": [ "olida.ibsquare.be/api/swagger", "olida.ibsquare.be/api/redoc" ], "copyright": "Copyright (c) 2025 · OLIDA All Rights Reserved.", "license": "CC Attribution-NonCommercial 4.0 International License", "ontologies": { "ORDO": "http://bioportal.bioontology.org/ontologies/ORDO", "GENO": "http://purl.obolibrary.org/obo/geno.owl", "MI": "http://purl.obolibrary.org/obo/mi.owl", "NCIT": "http://purl.obolibrary.org/obo/ncit.owl", "OGI": "http://purl.obolibrary.org/obo/ogi.owl", "OGG": "http://purl.obolibrary.org/obo/ogg.owl" }, "relevant_publications_doi": [ "10.1093/nar/gkv1068", "10.1093/database/baac023" ], "size": 2 } }