Gene List
This API endpoint handles listing (/genes) and retrieval (/genes/<ID>/) of genes that are contained in the database due to their association to
genetic variants that are involved in at least one oligogenic combination in OLIDA.
GET /api/genecombinations/1110/genes/?format=api
{ "data": [ { "type": "Gene", "id": "CACNA1F", "attributes": { "go_molecular_function": [ "['voltage-gated calcium channel activity', 'high voltage-gated calcium channel activity', 'metal ion binding']" ], "pathway_id": [ "kegg_path:hsa04010", "kegg_path:hsa04020", "kegg_path:hsa04022", "kegg_path:hsa04024", "kegg_path:hsa04260", "kegg_path:hsa04261", "kegg_path:hsa04270", "kegg_path:hsa04723", "kegg_path:hsa04725", "kegg_path:hsa04726", "kegg_path:hsa04727", "kegg_path:hsa04911", "kegg_path:hsa04912", "kegg_path:hsa04921", "kegg_path:hsa04924", "kegg_path:hsa04925", "kegg_path:hsa04927", "kegg_path:hsa04929", "kegg_path:hsa04934", "kegg_path:hsa04935", "kegg_path:hsa05010", "kegg_path:hsa05020", "kegg_path:hsa05022", "kegg_path:hsa05410", "kegg_path:hsa05412", "kegg_path:hsa05414", "kegg_path:hsa04010", "kegg_path:hsa04020", "kegg_path:hsa04022", "kegg_path:hsa04024", "kegg_path:hsa04260", "kegg_path:hsa04261", "kegg_path:hsa04270", "kegg_path:hsa04723", "kegg_path:hsa04725", "kegg_path:hsa04726", "kegg_path:hsa04727", "kegg_path:hsa04911", "kegg_path:hsa04912", "kegg_path:hsa04921", "kegg_path:hsa04924", "kegg_path:hsa04925", "kegg_path:hsa04927", "kegg_path:hsa04929", "kegg_path:hsa04934", "kegg_path:hsa04935", "kegg_path:hsa05010", "kegg_path:hsa05020", "kegg_path:hsa05022", "kegg_path:hsa05410", "kegg_path:hsa05412", "kegg_path:hsa05414" ], "essential_gene": "Non-essential", "status": "CU", "uniprot_acc": "O60840", "ensembl_id": "None", "entrez_id": "ENSG00000102001", "chromosome_number": "X", "lastmodified": "2023-05-16T12:02:33.687978" }, "relationships": { "variant_set": { "meta": { "count": 1 }, "data": [ { "type": "SmallVariant", "id": "3302" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/CACNA1F/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/CACNA1F/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 1 }, "data": [ { "type": "GeneCombination", "id": "1110" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/CACNA1F/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/CACNA1F/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/CACNA1F/?format=api" } }, { "type": "Gene", "id": "MPDZ", "attributes": { "go_molecular_function": [ "['protein C-terminus binding', 'protein binding']" ], "pathway_id": [ "kegg_path:hsa04530" ], "essential_gene": null, "status": "CU", "uniprot_acc": "O75970", "ensembl_id": "None", "entrez_id": "ENSG00000107186", "chromosome_number": "9", "lastmodified": "2022-08-04T14:14:58.260603" }, "relationships": { "variant_set": { "meta": { "count": 2 }, "data": [ { "type": "SmallVariant", "id": "2391" }, { "type": "SmallVariant", "id": "3300" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/MPDZ/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/MPDZ/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 6 }, "data": [ { "type": "GeneCombination", "id": "810" }, { "type": "GeneCombination", "id": "811" }, { "type": "GeneCombination", "id": "812" }, { "type": "GeneCombination", "id": "813" }, { "type": "GeneCombination", "id": "814" }, { "type": "GeneCombination", "id": "1110" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/MPDZ/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/MPDZ/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/MPDZ/?format=api" } }, { "type": "Gene", "id": "SRA1", "attributes": { "go_molecular_function": [ "['steroid receptor RNA activator RNA binding', 'nuclear receptor coactivator activity', 'transcription coactivator activity', 'DNA binding', 'protein binding']" ], "pathway_id": [], "essential_gene": null, "status": "CU", "uniprot_acc": "Q9HD15", "ensembl_id": "None", "entrez_id": "ENSG00000213523", "chromosome_number": "5", "lastmodified": "2021-10-18T11:00:44.268998" }, "relationships": { "variant_set": { "meta": { "count": 7 }, "data": [ { "type": "SmallVariant", "id": "35" }, { "type": "SmallVariant", "id": "1211" }, { "type": "SmallVariant", "id": "1424" }, { "type": "SmallVariant", "id": "2777" }, { "type": "SmallVariant", "id": "3299" }, { "type": "SmallVariant", "id": "3301" }, { "type": "SmallVariant", "id": "3305" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/SRA1/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/SRA1/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 8 }, "data": [ { "type": "GeneCombination", "id": "14" }, { "type": "GeneCombination", "id": "386" }, { "type": "GeneCombination", "id": "448" }, { "type": "GeneCombination", "id": "928" }, { "type": "GeneCombination", "id": "1109" }, { "type": "GeneCombination", "id": "1110" }, { "type": "GeneCombination", "id": "1112" }, { "type": "GeneCombination", "id": "1124" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/SRA1/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/SRA1/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/SRA1/?format=api" } } ], "meta": { "database_name": "OLIgogenic diseases DAtabase (OLIDA)", "resource_url": "olida.ibsquare.be", "api_release_year": "2021", "api_developer": [ [ "Arnau Dillen", "arnau.dillen@ulb.ac.be" ], [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_version": "0.3", "api_maintainers": [ [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_documentation": [ "olida.ibsquare.be/api/swagger", "olida.ibsquare.be/api/redoc" ], "copyright": "Copyright (c) 2025 · OLIDA All Rights Reserved.", "license": "CC Attribution-NonCommercial 4.0 International License", "ontologies": { "ORDO": "http://bioportal.bioontology.org/ontologies/ORDO", "GENO": "http://purl.obolibrary.org/obo/geno.owl", "MI": "http://purl.obolibrary.org/obo/mi.owl", "NCIT": "http://purl.obolibrary.org/obo/ncit.owl", "OGI": "http://purl.obolibrary.org/obo/ogi.owl", "OGG": "http://purl.obolibrary.org/obo/ogg.owl" }, "relevant_publications_doi": [ "10.1093/nar/gkv1068", "10.1093/database/baac023" ], "size": 3 } }