Gene List
This API endpoint handles listing (/genes) and retrieval (/genes/<ID>/) of genes that are contained in the database due to their association to
genetic variants that are involved in at least one oligogenic combination in OLIDA.
GET /api/genecombinations/1104/genes/?format=api
{ "data": [ { "type": "Gene", "id": "AMH", "attributes": { "go_molecular_function": [ "['growth factor activity', 'hormone activity', 'protein binding', 'type II transforming growth factor beta receptor binding', 'signaling receptor binding']" ], "pathway_id": [ "kegg_path:hsa04024", "kegg_path:hsa04060", "kegg_path:hsa04350", "kegg_path:hsa04390", "R-HSA-1266738", "R-HSA-162582", "R-HSA-201451", "R-HSA-9006936", "R-HSA-9690406" ], "essential_gene": "Non-essential", "status": "CU", "uniprot_acc": "P03971", "ensembl_id": "None", "entrez_id": "ENSG00000104899", "chromosome_number": "19", "lastmodified": "2021-10-18T11:00:44.744857" }, "relationships": { "variant_set": { "meta": { "count": 11 }, "data": [ { "type": "SmallVariant", "id": "1444" }, { "type": "SmallVariant", "id": "2445" }, { "type": "SmallVariant", "id": "2447" }, { "type": "SmallVariant", "id": "2449" }, { "type": "SmallVariant", "id": "2919" }, { "type": "SmallVariant", "id": "2940" }, { "type": "SmallVariant", "id": "2965" }, { "type": "SmallVariant", "id": "2996" }, { "type": "SmallVariant", "id": "3280" }, { "type": "SmallVariant", "id": "3309" }, { "type": "SmallVariant", "id": "3332" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/AMH/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/AMH/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 11 }, "data": [ { "type": "GeneCombination", "id": "460" }, { "type": "GeneCombination", "id": "824" }, { "type": "GeneCombination", "id": "825" }, { "type": "GeneCombination", "id": "826" }, { "type": "GeneCombination", "id": "968" }, { "type": "GeneCombination", "id": "978" }, { "type": "GeneCombination", "id": "987" }, { "type": "GeneCombination", "id": "1000" }, { "type": "GeneCombination", "id": "1104" }, { "type": "GeneCombination", "id": "1113" }, { "type": "GeneCombination", "id": "1124" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/AMH/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/AMH/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/AMH/?format=api" } }, { "type": "Gene", "id": "SLC29A3", "attributes": { "go_molecular_function": [ "['nucleoside transmembrane transporter activity', 'protein binding']" ], "pathway_id": [ "kegg_path:hsa05034", "R-HSA-1643685", "R-HSA-382551", "R-HSA-425397", "R-HSA-425407", "R-HSA-5619063", "R-HSA-5619102", "R-HSA-5619115", "R-HSA-83936" ], "essential_gene": null, "status": "CU", "uniprot_acc": "Q9BZD2", "ensembl_id": "None", "entrez_id": "ENSG00000198246", "chromosome_number": "10", "lastmodified": "2023-05-16T12:02:33.525136" }, "relationships": { "variant_set": { "meta": { "count": 5 }, "data": [ { "type": "SmallVariant", "id": "3169" }, { "type": "SmallVariant", "id": "3179" }, { "type": "SmallVariant", "id": "3281" }, { "type": "SmallVariant", "id": "3290" }, { "type": "SmallVariant", "id": "3326" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/SLC29A3/relationships/variant_set?format=api", "related": "https://olida.ibsquare.be/api/genes/SLC29A3/variants/?format=api" } }, "genecombination_set": { "meta": { "count": 6 }, "data": [ { "type": "GeneCombination", "id": "1058" }, { "type": "GeneCombination", "id": "1061" }, { "type": "GeneCombination", "id": "1104" }, { "type": "GeneCombination", "id": "1107" }, { "type": "GeneCombination", "id": "1117" }, { "type": "GeneCombination", "id": "1121" } ], "links": { "self": "https://olida.ibsquare.be/api/genes/SLC29A3/relationships/genecombination_set?format=api", "related": "https://olida.ibsquare.be/api/genes/SLC29A3/genecombinations/?format=api" } } }, "links": { "self": "https://olida.ibsquare.be/api/genes/SLC29A3/?format=api" } } ], "meta": { "database_name": "OLIgogenic diseases DAtabase (OLIDA)", "resource_url": "olida.ibsquare.be", "api_release_year": "2021", "api_developer": [ [ "Arnau Dillen", "arnau.dillen@ulb.ac.be" ], [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_version": "0.3", "api_maintainers": [ [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_documentation": [ "olida.ibsquare.be/api/swagger", "olida.ibsquare.be/api/redoc" ], "copyright": "Copyright (c) 2024 · OLIDA All Rights Reserved.", "license": "CC Attribution-NonCommercial 4.0 International License", "ontologies": { "ORDO": "http://bioportal.bioontology.org/ontologies/ORDO", "GENO": "http://purl.obolibrary.org/obo/geno.owl", "MI": "http://purl.obolibrary.org/obo/mi.owl", "NCIT": "http://purl.obolibrary.org/obo/ncit.owl", "OGI": "http://purl.obolibrary.org/obo/ogi.owl", "OGG": "http://purl.obolibrary.org/obo/ogg.owl" }, "relevant_publications_doi": [ "10.1093/nar/gkv1068", "10.1093/database/baac023" ], "size": 2 } }