Variant List
This API endpoint handles listing (/variants) and retrieval (/variants/<ID>/) of genetic variants from the database
GET /api/combinations/OLI412/variants/?format=api
{ "data": [ { "type": "SmallVariant", "id": "884", "attributes": { "frequencies": { "KGP_genomes_maf": 0.1264, "KGP_genomes_AFR_maf": 0.0204, "KGP_genomes_AMR_maf": 0.0115, "KGP_genomes_EAS_maf": 0.2887, "KGP_genomes_EUR_maf": 0.0089, "KGP_genomes_SAS_maf": 0.3047, "gnomad_maf": 0.0711, "gnomad_AFR_maf": 0.01462, "gnomad_AMR_maf": 0.01307, "gnomad_ASJ_maf": 0.05566, "gnomad_EAS_maf": 0.2912, "gnomad_FIN_maf": 0.001864, "gnomad_NFE_maf": 0.01388, "gnomad_OTH_maf": 0.04475, "gnomad_SAS_maf": 0.2842, "ESP_AA_maf": 0.0104, "ESP_EA_maf": 0.01161 }, "predictions": { "sift_prediction": "Deleterious", "pp2_hvar_prediction": "Possibly Damaging", "cadd_prediction": 1.870492, "mutationtaster_prediction": "Disease causing" }, "status": "CU", "genomic_position_hg19": 3304626, "genomic_position_hg38": 3254626, "chromosome": "16", "annotation_flag": "automatically_attributed", "lastmodified": "2024-01-12T14:28:54.649487", "ref_allele": "C", "alt_allele": "G", "cdna_change": "c.442G>A", "protein_change": "p.Glu148Gln", "transcript_id": "NM_000243.3", "dbsnp_id": "rs3743930", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI412" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/884/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/884/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/884/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/884/gene/?format=api" }, "data": { "type": "Gene", "id": "MEFV" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/884/?format=api" } }, { "type": "SmallVariant", "id": "885", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": 4.383e-05, "gnomad_AFR_maf": 6.168e-05, "gnomad_AMR_maf": 5.794e-05, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 4.406e-05, "gnomad_OTH_maf": 0.0001632, "gnomad_SAS_maf": 6.539e-05, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Deleterious", "pp2_hvar_prediction": "Benign", "cadd_prediction": 1.408532, "mutationtaster_prediction": "Disease causing" }, "status": "CU", "genomic_position_hg19": 247587277, "genomic_position_hg38": 247423975, "chromosome": "1", "annotation_flag": "automatically_attributed", "lastmodified": "2023-06-06T16:57:45.802053", "ref_allele": "C", "alt_allele": "T", "cdna_change": "c.526C>T", "protein_change": "p.Arg176Trp", "transcript_id": "NM_001243133.1", "dbsnp_id": "rs201867990", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI412" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/885/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/885/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/885/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/885/gene/?format=api" }, "data": { "type": "Gene", "id": "NLRP3" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/885/?format=api" } } ], "meta": { "database_name": "OLIgogenic diseases DAtabase (OLIDA)", "resource_url": "olida.ibsquare.be", "api_release_year": "2021", "api_developer": [ [ "Arnau Dillen", "arnau.dillen@ulb.ac.be" ], [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_version": "0.3", "api_maintainers": [ [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_documentation": [ "olida.ibsquare.be/api/swagger", "olida.ibsquare.be/api/redoc" ], "copyright": "Copyright (c) 2025 · OLIDA All Rights Reserved.", "license": "CC Attribution-NonCommercial 4.0 International License", "ontologies": { "ORDO": "http://bioportal.bioontology.org/ontologies/ORDO", "GENO": "http://purl.obolibrary.org/obo/geno.owl", "MI": "http://purl.obolibrary.org/obo/mi.owl", "NCIT": "http://purl.obolibrary.org/obo/ncit.owl", "OGI": "http://purl.obolibrary.org/obo/ogi.owl", "OGG": "http://purl.obolibrary.org/obo/ogg.owl" }, "relevant_publications_doi": [ "10.1093/nar/gkv1068", "10.1093/database/baac023" ], "Variant serializers": [ "SmallVariantSerializer", "CopyNumberVariantSerializer" ], "size": 2 } }