Variant List
This API endpoint handles listing (/variants) and retrieval (/variants/<ID>/) of genetic variants from the database
GET /api/combinations/OLI352/variants/?format=api
{ "data": [ { "type": "SmallVariant", "id": "753", "attributes": { "frequencies": { "KGP_genomes_maf": 0.003, "KGP_genomes_AFR_maf": 0.0, "KGP_genomes_AMR_maf": 0.0, "KGP_genomes_EAS_maf": 0.0149, "KGP_genomes_EUR_maf": 0.0, "KGP_genomes_SAS_maf": 0.0, "gnomad_maf": 0.001534, "gnomad_AFR_maf": 0.0, "gnomad_AMR_maf": 0.0, "gnomad_ASJ_maf": 0.002389, "gnomad_EAS_maf": 0.01758, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 5.32e-05, "gnomad_OTH_maf": 0.001158, "gnomad_SAS_maf": 0.0009478, "ESP_AA_maf": 0.0, "ESP_EA_maf": 0.0001184 }, "predictions": { "sift_prediction": null, "pp2_hvar_prediction": null, "cadd_prediction": -0.194216, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 73570333, "genomic_position_hg38": 71810576, "chromosome": "10", "annotation_flag": "manually_attributed", "lastmodified": "2023-06-06T16:57:45.001634", "ref_allele": "C", "alt_allele": "T", "cdna_change": "c.9077+7C>T", "protein_change": null, "transcript_id": "NM_022124.6", "dbsnp_id": "rs76114420", "variant_effect": "splicing" }, "relationships": { "in_combination": { "meta": { "count": 2 }, "data": [ { "type": "Combination", "id": "OLI351" }, { "type": "Combination", "id": "OLI352" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/753/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/753/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/753/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/753/gene/?format=api" }, "data": { "type": "Gene", "id": "CDH23" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/753/?format=api" } }, { "type": "SmallVariant", "id": "757", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": 2.003e-05, "gnomad_AFR_maf": 0.0, "gnomad_AMR_maf": 0.0, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 0.0002554, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 0.0, "gnomad_OTH_maf": 0.0, "gnomad_SAS_maf": 0.0, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Tolerated", "pp2_hvar_prediction": "Benign", "cadd_prediction": -0.148981, "mutationtaster_prediction": null }, "status": "CU", "genomic_position_hg19": 149681126, "genomic_position_hg38": 150512856, "chromosome": "X", "annotation_flag": "manually_corrected", "lastmodified": "2023-06-06T16:57:45.027189", "ref_allele": "G", "alt_allele": "T", "cdna_change": "c.2780G>T", "protein_change": "p.Arg927Leu", "transcript_id": "NM_001177465.3", "dbsnp_id": "NA", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI352" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/757/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/757/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/757/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/757/gene/?format=api" }, "data": { "type": "Gene", "id": "MAMLD1" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/757/?format=api" } }, { "type": "SmallVariant", "id": "758", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": 4.012e-06, "gnomad_AFR_maf": 0.0, "gnomad_AMR_maf": 0.0, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 5.564e-05, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 0.0, "gnomad_OTH_maf": 0.0, "gnomad_SAS_maf": 0.0, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": null, "pp2_hvar_prediction": null, "cadd_prediction": 0.153802, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 73498239, "genomic_position_hg38": 71738482, "chromosome": "10", "annotation_flag": "automatically_attributed_and_verified", "lastmodified": "2023-06-06T16:57:45.033463", "ref_allele": "C", "alt_allele": "A", "cdna_change": "c.4210-16C>A", "protein_change": null, "transcript_id": "NM_022124.5", "dbsnp_id": "rs775928557", "variant_effect": "unknown" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI352" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/758/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/758/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/758/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/758/gene/?format=api" }, "data": { "type": "Gene", "id": "CDH23" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/758/?format=api" } }, { "type": "SmallVariant", "id": "759", "attributes": { "frequencies": { "KGP_genomes_maf": 0.0028, "KGP_genomes_AFR_maf": 0.0, "KGP_genomes_AMR_maf": 0.0, "KGP_genomes_EAS_maf": 0.0139, "KGP_genomes_EUR_maf": 0.0, "KGP_genomes_SAS_maf": 0.0, "gnomad_maf": 0.001197, "gnomad_AFR_maf": 0.0, "gnomad_AMR_maf": 0.0, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 0.01633, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 0.0, "gnomad_OTH_maf": 0.0003352, "gnomad_SAS_maf": 3.353e-05, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": null, "pp2_hvar_prediction": null, "cadd_prediction": 0.597737, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 76866991, "genomic_position_hg38": 77155945, "chromosome": "11", "annotation_flag": "automatically_attributed_and_verified", "lastmodified": "2023-06-06T16:57:45.039960", "ref_allele": "C", "alt_allele": "T", "cdna_change": "c.324C>T", "protein_change": "p.Tyr108=", "transcript_id": "NM_NM_001127180.2", "dbsnp_id": "rs116892396", "variant_effect": "silent" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI352" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/759/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/759/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/759/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/759/gene/?format=api" }, "data": { "type": "Gene", "id": "MYO7A" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/759/?format=api" } }, { "type": "SmallVariant", "id": "760", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": 8.55e-05, "gnomad_AFR_maf": 0.0, "gnomad_AMR_maf": 0.0, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 0.001101, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 1.736e-05, "gnomad_OTH_maf": 0.0, "gnomad_SAS_maf": 0.0, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Tolerated", "pp2_hvar_prediction": "Damaging", "cadd_prediction": 3.47559, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 96074675, "genomic_position_hg38": 96341511, "chromosome": "11", "annotation_flag": "automatically_attributed", "lastmodified": "2023-06-06T16:57:45.046288", "ref_allele": "C", "alt_allele": "T", "cdna_change": "c.385G>A", "protein_change": "p.Asp129Asn", "transcript_id": "NM_032427.3", "dbsnp_id": "rs892433964", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI352" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/760/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/760/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/760/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/760/gene/?format=api" }, "data": { "type": "Gene", "id": "MAML2" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/760/?format=api" } }, { "type": "SmallVariant", "id": "761", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": null, "gnomad_AFR_maf": null, "gnomad_AMR_maf": null, "gnomad_ASJ_maf": null, "gnomad_EAS_maf": null, "gnomad_FIN_maf": null, "gnomad_NFE_maf": null, "gnomad_OTH_maf": null, "gnomad_SAS_maf": null, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": null, "pp2_hvar_prediction": null, "cadd_prediction": 0.221105, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 112926790, "genomic_position_hg38": 112488986, "chromosome": "12", "annotation_flag": "manually_corrected", "lastmodified": "2023-06-06T16:57:45.052558", "ref_allele": "G", "alt_allele": "T", "cdna_change": "c.1448-38G>T", "protein_change": null, "transcript_id": "NM_002834.5", "dbsnp_id": "NA", "variant_effect": "unknown" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI352" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/761/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/761/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/761/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/761/gene/?format=api" }, "data": { "type": "Gene", "id": "PTPN11" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/761/?format=api" } }, { "type": "SmallVariant", "id": "762", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": 3.978e-06, "gnomad_AFR_maf": 0.0, "gnomad_AMR_maf": 0.0, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 5.437e-05, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 0.0, "gnomad_OTH_maf": 0.0, "gnomad_SAS_maf": 0.0, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": null, "pp2_hvar_prediction": null, "cadd_prediction": 0.081926, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 120458562, "genomic_position_hg38": 119915939, "chromosome": "1", "annotation_flag": "automatically_attributed_and_verified", "lastmodified": "2023-06-06T16:57:45.058917", "ref_allele": "C", "alt_allele": "T", "cdna_change": "c.6783G>A", "protein_change": "p.Glu2261=", "transcript_id": "NM_024408.3", "dbsnp_id": "rs759118563", "variant_effect": "silent" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI352" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/762/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/762/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/762/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/762/gene/?format=api" }, "data": { "type": "Gene", "id": "NOTCH2" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/762/?format=api" } }, { "type": "SmallVariant", "id": "763", "attributes": { "frequencies": { "KGP_genomes_maf": 0.0034, "KGP_genomes_AFR_maf": 0.0, "KGP_genomes_AMR_maf": 0.0, "KGP_genomes_EAS_maf": 0.0159, "KGP_genomes_EUR_maf": 0.0, "KGP_genomes_SAS_maf": 0.001, "gnomad_maf": 0.00121, "gnomad_AFR_maf": 6.152e-05, "gnomad_AMR_maf": 2.892e-05, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 0.01539, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 4.4e-05, "gnomad_OTH_maf": 0.0003263, "gnomad_SAS_maf": 0.0003921, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Tolerated", "pp2_hvar_prediction": "Benign", "cadd_prediction": 1.7102, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 46512289, "genomic_position_hg38": 46046617, "chromosome": "1", "annotation_flag": "automatically_attributed", "lastmodified": "2023-06-06T16:57:45.065288", "ref_allele": "T", "alt_allele": "C", "cdna_change": "c.950A>G", "protein_change": "p.Asn317Ser", "transcript_id": "NM_001114172.1", "dbsnp_id": "rs114180250", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI352" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/763/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/763/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/763/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/763/gene/?format=api" }, "data": { "type": "Gene", "id": "PIK3R3" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/763/?format=api" } }, { "type": "SmallVariant", "id": "764", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": 0.0, "gnomad_AFR_maf": 0.0, "gnomad_AMR_maf": 0.0, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 0.0, "gnomad_OTH_maf": 0.0, "gnomad_SAS_maf": 0.0, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": null, "pp2_hvar_prediction": null, "cadd_prediction": 0.532124, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 5755492, "genomic_position_hg38": 5753765, "chromosome": "4", "annotation_flag": "manually_corrected", "lastmodified": "2023-06-06T16:57:45.071748", "ref_allele": "G", "alt_allele": "T", "cdna_change": "c.1316-20G>T", "protein_change": null, "transcript_id": "NM_001306090.2", "dbsnp_id": "rs773461223", "variant_effect": "unknown" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI352" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/764/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/764/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/764/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/764/gene/?format=api" }, "data": { "type": "Gene", "id": "EVC" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/764/?format=api" } }, { "type": "SmallVariant", "id": "765", "attributes": { "frequencies": { "KGP_genomes_maf": 0.001, "KGP_genomes_AFR_maf": 0.0, "KGP_genomes_AMR_maf": 0.0, "KGP_genomes_EAS_maf": 0.005, "KGP_genomes_EUR_maf": 0.0, "KGP_genomes_SAS_maf": 0.0, "gnomad_maf": 0.0003071, "gnomad_AFR_maf": 0.0, "gnomad_AMR_maf": 2.892e-05, "gnomad_ASJ_maf": 9.938e-05, "gnomad_EAS_maf": 0.002392, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 5.307e-05, "gnomad_OTH_maf": 0.0003259, "gnomad_SAS_maf": 0.0007513, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": null, "pp2_hvar_prediction": null, "cadd_prediction": -0.229797, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 5785273, "genomic_position_hg38": 5783546, "chromosome": "4", "annotation_flag": "manually_corrected", "lastmodified": "2023-06-06T16:57:45.078196", "ref_allele": "C", "alt_allele": "T", "cdna_change": "c.1564-6C>T", "protein_change": null, "transcript_id": "NM_001306090.2", "dbsnp_id": "rs188245524", "variant_effect": "splicing" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI352" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/765/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/765/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/765/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/765/gene/?format=api" }, "data": { "type": "Gene", "id": "EVC" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/765/?format=api" } }, { "type": "SmallVariant", "id": "766", 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