Variant List
This API endpoint handles listing (/variants) and retrieval (/variants/<ID>/) of genetic variants from the database
GET /api/genes/WDR11/variants/?format=api
{ "data": [ { "type": "SmallVariant", "id": "27", "attributes": { "frequencies": { "KGP_genomes_maf": 0.0012, "KGP_genomes_AFR_maf": 0.0045, "KGP_genomes_AMR_maf": 0.0, "KGP_genomes_EAS_maf": 0.0, "KGP_genomes_EUR_maf": 0.0, "KGP_genomes_SAS_maf": 0.0, "gnomad_maf": 0.00103, "gnomad_AFR_maf": 0.002338, "gnomad_AMR_maf": 0.0001157, "gnomad_ASJ_maf": 0.01845, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 0.0001934, "gnomad_OTH_maf": 0.001304, "gnomad_SAS_maf": 3.266e-05, "ESP_AA_maf": 0.001816, "ESP_EA_maf": 0.001047 }, "predictions": { "sift_prediction": "Tolerated", "pp2_hvar_prediction": "Benign", "cadd_prediction": 1.080061, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 122630693, "genomic_position_hg38": 120871181, "chromosome": "10", "annotation_flag": "automatically_attributed", "lastmodified": "2023-06-06T16:57:40.673956", "ref_allele": "A", "alt_allele": "G", "cdna_change": "c.1306A>G", "protein_change": "p.Ile436Val", "transcript_id": "NM_018117.11", "dbsnp_id": "rs34602786", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI014" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/27/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/27/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/27/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/27/gene/?format=api" }, "data": { "type": "Gene", "id": "WDR11" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/27/?format=api" } }, { "type": "SmallVariant", "id": "782", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": null, "gnomad_AFR_maf": null, "gnomad_AMR_maf": null, "gnomad_ASJ_maf": null, "gnomad_EAS_maf": null, "gnomad_FIN_maf": null, "gnomad_NFE_maf": null, "gnomad_OTH_maf": null, "gnomad_SAS_maf": null, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Tolerated", "pp2_hvar_prediction": "Benign", "cadd_prediction": 2.642185, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 122626092, "genomic_position_hg38": 120866580, "chromosome": "10", "annotation_flag": "automatically_attributed", "lastmodified": "2023-06-06T16:57:45.181422", "ref_allele": "G", "alt_allele": "T", "cdna_change": null, "protein_change": "p.Val336Phe", "transcript_id": null, "dbsnp_id": "rs1474540530", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI357" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/782/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/782/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/782/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/782/gene/?format=api" }, "data": { "type": "Gene", "id": "WDR11" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/782/?format=api" } }, { "type": "SmallVariant", "id": "1309", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": 0.0001471, "gnomad_AFR_maf": 0.0, "gnomad_AMR_maf": 0.0001735, "gnomad_ASJ_maf": 0.001389, "gnomad_EAS_maf": 5.437e-05, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 0.0001318, "gnomad_OTH_maf": 0.0001629, "gnomad_SAS_maf": 0.0, "ESP_AA_maf": 0.0, "ESP_EA_maf": 0.0004651 }, "predictions": { "sift_prediction": "Deleterious", "pp2_hvar_prediction": "Damaging", "cadd_prediction": 4.074427, "mutationtaster_prediction": "Disease causing" }, "status": "CU", "genomic_position_hg19": 122668121, "genomic_position_hg38": 120908609, "chromosome": "10", "annotation_flag": "automatically_attributed", "lastmodified": "2023-06-06T16:57:48.370384", "ref_allele": "G", "alt_allele": "A", "cdna_change": "c.3571G>A", "protein_change": "p.Gly1191Ser", "transcript_id": "NM_018117.11", "dbsnp_id": "rs149486212", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI602" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/1309/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/1309/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/1309/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/1309/gene/?format=api" }, "data": { "type": "Gene", "id": "WDR11" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/1309/?format=api" } }, { "type": "SmallVariant", "id": "1315", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": 3.981e-05, "gnomad_AFR_maf": 0.0, "gnomad_AMR_maf": 2.896e-05, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 7.043e-05, "gnomad_OTH_maf": 0.0, "gnomad_SAS_maf": 3.269e-05, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Deleterious", "pp2_hvar_prediction": "Damaging", "cadd_prediction": 3.832283, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 122637900, "genomic_position_hg38": 120878388, "chromosome": "10", "annotation_flag": "automatically_attributed", "lastmodified": "2023-06-06T16:57:48.408059", "ref_allele": "C", "alt_allele": "G", "cdna_change": "c.1592C>G", "protein_change": "p.Ser531Cys", "transcript_id": "NM_018117.11", "dbsnp_id": "rs775506715", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI603" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/1315/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/1315/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/1315/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/1315/gene/?format=api" }, "data": { "type": "Gene", "id": "WDR11" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/1315/?format=api" } }, { "type": "SmallVariant", "id": "1869", "attributes": { "frequencies": { "KGP_genomes_maf": 0.0002, "KGP_genomes_AFR_maf": 0.0, "KGP_genomes_AMR_maf": 0.0, "KGP_genomes_EAS_maf": 0.001, "KGP_genomes_EUR_maf": 0.0, "KGP_genomes_SAS_maf": 0.0, "gnomad_maf": 1.591e-05, "gnomad_AFR_maf": 0.0, "gnomad_AMR_maf": 0.0, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 0.0001631, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 0.0, "gnomad_OTH_maf": 0.0, "gnomad_SAS_maf": 3.267e-05, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Deleterious", "pp2_hvar_prediction": "Damaging", "cadd_prediction": 3.869334, "mutationtaster_prediction": "Disease causing" }, "status": "CU", "genomic_position_hg19": 122612104, "genomic_position_hg38": 120852592, "chromosome": "10", "annotation_flag": "automatically_attributed", "lastmodified": "2023-06-06T16:57:51.800971", "ref_allele": "A", "alt_allele": "G", "cdna_change": "c.155A>G", "protein_change": "p.Gln52Arg", "transcript_id": "NM_018117.11", "dbsnp_id": "rs202191723", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI854" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/1869/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/1869/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/1869/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/1869/gene/?format=api" }, "data": { "type": "Gene", "id": "WDR11" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/1869/?format=api" } }, { "type": "SmallVariant", "id": "1870", "attributes": { "frequencies": { "KGP_genomes_maf": 0.0002, "KGP_genomes_AFR_maf": 0.0, "KGP_genomes_AMR_maf": 0.0, "KGP_genomes_EAS_maf": 0.001, "KGP_genomes_EUR_maf": 0.0, "KGP_genomes_SAS_maf": 0.0, "gnomad_maf": 0.0002028, "gnomad_AFR_maf": 0.0, "gnomad_AMR_maf": 0.0, "gnomad_ASJ_maf": 9.921e-05, "gnomad_EAS_maf": 0.00261, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 8.792e-06, "gnomad_OTH_maf": 0.0, "gnomad_SAS_maf": 3.266e-05, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Deleterious", "pp2_hvar_prediction": "Damaging", "cadd_prediction": 4.434298, "mutationtaster_prediction": "Disease causing" }, "status": "CU", "genomic_position_hg19": 122664879, "genomic_position_hg38": 120905367, "chromosome": "10", "annotation_flag": "automatically_attributed", "lastmodified": "2023-06-06T16:57:51.807421", "ref_allele": "G", "alt_allele": "A", "cdna_change": "c.3242G>A", "protein_change": "p.Arg1081His", "transcript_id": "NM_018117.11", "dbsnp_id": "rs201686484", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI854" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/1870/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/1870/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/1870/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/1870/gene/?format=api" }, "data": { "type": "Gene", "id": "WDR11" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/1870/?format=api" } }, { "type": "SmallVariant", "id": "2407", "attributes": { "frequencies": { "KGP_genomes_maf": 0.0002, "KGP_genomes_AFR_maf": 0.0, "KGP_genomes_AMR_maf": 0.0, "KGP_genomes_EAS_maf": 0.001, "KGP_genomes_EUR_maf": 0.0, "KGP_genomes_SAS_maf": 0.0, "gnomad_maf": 1.193e-05, "gnomad_AFR_maf": 0.0, "gnomad_AMR_maf": 0.0, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 0.0001631, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 0.0, "gnomad_OTH_maf": 0.0, "gnomad_SAS_maf": 0.0, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Deleterious", "pp2_hvar_prediction": "Damaging", "cadd_prediction": 3.821615, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 122666299, "genomic_position_hg38": 120906787, "chromosome": "10", "annotation_flag": null, "lastmodified": "2023-06-06T16:57:55.083312", "ref_allele": "T", "alt_allele": "C", "cdna_change": "c.3449T>C", "protein_change": "p.Phe1150Ser", "transcript_id": "NM_018117.12", "dbsnp_id": "rs201977924", "variant_effect": null }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI1115" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/2407/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/2407/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/2407/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/2407/gene/?format=api" }, "data": { "type": "Gene", "id": "WDR11" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/2407/?format=api" } }, { "type": "SmallVariant", "id": "2501", "attributes": { "frequencies": { "KGP_genomes_maf": 0.0008, "KGP_genomes_AFR_maf": 0.0, "KGP_genomes_AMR_maf": 0.0014, "KGP_genomes_EAS_maf": 0.0, "KGP_genomes_EUR_maf": 0.003, "KGP_genomes_SAS_maf": 0.0, "gnomad_maf": 0.000565, "gnomad_AFR_maf": 6.155e-05, "gnomad_AMR_maf": 0.0002024, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 0.001144, "gnomad_OTH_maf": 0.0004896, "gnomad_SAS_maf": 3.269e-05, "ESP_AA_maf": 0.000227, "ESP_EA_maf": 0.001977 }, "predictions": { "sift_prediction": "Deleterious", "pp2_hvar_prediction": "Benign", "cadd_prediction": 2.634203, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 122649483, "genomic_position_hg38": 120889971, "chromosome": "10", "annotation_flag": null, "lastmodified": "2023-06-06T16:57:55.624105", "ref_allele": "A", "alt_allele": "G", "cdna_change": "c.2305A>G", "protein_change": "p.Met769Val", "transcript_id": null, "dbsnp_id": "NA", "variant_effect": null }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI1164" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/2501/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/2501/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/2501/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/2501/gene/?format=api" }, "data": { "type": "Gene", "id": "WDR11" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/2501/?format=api" } }, { "type": "SmallVariant", "id": "2503", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": null, "gnomad_AFR_maf": null, "gnomad_AMR_maf": null, "gnomad_ASJ_maf": null, "gnomad_EAS_maf": null, "gnomad_FIN_maf": null, "gnomad_NFE_maf": null, "gnomad_OTH_maf": null, "gnomad_SAS_maf": null, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Deleterious", "pp2_hvar_prediction": "Possibly Damaging", "cadd_prediction": 3.628585, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 122648614, "genomic_position_hg38": 120889102, "chromosome": "10", "annotation_flag": null, "lastmodified": "2023-06-06T16:57:55.636444", "ref_allele": "A", "alt_allele": "G", "cdna_change": "c.2146A>G", "protein_change": "p.Ile716Val", "transcript_id": null, "dbsnp_id": "NA", "variant_effect": null }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI1165" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/2503/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/2503/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/2503/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/2503/gene/?format=api" }, "data": { "type": "Gene", "id": "WDR11" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/2503/?format=api" } }, { "type": "SmallVariant", "id": "2511", "attributes": { "frequencies": { "KGP_genomes_maf": 0.0004, "KGP_genomes_AFR_maf": 0.0, "KGP_genomes_AMR_maf": 0.0, "KGP_genomes_EAS_maf": 0.0, "KGP_genomes_EUR_maf": 0.002, "KGP_genomes_SAS_maf": 0.0, "gnomad_maf": 0.002752, "gnomad_AFR_maf": 0.0004307, "gnomad_AMR_maf": 0.0002602, "gnomad_ASJ_maf": 9.923e-05, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.003742, "gnomad_NFE_maf": 0.005125, "gnomad_OTH_maf": 0.001792, "gnomad_SAS_maf": 0.0, "ESP_AA_maf": 0.0006809, "ESP_EA_maf": 0.00314 }, "predictions": { "sift_prediction": null, "pp2_hvar_prediction": "Benign", "cadd_prediction": -0.422943, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", 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