Variant List
This API endpoint handles listing (/variants) and retrieval (/variants/<ID>/) of genetic variants from the database
GET /api/genes/TARDBP/variants/?format=api
{ "data": [ { "type": "SmallVariant", "id": "540", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": 1.593e-05, "gnomad_AFR_maf": 0.0, "gnomad_AMR_maf": 0.0, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 3.526e-05, "gnomad_OTH_maf": 0.0, "gnomad_SAS_maf": 0.0, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Tolerated", "pp2_hvar_prediction": "Benign", "cadd_prediction": 2.838561, "mutationtaster_prediction": "Disease causing" }, "status": "CU", "genomic_position_hg19": 11082325, "genomic_position_hg38": 11022268, "chromosome": "1", "annotation_flag": "automatically_attributed", "lastmodified": "2023-06-06T16:57:43.693917", "ref_allele": "G", "alt_allele": "A", "cdna_change": "c.859G>A", "protein_change": "p.Gly287Ser", "transcript_id": "NM_007375.3", "dbsnp_id": "rs80356719", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 2 }, "data": [ { "type": "Combination", "id": "OLI1588" }, { "type": "Combination", "id": "OLI279" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/540/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/540/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/540/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/540/gene/?format=api" }, "data": { "type": "Gene", "id": "TARDBP" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/540/?format=api" } }, { "type": "SmallVariant", "id": "871", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": 2.153e-05, "gnomad_AFR_maf": 0.0, "gnomad_AMR_maf": 0.0, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 4.696e-05, "gnomad_OTH_maf": 0.0, "gnomad_SAS_maf": 0.0, "ESP_AA_maf": 0.0, "ESP_EA_maf": 0.0001163 }, "predictions": { "sift_prediction": "Tolerated", "pp2_hvar_prediction": "Benign", "cadd_prediction": 2.734673, "mutationtaster_prediction": "Disease causing" }, "status": "CU", "genomic_position_hg19": 11082635, "genomic_position_hg38": 11022578, "chromosome": "1", "annotation_flag": "manually_corrected", "lastmodified": "2023-06-06T16:57:45.724203", "ref_allele": "A", "alt_allele": "G", "cdna_change": "c.1169A>G", "protein_change": "p.Asn390Ser", "transcript_id": "NM_007375.3", "dbsnp_id": "rs80356742", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI404" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/871/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/871/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/871/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/871/gene/?format=api" }, "data": { "type": "Gene", "id": "TARDBP" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/871/?format=api" } }, { "type": "SmallVariant", "id": "932", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": 3.982e-06, "gnomad_AFR_maf": 0.0, "gnomad_AMR_maf": 0.0, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 8.817e-06, "gnomad_OTH_maf": 0.0, "gnomad_SAS_maf": 0.0, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Tolerated", "pp2_hvar_prediction": "Benign", "cadd_prediction": 2.662089, "mutationtaster_prediction": "Disease causing" }, "status": "CU", "genomic_position_hg19": 11082409, "genomic_position_hg38": 11022352, "chromosome": "1", "annotation_flag": "automatically_attributed", "lastmodified": "2023-06-06T16:57:46.105473", "ref_allele": "G", "alt_allele": "A", "cdna_change": "c.943G>A", "protein_change": "p.Ala315Thr", "transcript_id": "NM_007375.3", "dbsnp_id": "rs80356726", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI437" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/932/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/932/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/932/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/932/gene/?format=api" }, "data": { "type": "Gene", "id": "TARDBP" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/932/?format=api" } }, { "type": "SmallVariant", "id": "1430", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": 1.194e-05, "gnomad_AFR_maf": 0.0, "gnomad_AMR_maf": 0.0, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 2.644e-05, "gnomad_OTH_maf": 0.0, "gnomad_SAS_maf": 0.0, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Tolerated", "pp2_hvar_prediction": "Benign", "cadd_prediction": 2.64195, "mutationtaster_prediction": "Disease causing" }, "status": "CU", "genomic_position_hg19": 11082347, "genomic_position_hg38": 11022290, "chromosome": "1", "annotation_flag": "automatically_attributed", "lastmodified": "2023-06-06T16:57:49.091276", "ref_allele": "G", "alt_allele": "T", "cdna_change": null, "protein_change": "p.Gly294Val", "transcript_id": null, "dbsnp_id": "rs80356721", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI659" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/1430/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/1430/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/1430/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/1430/gene/?format=api" }, "data": { "type": "Gene", "id": "TARDBP" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/1430/?format=api" } }, { "type": "SmallVariant", "id": "1695", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": null, "gnomad_AFR_maf": null, "gnomad_AMR_maf": null, "gnomad_ASJ_maf": null, "gnomad_EAS_maf": null, "gnomad_FIN_maf": null, "gnomad_NFE_maf": null, "gnomad_OTH_maf": null, "gnomad_SAS_maf": null, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Tolerated", "pp2_hvar_prediction": "Benign", "cadd_prediction": 1.851765, "mutationtaster_prediction": "Disease causing" }, "status": "CU", "genomic_position_hg19": 11082521, "genomic_position_hg38": 11022464, "chromosome": "1", "annotation_flag": "automatically_attributed", "lastmodified": "2023-06-06T16:57:50.751294", "ref_allele": "A", "alt_allele": "G", "cdna_change": null, "protein_change": "p.Asn352Ser", "transcript_id": null, "dbsnp_id": "rs80356734", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI765" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/1695/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/1695/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/1695/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/1695/gene/?format=api" }, "data": { "type": "Gene", "id": "TARDBP" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/1695/?format=api" } }, { "type": "SmallVariant", "id": "1704", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": null, "gnomad_AFR_maf": null, "gnomad_AMR_maf": null, "gnomad_ASJ_maf": null, "gnomad_EAS_maf": null, "gnomad_FIN_maf": null, "gnomad_NFE_maf": null, "gnomad_OTH_maf": null, "gnomad_SAS_maf": null, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Deleterious", "pp2_hvar_prediction": "Benign", "cadd_prediction": 2.908792, "mutationtaster_prediction": "Disease causing" }, "status": "CU", "genomic_position_hg19": 11082428, "genomic_position_hg38": 11022371, "chromosome": "1", "annotation_flag": "automatically_attributed", "lastmodified": "2023-06-06T16:57:50.807828", "ref_allele": "C", "alt_allele": "T", "cdna_change": null, "protein_change": "p.Ala321Val", "transcript_id": null, "dbsnp_id": "rs1304706298", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI770" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/1704/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/1704/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/1704/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/1704/gene/?format=api" }, "data": { "type": "Gene", "id": "TARDBP" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/1704/?format=api" } }, { "type": "SmallVariant", "id": "2750", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": null, "gnomad_AFR_maf": null, "gnomad_AMR_maf": null, "gnomad_ASJ_maf": null, "gnomad_EAS_maf": null, "gnomad_FIN_maf": null, "gnomad_NFE_maf": null, "gnomad_OTH_maf": null, "gnomad_SAS_maf": null, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Tolerated", "pp2_hvar_prediction": "Benign", "cadd_prediction": 2.379157, "mutationtaster_prediction": "Disease causing" }, "status": "CU", "genomic_position_hg19": 11082347, "genomic_position_hg38": 11022290, "chromosome": "1", "annotation_flag": null, "lastmodified": "2023-06-06T16:57:57.016988", "ref_allele": "G", "alt_allele": "C", "cdna_change": null, "protein_change": "p.Gly294Ala", "transcript_id": null, "dbsnp_id": "NA", "variant_effect": null }, "relationships": { "in_combination": { "meta": { "count": 3 }, "data": [ { "type": "Combination", "id": "OLI1309" }, { "type": "Combination", "id": "OLI1310" }, { "type": "Combination", "id": "OLI1312" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/2750/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/2750/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/2750/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/2750/gene/?format=api" }, "data": { "type": "Gene", "id": "TARDBP" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/2750/?format=api" } }, { "type": "SmallVariant", "id": "3060", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": 1.194e-05, "gnomad_AFR_maf": 0.0, "gnomad_AMR_maf": 0.0, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 2.644e-05, "gnomad_OTH_maf": 0.0, "gnomad_SAS_maf": 0.0, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Tolerated", "pp2_hvar_prediction": "Benign", "cadd_prediction": 2.64195, "mutationtaster_prediction": "Disease causing" }, "status": "CU", "genomic_position_hg19": 11082347, "genomic_position_hg38": 11022290, "chromosome": "1", "annotation_flag": null, "lastmodified": "2023-06-06T16:57:58.865669", "ref_allele": "G", "alt_allele": "T", "cdna_change": "c.881G>T", "protein_change": "p.Gly294Val", "transcript_id": null, "dbsnp_id": "NA", "variant_effect": null }, "relationships": { "in_combination": { "meta": { "count": 2 }, "data": [ { "type": "Combination", "id": "OLI1458" }, { "type": "Combination", "id": "OLI1459" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/3060/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/3060/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/3060/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/3060/gene/?format=api" }, "data": { "type": "Gene", "id": "TARDBP" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/3060/?format=api" } }, { "type": "SmallVariant", "id": "3416", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": 1.593e-05, "gnomad_AFR_maf": 0.0, "gnomad_AMR_maf": 0.0, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 3.526e-05, "gnomad_OTH_maf": 0.0, "gnomad_SAS_maf": 0.0, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Tolerated", "pp2_hvar_prediction": "Benign", "cadd_prediction": 2.838561, "mutationtaster_prediction": "Disease causing" }, "status": "CU", "genomic_position_hg19": 11082325, "genomic_position_hg38": 11022268, "chromosome": "1", "annotation_flag": null, "lastmodified": "2024-02-29T15:02:24.639416", "ref_allele": "G", "alt_allele": "A", "cdna_change": "c.859G>A", "protein_change": "p.Gly287Ser", "transcript_id": "NM_007375.4", "dbsnp_id": "NA", "variant_effect": null }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI1620" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/3416/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/3416/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/3416/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/3416/gene/?format=api" }, "data": { "type": "Gene", "id": "TARDBP" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/3416/?format=api" } }, { "type": "SmallVariant", "id": "3440", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": 1.194e-05, "gnomad_AFR_maf": 0.0, "gnomad_AMR_maf": 0.0, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 2.644e-05, "gnomad_OTH_maf": 0.0, "gnomad_SAS_maf": 0.0, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Tolerated", "pp2_hvar_prediction": "Benign", "cadd_prediction": 2.64195, "mutationtaster_prediction": "Disease causing" }, "status": "CU", "genomic_position_hg19": 11082347, "genomic_position_hg38": 11022290, "chromosome": "1", "annotation_flag": null, "lastmodified": "2024-02-29T15:02:25.689589", "ref_allele": "G", "alt_allele": "T", "cdna_change": "c.881G>T", "protein_change": "p.Gly294Val", "transcript_id": "NM_007375.4", "dbsnp_id": "NA", "variant_effect": null }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI1636" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/3440/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/3440/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/3440/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/3440/gene/?format=api" }, "data": { "type": "Gene", "id": "TARDBP" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/3440/?format=api" } }, { "type": "SmallVariant", "id": "3444", "attributes": { 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