This API endpoint handles listing (/variants) and retrieval (/variants/<ID>/) of genetic variants from the database

GET /api/genes/TACR3/variants/?format=api
HTTP 200 OK
Allow: GET, HEAD, OPTIONS
Content-Type: application/vnd.api+json
Vary: Accept

{
    "data": [
        {
            "type": "SmallVariant",
            "id": "2694",
            "attributes": {
                "frequencies": {
                    "KGP_genomes_maf": null,
                    "KGP_genomes_AFR_maf": null,
                    "KGP_genomes_AMR_maf": null,
                    "KGP_genomes_EAS_maf": null,
                    "KGP_genomes_EUR_maf": null,
                    "KGP_genomes_SAS_maf": null,
                    "gnomad_maf": null,
                    "gnomad_AFR_maf": null,
                    "gnomad_AMR_maf": null,
                    "gnomad_ASJ_maf": null,
                    "gnomad_EAS_maf": null,
                    "gnomad_FIN_maf": null,
                    "gnomad_NFE_maf": null,
                    "gnomad_OTH_maf": null,
                    "gnomad_SAS_maf": null,
                    "ESP_AA_maf": null,
                    "ESP_EA_maf": null
                },
                "predictions": {
                    "sift_prediction": "-",
                    "pp2_hvar_prediction": "-",
                    "cadd_prediction": null,
                    "mutationtaster_prediction": "-"
                },
                "status": "CU",
                "genomic_position_hg19": null,
                "genomic_position_hg38": null,
                "chromosome": "4",
                "annotation_flag": null,
                "lastmodified": "2023-05-16T12:02:44.431689",
                "ref_allele": null,
                "alt_allele": null,
                "cdna_change": "c.238+1G>C",
                "protein_change": null,
                "transcript_id": "NM_001059.3",
                "dbsnp_id": "NA",
                "variant_effect": null
            },
            "relationships": {
                "in_combination": {
                    "meta": {
                        "count": 1
                    },
                    "data": [
                        {
                            "type": "Combination",
                            "id": "OLI1279"
                        }
                    ],
                    "links": {
                        "self": "https://olida.ibsquare.be/api/variants/2694/relationships/in_combination?format=api",
                        "related": "https://olida.ibsquare.be/api/variants/2694/combinations/?format=api"
                    }
                },
                "gene_name": {
                    "links": {
                        "self": "https://olida.ibsquare.be/api/variants/2694/relationships/gene_name?format=api",
                        "related": "https://olida.ibsquare.be/api/variants/2694/gene/?format=api"
                    },
                    "data": {
                        "type": "Gene",
                        "id": "TACR3"
                    }
                }
            },
            "links": {
                "self": "https://olida.ibsquare.be/api/variants/2694/?format=api"
            }
        },
        {
            "type": "SmallVariant",
            "id": "819",
            "attributes": {
                "frequencies": {
                    "KGP_genomes_maf": 0.0126,
                    "KGP_genomes_AFR_maf": 0.0393,
                    "KGP_genomes_AMR_maf": 0.0072,
                    "KGP_genomes_EAS_maf": 0.003,
                    "KGP_genomes_EUR_maf": 0.003,
                    "KGP_genomes_SAS_maf": 0.0,
                    "gnomad_maf": 0.003403,
                    "gnomad_AFR_maf": 0.0237,
                    "gnomad_AMR_maf": 0.004492,
                    "gnomad_ASJ_maf": 0.002284,
                    "gnomad_EAS_maf": 0.00392,
                    "gnomad_FIN_maf": 0.0,
                    "gnomad_NFE_maf": 0.001569,
                    "gnomad_OTH_maf": 0.004737,
                    "gnomad_SAS_maf": 0.000392,
                    "ESP_AA_maf": 0.02156,
                    "ESP_EA_maf": 0.000814
                },
                "predictions": {
                    "sift_prediction": "Tolerated",
                    "pp2_hvar_prediction": "Benign",
                    "cadd_prediction": 2.060775,
                    "mutationtaster_prediction": "Polymorphism"
                },
                "status": "CU",
                "genomic_position_hg19": 104577382,
                "genomic_position_hg38": 103656225,
                "chromosome": "4",
                "annotation_flag": "automatically_attributed",
                "lastmodified": "2023-06-06T16:57:45.405833",
                "ref_allele": "T",
                "alt_allele": "C",
                "cdna_change": "c.857A>G",
                "protein_change": "p.Lys286Arg",
                "transcript_id": "NM_001059.2",
                "dbsnp_id": "rs2276973",
                "variant_effect": "missense"
            },
            "relationships": {
                "in_combination": {
                    "meta": {
                        "count": 1
                    },
                    "data": [
                        {
                            "type": "Combination",
                            "id": "OLI374"
                        }
                    ],
                    "links": {
                        "self": "https://olida.ibsquare.be/api/variants/819/relationships/in_combination?format=api",
                        "related": "https://olida.ibsquare.be/api/variants/819/combinations/?format=api"
                    }
                },
                "gene_name": {
                    "links": {
                        "self": "https://olida.ibsquare.be/api/variants/819/relationships/gene_name?format=api",
                        "related": "https://olida.ibsquare.be/api/variants/819/gene/?format=api"
                    },
                    "data": {
                        "type": "Gene",
                        "id": "TACR3"
                    }
                }
            },
            "links": {
                "self": "https://olida.ibsquare.be/api/variants/819/?format=api"
            }
        },
        {
            "type": "SmallVariant",
            "id": "851",
            "attributes": {
                "frequencies": {
                    "KGP_genomes_maf": 0.0002,
                    "KGP_genomes_AFR_maf": 0.0008,
                    "KGP_genomes_AMR_maf": 0.0,
                    "KGP_genomes_EAS_maf": 0.0,
                    "KGP_genomes_EUR_maf": 0.0,
                    "KGP_genomes_SAS_maf": 0.0,
                    "gnomad_maf": 0.0001084,
                    "gnomad_AFR_maf": 0.0007406,
                    "gnomad_AMR_maf": 8.71e-05,
                    "gnomad_ASJ_maf": 0.0,
                    "gnomad_EAS_maf": 0.0,
                    "gnomad_FIN_maf": 4.637e-05,
                    "gnomad_NFE_maf": 6.249e-05,
                    "gnomad_OTH_maf": 0.0001642,
                    "gnomad_SAS_maf": 9.803e-05,
                    "ESP_AA_maf": 0.000227,
                    "ESP_EA_maf": 0.0
                },
                "predictions": {
                    "sift_prediction": "Deleterious",
                    "pp2_hvar_prediction": "Damaging",
                    "cadd_prediction": 4.3825,
                    "mutationtaster_prediction": "Disease causing"
                },
                "status": "CU",
                "genomic_position_hg19": 104511146,
                "genomic_position_hg38": 103589989,
                "chromosome": "4",
                "annotation_flag": "automatically_attributed",
                "lastmodified": "2023-06-06T16:57:45.594073",
                "ref_allele": "C",
                "alt_allele": "T",
                "cdna_change": "c.1091G>A",
                "protein_change": "p.Arg364Gln",
                "transcript_id": "NM_001059.2",
                "dbsnp_id": "rs150288991",
                "variant_effect": "missense"
            },
            "relationships": {
                "in_combination": {
                    "meta": {
                        "count": 1
                    },
                    "data": [
                        {
                            "type": "Combination",
                            "id": "OLI392"
                        }
                    ],
                    "links": {
                        "self": "https://olida.ibsquare.be/api/variants/851/relationships/in_combination?format=api",
                        "related": "https://olida.ibsquare.be/api/variants/851/combinations/?format=api"
                    }
                },
                "gene_name": {
                    "links": {
                        "self": "https://olida.ibsquare.be/api/variants/851/relationships/gene_name?format=api",
                        "related": "https://olida.ibsquare.be/api/variants/851/gene/?format=api"
                    },
                    "data": {
                        "type": "Gene",
                        "id": "TACR3"
                    }
                }
            },
            "links": {
                "self": "https://olida.ibsquare.be/api/variants/851/?format=api"
            }
        },
        {
            "type": "SmallVariant",
            "id": "852",
            "attributes": {
                "frequencies": {
                    "KGP_genomes_maf": 0.0062,
                    "KGP_genomes_AFR_maf": 0.0,
                    "KGP_genomes_AMR_maf": 0.0072,
                    "KGP_genomes_EAS_maf": 0.0188,
                    "KGP_genomes_EUR_maf": 0.007,
                    "KGP_genomes_SAS_maf": 0.0,
                    "gnomad_maf": 0.005316,
                    "gnomad_AFR_maf": 0.0007998,
                    "gnomad_AMR_maf": 0.001736,
                    "gnomad_ASJ_maf": 0.0,
                    "gnomad_EAS_maf": 0.02052,
                    "gnomad_FIN_maf": 0.002218,
                    "gnomad_NFE_maf": 0.007068,
                    "gnomad_OTH_maf": 0.005059,
                    "gnomad_SAS_maf": 0.0001307,
                    "ESP_AA_maf": 0.001589,
                    "ESP_EA_maf": 0.007791
                },
                "predictions": {
                    "sift_prediction": "Tolerated",
                    "pp2_hvar_prediction": "Benign",
                    "cadd_prediction": 1.452221,
                    "mutationtaster_prediction": "Polymorphism"
                },
                "status": "CU",
                "genomic_position_hg19": 104510892,
                "genomic_position_hg38": 103589735,
                "chromosome": "4",
                "annotation_flag": "automatically_attributed",
                "lastmodified": "2023-06-06T16:57:45.600615",
                "ref_allele": "C",
                "alt_allele": "T",
                "cdna_change": "c.1345G>A",
                "protein_change": "p.Ala449Thr",
                "transcript_id": "NM_001059.2",
                "dbsnp_id": "rs17033889",
                "variant_effect": "missense"
            },
            "relationships": {
                "in_combination": {
                    "meta": {
                        "count": 2
                    },
                    "data": [
                        {
                            "type": "Combination",
                            "id": "OLI393"
                        },
                        {
                            "type": "Combination",
                            "id": "OLI395"
                        }
                    ],
                    "links": {
                        "self": "https://olida.ibsquare.be/api/variants/852/relationships/in_combination?format=api",
                        "related": "https://olida.ibsquare.be/api/variants/852/combinations/?format=api"
                    }
                },
                "gene_name": {
                    "links": {
                        "self": "https://olida.ibsquare.be/api/variants/852/relationships/gene_name?format=api",
                        "related": "https://olida.ibsquare.be/api/variants/852/gene/?format=api"
                    },
                    "data": {
                        "type": "Gene",
                        "id": "TACR3"
                    }
                }
            },
            "links": {
                "self": "https://olida.ibsquare.be/api/variants/852/?format=api"
            }
        },
        {
            "type": "SmallVariant",
            "id": "1085",
            "attributes": {
                "frequencies": {
                    "KGP_genomes_maf": null,
                    "KGP_genomes_AFR_maf": null,
                    "KGP_genomes_AMR_maf": null,
                    "KGP_genomes_EAS_maf": null,
                    "KGP_genomes_EUR_maf": null,
                    "KGP_genomes_SAS_maf": null,
                    "gnomad_maf": 0.0003068,
                    "gnomad_AFR_maf": 0.0001231,
                    "gnomad_AMR_maf": 5.798e-05,
                    "gnomad_ASJ_maf": 0.0001985,
                    "gnomad_EAS_maf": 0.0,
                    "gnomad_FIN_maf": 0.0,
                    "gnomad_NFE_maf": 0.0006261,
                    "gnomad_OTH_maf": 0.0,
                    "gnomad_SAS_maf": 0.0,
                    "ESP_AA_maf": 0.0,
                    "ESP_EA_maf": 0.0009302
                },
                "predictions": {
                    "sift_prediction": null,
                    "pp2_hvar_prediction": null,
                    "cadd_prediction": 8.939699,
                    "mutationtaster_prediction": "Disease causing"
                },
                "status": "CU",
                "genomic_position_hg19": 104577415,
                "genomic_position_hg38": 103656258,
                "chromosome": "4",
                "annotation_flag": "automatically_attributed",
                "lastmodified": "2023-06-06T16:57:47.037827",
                "ref_allele": "C",
                "alt_allele": "T",
                "cdna_change": "c.824G>A",
                "protein_change": "p.Trp275Ter",
                "transcript_id": "NM_001059.2",
                "dbsnp_id": "rs144292455",
                "variant_effect": "nonsense"
            },
            "relationships": {
                "in_combination": {
                    "meta": {
                        "count": 1
                    },
                    "data": [
                        {
                            "type": "Combination",
                            "id": "OLI512"
                        }
                    ],
                    "links": {
                        "self": "https://olida.ibsquare.be/api/variants/1085/relationships/in_combination?format=api",
                        "related": "https://olida.ibsquare.be/api/variants/1085/combinations/?format=api"
                    }
                },
                "gene_name": {
                    "links": {
                        "self": "https://olida.ibsquare.be/api/variants/1085/relationships/gene_name?format=api",
                        "related": "https://olida.ibsquare.be/api/variants/1085/gene/?format=api"
                    },
                    "data": {
                        "type": "Gene",
                        "id": "TACR3"
                    }
                }
            },
            "links": {
                "self": "https://olida.ibsquare.be/api/variants/1085/?format=api"
            }
        },
        {
            "type": "SmallVariant",
            "id": "1865",
            "attributes": {
                "frequencies": {
                    "KGP_genomes_maf": null,
                    "KGP_genomes_AFR_maf": null,
                    "KGP_genomes_AMR_maf": null,
                    "KGP_genomes_EAS_maf": null,
                    "KGP_genomes_EUR_maf": null,
                    "KGP_genomes_SAS_maf": null,
                    "gnomad_maf": 1.593e-05,
                    "gnomad_AFR_maf": 0.0,
                    "gnomad_AMR_maf": 0.0,
                    "gnomad_ASJ_maf": 0.0,
                    "gnomad_EAS_maf": 0.0001089,
                    "gnomad_FIN_maf": 0.0,
                    "gnomad_NFE_maf": 8.805e-06,
                    "gnomad_OTH_maf": 0.0,
                    "gnomad_SAS_maf": 3.267e-05,
                    "ESP_AA_maf": 0.0,
                    "ESP_EA_maf": 0.0001163
                },
                "predictions": {
                    "sift_prediction": "Deleterious",
                    "pp2_hvar_prediction": "Damaging",
                    "cadd_prediction": 3.992766,
                    "mutationtaster_prediction": "Polymorphism"
                },
                "status": "CU",
                "genomic_position_hg19": 104579420,
                "genomic_position_hg38": 103658263,
                "chromosome": "4",
                "annotation_flag": "automatically_attributed",
                "lastmodified": "2023-06-06T16:57:51.787762",
                "ref_allele": "C",
                "alt_allele": "T",
                "cdna_change": "c.689G>A",
                "protein_change": "p.Arg230His",
                "transcript_id": "NM_001059.2",
                "dbsnp_id": "rs368975103",
                "variant_effect": "missense"
            },
            "relationships": {
                "in_combination": {
                    "meta": {
                        "count": 1
                    },
                    "data": [
                        {
                            "type": "Combination",
                            "id": "OLI853"
                        }
                    ],
                    "links": {
                        "self": "https://olida.ibsquare.be/api/variants/1865/relationships/in_combination?format=api",
                        "related": "https://olida.ibsquare.be/api/variants/1865/combinations/?format=api"
                    }
                },
                "gene_name": {
                    "links": {
                        "self": "https://olida.ibsquare.be/api/variants/1865/relationships/gene_name?format=api",
                        "related": "https://olida.ibsquare.be/api/variants/1865/gene/?format=api"
                    },
                    "data": {
                        "type": "Gene",
                        "id": "TACR3"
                    }
                }
            },
            "links": {
                "self": "https://olida.ibsquare.be/api/variants/1865/?format=api"
            }
        },
        {
            "type": "SmallVariant",
            "id": "2693",
            "attributes": {
                "frequencies": {
                    "KGP_genomes_maf": null,
                    "KGP_genomes_AFR_maf": null,
                    "KGP_genomes_AMR_maf": null,
                    "KGP_genomes_EAS_maf": null,
                    "KGP_genomes_EUR_maf": null,
                    "KGP_genomes_SAS_maf": null,
                    "gnomad_maf": 3.976e-06,
                    "gnomad_AFR_maf": 0.0,
                    "gnomad_AMR_maf": 0.0,
                    "gnomad_ASJ_maf": 0.0,
                    "gnomad_EAS_maf": 0.0,
                    "gnomad_FIN_maf": 0.0,
                    "gnomad_NFE_maf": 8.79e-06,
                    "gnomad_OTH_maf": 0.0,
                    "gnomad_SAS_maf": 0.0,
                    "ESP_AA_maf": null,
                    "ESP_EA_maf": null
                },
                "predictions": {
                    "sift_prediction": "Deleterious",
                    "pp2_hvar_prediction": "Damaging",
                    "cadd_prediction": 3.736946,
                    "mutationtaster_prediction": "Polymorphism"
                },
                "status": "CU",
                "genomic_position_hg19": 104640396,
                "genomic_position_hg38": 103719239,
                "chromosome": "4",
                "annotation_flag": null,
                "lastmodified": "2023-06-06T16:57:56.675018",
                "ref_allele": "G",
                "alt_allele": "A",
                "cdna_change": "c.437C>T",
                "protein_change": "p.Ala146Val",
                "transcript_id": "NM_001059.3",
                "dbsnp_id": "NA",
                "variant_effect": null
            },
            "relationships": {
                "in_combination": {
                    "meta": {
                        "count": 1
                    },
                    "data": [
                        {
                            "type": "Combination",
                            "id": "OLI1278"
                        }
                    ],
                    "links": {
                        "self": "https://olida.ibsquare.be/api/variants/2693/relationships/in_combination?format=api",
                        "related": "https://olida.ibsquare.be/api/variants/2693/combinations/?format=api"
                    }
                },
                "gene_name": {
                    "links": {
                        "self": "https://olida.ibsquare.be/api/variants/2693/relationships/gene_name?format=api",
                        "related": "https://olida.ibsquare.be/api/variants/2693/gene/?format=api"
                    },
                    "data": {
                        "type": "Gene",
                        "id": "TACR3"
                    }
                }
            },
            "links": {
                "self": "https://olida.ibsquare.be/api/variants/2693/?format=api"
            }
        },
        {
            "type": "SmallVariant",
            "id": "2701",
            "attributes": {
                "frequencies": {
                    "KGP_genomes_maf": null,
                    "KGP_genomes_AFR_maf": null,
                    "KGP_genomes_AMR_maf": null,
                    "KGP_genomes_EAS_maf": null,
                    "KGP_genomes_EUR_maf": null,
                    "KGP_genomes_SAS_maf": null,
                    "gnomad_maf": null,
                    "gnomad_AFR_maf": null,
                    "gnomad_AMR_maf": null,
                    "gnomad_ASJ_maf": null,
                    "gnomad_EAS_maf": null,
                    "gnomad_FIN_maf": null,
                    "gnomad_NFE_maf": null,
                    "gnomad_OTH_maf": null,
                    "gnomad_SAS_maf": null,
                    "ESP_AA_maf": null,
                    "ESP_EA_maf": null
                },
                "predictions": {
                    "sift_prediction": "Deleterious",
                    "pp2_hvar_prediction": "Damaging",
                    "cadd_prediction": 4.038306,
                    "mutationtaster_prediction": "Disease causing"
                },
                "status": "CU",
                "genomic_position_hg19": 104577440,
                "genomic_position_hg38": 103656283,
                "chromosome": "4",
                "annotation_flag": null,
                "lastmodified": "2023-06-06T16:57:56.718699",
                "ref_allele": "A",
                "alt_allele": "G",
                "cdna_change": "c.799T>C",
                "protein_change": "p.Tyr267His",
                "transcript_id": "NM_001059.3",
                "dbsnp_id": "NA",
                "variant_effect": null
            },
            "relationships": {
                "in_combination": {
                    "meta": {
                        "count": 1
                    },
                    "data": [
                        {
                            "type": "Combination",
                            "id": "OLI1282"
                        }
                    ],
                    "links": {
                        "self": "https://olida.ibsquare.be/api/variants/2701/relationships/in_combination?format=api",
                        "related": "https://olida.ibsquare.be/api/variants/2701/combinations/?format=api"
                    }
                },
                "gene_name": {
                    "links": {
                        "self": "https://olida.ibsquare.be/api/variants/2701/relationships/gene_name?format=api",
                        "related": "https://olida.ibsquare.be/api/variants/2701/gene/?format=api"
                    },
                    "data": {
                        "type": "Gene",
                        "id": "TACR3"
                    }
                }
            },
            "links": {
                "self": "https://olida.ibsquare.be/api/variants/2701/?format=api"
            }
        },
        {
            "type": "SmallVariant",
            "id": "2703",
            "attributes": {
                "frequencies": {
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                    "KGP_genomes_AFR_maf": null,
                    "KGP_genomes_AMR_maf": null,
                    "KGP_genomes_EAS_maf": null,
                    "KGP_genomes_EUR_maf": null,
                    "KGP_genomes_SAS_maf": null,
                    "gnomad_maf": 0.0003068,
                    "gnomad_AFR_maf": 0.0001231,
                    "gnomad_AMR_maf": 5.798e-05,
                    "gnomad_ASJ_maf": 0.0001985,
                    "gnomad_EAS_maf": 0.0,
                    "gnomad_FIN_maf": 0.0,
                    "gnomad_NFE_maf": 0.0006261,
                    "gnomad_OTH_maf": 0.0,
                    "gnomad_SAS_maf": 0.0,
                    "ESP_AA_maf": null,
                    "ESP_EA_maf": null
                },
                "predictions": {
                    "sift_prediction": null,
                    "pp2_hvar_prediction": null,
                    "cadd_prediction": 8.939699,
                    "mutationtaster_prediction": "Disease causing"
                },
                "status": "CU",
                "genomic_position_hg19": 104577415,
                "genomic_position_hg38": 103656258,
                "chromosome": "4",
                "annotation_flag": null,
                "lastmodified": "2023-06-06T16:57:56.731476",
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