This API endpoint handles listing (/variants) and retrieval (/variants/<ID>/) of genetic variants from the database

GET /api/genes/STXBP2/variants/?format=api
HTTP 200 OK
Allow: GET, HEAD, OPTIONS
Content-Type: application/vnd.api+json
Vary: Accept

{
    "data": [
        {
            "type": "SmallVariant",
            "id": "1132",
            "attributes": {
                "frequencies": {
                    "KGP_genomes_maf": null,
                    "KGP_genomes_AFR_maf": null,
                    "KGP_genomes_AMR_maf": null,
                    "KGP_genomes_EAS_maf": null,
                    "KGP_genomes_EUR_maf": null,
                    "KGP_genomes_SAS_maf": null,
                    "gnomad_maf": null,
                    "gnomad_AFR_maf": null,
                    "gnomad_AMR_maf": null,
                    "gnomad_ASJ_maf": null,
                    "gnomad_EAS_maf": null,
                    "gnomad_FIN_maf": null,
                    "gnomad_NFE_maf": null,
                    "gnomad_OTH_maf": null,
                    "gnomad_SAS_maf": null,
                    "ESP_AA_maf": null,
                    "ESP_EA_maf": null
                },
                "predictions": {
                    "sift_prediction": null,
                    "pp2_hvar_prediction": null,
                    "cadd_prediction": null,
                    "mutationtaster_prediction": null
                },
                "status": "CU",
                "genomic_position_hg19": null,
                "genomic_position_hg38": null,
                "chromosome": "19",
                "annotation_flag": "not_found_in_databases",
                "lastmodified": "2021-10-18T11:01:04.531109",
                "ref_allele": null,
                "alt_allele": null,
                "cdna_change": "c.1782*12G>A",
                "protein_change": null,
                "transcript_id": null,
                "dbsnp_id": "NA",
                "variant_effect": "unknown"
            },
            "relationships": {
                "in_combination": {
                    "meta": {
                        "count": 2
                    },
                    "data": [
                        {
                            "type": "Combination",
                            "id": "OLI541"
                        },
                        {
                            "type": "Combination",
                            "id": "OLI542"
                        }
                    ],
                    "links": {
                        "self": "https://olida.ibsquare.be/api/variants/1132/relationships/in_combination?format=api",
                        "related": "https://olida.ibsquare.be/api/variants/1132/combinations/?format=api"
                    }
                },
                "gene_name": {
                    "links": {
                        "self": "https://olida.ibsquare.be/api/variants/1132/relationships/gene_name?format=api",
                        "related": "https://olida.ibsquare.be/api/variants/1132/gene/?format=api"
                    },
                    "data": {
                        "type": "Gene",
                        "id": "STXBP2"
                    }
                }
            },
            "links": {
                "self": "https://olida.ibsquare.be/api/variants/1132/?format=api"
            }
        },
        {
            "type": "SmallVariant",
            "id": "49",
            "attributes": {
                "frequencies": {
                    "KGP_genomes_maf": null,
                    "KGP_genomes_AFR_maf": null,
                    "KGP_genomes_AMR_maf": null,
                    "KGP_genomes_EAS_maf": null,
                    "KGP_genomes_EUR_maf": null,
                    "KGP_genomes_SAS_maf": null,
                    "gnomad_maf": 7.982e-06,
                    "gnomad_AFR_maf": 0.0,
                    "gnomad_AMR_maf": 0.0,
                    "gnomad_ASJ_maf": 0.0,
                    "gnomad_EAS_maf": 0.0001089,
                    "gnomad_FIN_maf": 0.0,
                    "gnomad_NFE_maf": 0.0,
                    "gnomad_OTH_maf": 0.0,
                    "gnomad_SAS_maf": 0.0,
                    "ESP_AA_maf": null,
                    "ESP_EA_maf": null
                },
                "predictions": {
                    "sift_prediction": "Tolerated",
                    "pp2_hvar_prediction": "Benign",
                    "cadd_prediction": 2.39537,
                    "mutationtaster_prediction": "Polymorphism"
                },
                "status": "CU",
                "genomic_position_hg19": 7706933,
                "genomic_position_hg38": 7642047,
                "chromosome": "19",
                "annotation_flag": "automatically_attributed",
                "lastmodified": "2023-06-06T16:57:40.815183",
                "ref_allele": "A",
                "alt_allele": "C",
                "cdna_change": "c.592A>C",
                "protein_change": "p.Thr198Pro",
                "transcript_id": "NM_006949.3",
                "dbsnp_id": "rs760187284",
                "variant_effect": "missense"
            },
            "relationships": {
                "in_combination": {
                    "meta": {
                        "count": 1
                    },
                    "data": [
                        {
                            "type": "Combination",
                            "id": "OLI025"
                        }
                    ],
                    "links": {
                        "self": "https://olida.ibsquare.be/api/variants/49/relationships/in_combination?format=api",
                        "related": "https://olida.ibsquare.be/api/variants/49/combinations/?format=api"
                    }
                },
                "gene_name": {
                    "links": {
                        "self": "https://olida.ibsquare.be/api/variants/49/relationships/gene_name?format=api",
                        "related": "https://olida.ibsquare.be/api/variants/49/gene/?format=api"
                    },
                    "data": {
                        "type": "Gene",
                        "id": "STXBP2"
                    }
                }
            },
            "links": {
                "self": "https://olida.ibsquare.be/api/variants/49/?format=api"
            }
        },
        {
            "type": "SmallVariant",
            "id": "106",
            "attributes": {
                "frequencies": {
                    "KGP_genomes_maf": null,
                    "KGP_genomes_AFR_maf": null,
                    "KGP_genomes_AMR_maf": null,
                    "KGP_genomes_EAS_maf": null,
                    "KGP_genomes_EUR_maf": null,
                    "KGP_genomes_SAS_maf": null,
                    "gnomad_maf": null,
                    "gnomad_AFR_maf": null,
                    "gnomad_AMR_maf": null,
                    "gnomad_ASJ_maf": null,
                    "gnomad_EAS_maf": null,
                    "gnomad_FIN_maf": null,
                    "gnomad_NFE_maf": null,
                    "gnomad_OTH_maf": null,
                    "gnomad_SAS_maf": null,
                    "ESP_AA_maf": null,
                    "ESP_EA_maf": null
                },
                "predictions": {
                    "sift_prediction": "Tolerated",
                    "pp2_hvar_prediction": "Benign",
                    "cadd_prediction": 2.027342,
                    "mutationtaster_prediction": "Polymorphism"
                },
                "status": "CU",
                "genomic_position_hg19": 7702046,
                "genomic_position_hg38": 7637160,
                "chromosome": "19",
                "annotation_flag": "automatically_attributed",
                "lastmodified": "2023-06-06T16:57:41.148223",
                "ref_allele": "C",
                "alt_allele": "T",
                "cdna_change": "c.11C>T",
                "protein_change": "p.Ser4Leu",
                "transcript_id": "NM_006949.3",
                "dbsnp_id": "rs1367435143",
                "variant_effect": "missense"
            },
            "relationships": {
                "in_combination": {
                    "meta": {
                        "count": 1
                    },
                    "data": [
                        {
                            "type": "Combination",
                            "id": "OLI053"
                        }
                    ],
                    "links": {
                        "self": "https://olida.ibsquare.be/api/variants/106/relationships/in_combination?format=api",
                        "related": "https://olida.ibsquare.be/api/variants/106/combinations/?format=api"
                    }
                },
                "gene_name": {
                    "links": {
                        "self": "https://olida.ibsquare.be/api/variants/106/relationships/gene_name?format=api",
                        "related": "https://olida.ibsquare.be/api/variants/106/gene/?format=api"
                    },
                    "data": {
                        "type": "Gene",
                        "id": "STXBP2"
                    }
                }
            },
            "links": {
                "self": "https://olida.ibsquare.be/api/variants/106/?format=api"
            }
        },
        {
            "type": "SmallVariant",
            "id": "114",
            "attributes": {
                "frequencies": {
                    "KGP_genomes_maf": null,
                    "KGP_genomes_AFR_maf": null,
                    "KGP_genomes_AMR_maf": null,
                    "KGP_genomes_EAS_maf": null,
                    "KGP_genomes_EUR_maf": null,
                    "KGP_genomes_SAS_maf": null,
                    "gnomad_maf": 8.73e-06,
                    "gnomad_AFR_maf": 0.0,
                    "gnomad_AMR_maf": 0.0,
                    "gnomad_ASJ_maf": 0.0,
                    "gnomad_EAS_maf": 0.0001192,
                    "gnomad_FIN_maf": 0.0,
                    "gnomad_NFE_maf": 0.0,
                    "gnomad_OTH_maf": 0.0,
                    "gnomad_SAS_maf": 0.0,
                    "ESP_AA_maf": null,
                    "ESP_EA_maf": null
                },
                "predictions": {
                    "sift_prediction": "Tolerated",
                    "pp2_hvar_prediction": "Benign",
                    "cadd_prediction": 0.689866,
                    "mutationtaster_prediction": "Polymorphism"
                },
                "status": "CU",
                "genomic_position_hg19": 7712375,
                "genomic_position_hg38": 7647489,
                "chromosome": "19",
                "annotation_flag": "automatically_attributed",
                "lastmodified": "2023-06-06T16:57:41.197261",
                "ref_allele": "G",
                "alt_allele": "T",
                "cdna_change": "c.1674G>T",
                "protein_change": "p.Glu558Asp",
                "transcript_id": "NM_006949.3",
                "dbsnp_id": "rs780461960",
                "variant_effect": "missense"
            },
            "relationships": {
                "in_combination": {
                    "meta": {
                        "count": 1
                    },
                    "data": [
                        {
                            "type": "Combination",
                            "id": "OLI057"
                        }
                    ],
                    "links": {
                        "self": "https://olida.ibsquare.be/api/variants/114/relationships/in_combination?format=api",
                        "related": "https://olida.ibsquare.be/api/variants/114/combinations/?format=api"
                    }
                },
                "gene_name": {
                    "links": {
                        "self": "https://olida.ibsquare.be/api/variants/114/relationships/gene_name?format=api",
                        "related": "https://olida.ibsquare.be/api/variants/114/gene/?format=api"
                    },
                    "data": {
                        "type": "Gene",
                        "id": "STXBP2"
                    }
                }
            },
            "links": {
                "self": "https://olida.ibsquare.be/api/variants/114/?format=api"
            }
        },
        {
            "type": "SmallVariant",
            "id": "1125",
            "attributes": {
                "frequencies": {
                    "KGP_genomes_maf": 0.0046,
                    "KGP_genomes_AFR_maf": 0.0015,
                    "KGP_genomes_AMR_maf": 0.0072,
                    "KGP_genomes_EAS_maf": 0.0,
                    "KGP_genomes_EUR_maf": 0.0139,
                    "KGP_genomes_SAS_maf": 0.002,
                    "gnomad_maf": 0.01078,
                    "gnomad_AFR_maf": 0.002339,
                    "gnomad_AMR_maf": 0.00619,
                    "gnomad_ASJ_maf": 0.02431,
                    "gnomad_EAS_maf": 5.438e-05,
                    "gnomad_FIN_maf": 0.005883,
                    "gnomad_NFE_maf": 0.01633,
                    "gnomad_OTH_maf": 0.01565,
                    "gnomad_SAS_maf": 0.00428,
                    "ESP_AA_maf": 0.003404,
                    "ESP_EA_maf": 0.01616
                },
                "predictions": {
                    "sift_prediction": "Deleterious",
                    "pp2_hvar_prediction": "Damaging",
                    "cadd_prediction": 3.56434,
                    "mutationtaster_prediction": "Polymorphism"
                },
                "status": "CU",
                "genomic_position_hg19": 7708058,
                "genomic_position_hg38": 7643172,
                "chromosome": "19",
                "annotation_flag": "automatically_attributed",
                "lastmodified": "2023-06-06T16:57:47.284191",
                "ref_allele": "C",
                "alt_allele": "T",
                "cdna_change": "c.1034C>T",
                "protein_change": "p.Thr345Met",
                "transcript_id": "NM_006949.3",
                "dbsnp_id": "rs117761837",
                "variant_effect": "missense"
            },
            "relationships": {
                "in_combination": {
                    "meta": {
                        "count": 3
                    },
                    "data": [
                        {
                            "type": "Combination",
                            "id": "OLI535"
                        },
                        {
                            "type": "Combination",
                            "id": "OLI536"
                        },
                        {
                            "type": "Combination",
                            "id": "OLI546"
                        }
                    ],
                    "links": {
                        "self": "https://olida.ibsquare.be/api/variants/1125/relationships/in_combination?format=api",
                        "related": "https://olida.ibsquare.be/api/variants/1125/combinations/?format=api"
                    }
                },
                "gene_name": {
                    "links": {
                        "self": "https://olida.ibsquare.be/api/variants/1125/relationships/gene_name?format=api",
                        "related": "https://olida.ibsquare.be/api/variants/1125/gene/?format=api"
                    },
                    "data": {
                        "type": "Gene",
                        "id": "STXBP2"
                    }
                }
            },
            "links": {
                "self": "https://olida.ibsquare.be/api/variants/1125/?format=api"
            }
        },
        {
            "type": "SmallVariant",
            "id": "1127",
            "attributes": {
                "frequencies": {
                    "KGP_genomes_maf": null,
                    "KGP_genomes_AFR_maf": null,
                    "KGP_genomes_AMR_maf": null,
                    "KGP_genomes_EAS_maf": null,
                    "KGP_genomes_EUR_maf": null,
                    "KGP_genomes_SAS_maf": null,
                    "gnomad_maf": 0.001401,
                    "gnomad_AFR_maf": 0.0004567,
                    "gnomad_AMR_maf": 0.000957,
                    "gnomad_ASJ_maf": 0.0,
                    "gnomad_EAS_maf": 0.0,
                    "gnomad_FIN_maf": 0.001347,
                    "gnomad_NFE_maf": 0.002393,
                    "gnomad_OTH_maf": 0.001325,
                    "gnomad_SAS_maf": 9.817e-05,
                    "ESP_AA_maf": 0.0,
                    "ESP_EA_maf": 0.002562
                },
                "predictions": {
                    "sift_prediction": "Deleterious",
                    "pp2_hvar_prediction": "Damaging",
                    "cadd_prediction": 3.438596,
                    "mutationtaster_prediction": "Polymorphism"
                },
                "status": "CU",
                "genomic_position_hg19": 7712287,
                "genomic_position_hg38": 7647401,
                "chromosome": "19",
                "annotation_flag": "automatically_attributed",
                "lastmodified": "2023-06-06T16:57:47.296861",
                "ref_allele": "G",
                "alt_allele": "C",
                "cdna_change": "c.1586G>C",
                "protein_change": "p.Arg529Pro",
                "transcript_id": "NM_006949.3",
                "dbsnp_id": "rs35490401",
                "variant_effect": "missense"
            },
            "relationships": {
                "in_combination": {
                    "meta": {
                        "count": 1
                    },
                    "data": [
                        {
                            "type": "Combination",
                            "id": "OLI537"
                        }
                    ],
                    "links": {
                        "self": "https://olida.ibsquare.be/api/variants/1127/relationships/in_combination?format=api",
                        "related": "https://olida.ibsquare.be/api/variants/1127/combinations/?format=api"
                    }
                },
                "gene_name": {
                    "links": {
                        "self": "https://olida.ibsquare.be/api/variants/1127/relationships/gene_name?format=api",
                        "related": "https://olida.ibsquare.be/api/variants/1127/gene/?format=api"
                    },
                    "data": {
                        "type": "Gene",
                        "id": "STXBP2"
                    }
                }
            },
            "links": {
                "self": "https://olida.ibsquare.be/api/variants/1127/?format=api"
            }
        },
        {
            "type": "SmallVariant",
            "id": "1128",
            "attributes": {
                "frequencies": {
                    "KGP_genomes_maf": 0.0006,
                    "KGP_genomes_AFR_maf": 0.0015,
                    "KGP_genomes_AMR_maf": 0.0014,
                    "KGP_genomes_EAS_maf": 0.0,
                    "KGP_genomes_EUR_maf": 0.0,
                    "KGP_genomes_SAS_maf": 0.0,
                    "gnomad_maf": 0.0004241,
                    "gnomad_AFR_maf": 0.005132,
                    "gnomad_AMR_maf": 0.0002326,
                    "gnomad_ASJ_maf": 0.0,
                    "gnomad_EAS_maf": 0.0005567,
                    "gnomad_FIN_maf": 0.0,
                    "gnomad_NFE_maf": 3.714e-05,
                    "gnomad_OTH_maf": 0.0,
                    "gnomad_SAS_maf": 9.84e-05,
                    "ESP_AA_maf": 0.007976,
                    "ESP_EA_maf": 0.000117
                },
                "predictions": {
                    "sift_prediction": "Deleterious",
                    "pp2_hvar_prediction": "Possibly Damaging",
                    "cadd_prediction": 3.143566,
                    "mutationtaster_prediction": "Polymorphism"
                },
                "status": "CU",
                "genomic_position_hg19": 7712054,
                "genomic_position_hg38": 7647168,
                "chromosome": "19",
                "annotation_flag": "automatically_attributed",
                "lastmodified": "2023-06-06T16:57:47.303166",
                "ref_allele": "G",
                "alt_allele": "A",
                "cdna_change": "c.1459G>A",
                "protein_change": "p.Val487Met",
                "transcript_id": "NM_006949.3",
                "dbsnp_id": "rs150174842",
                "variant_effect": "missense"
            },
            "relationships": {
                "in_combination": {
                    "meta": {
                        "count": 1
                    },
                    "data": [
                        {
                            "type": "Combination",
                            "id": "OLI538"
                        }
                    ],
                    "links": {
                        "self": "https://olida.ibsquare.be/api/variants/1128/relationships/in_combination?format=api",
                        "related": "https://olida.ibsquare.be/api/variants/1128/combinations/?format=api"
                    }
                },
                "gene_name": {
                    "links": {
                        "self": "https://olida.ibsquare.be/api/variants/1128/relationships/gene_name?format=api",
                        "related": "https://olida.ibsquare.be/api/variants/1128/gene/?format=api"
                    },
                    "data": {
                        "type": "Gene",
                        "id": "STXBP2"
                    }
                }
            },
            "links": {
                "self": "https://olida.ibsquare.be/api/variants/1128/?format=api"
            }
        },
        {
            "type": "SmallVariant",
            "id": "1129",
            "attributes": {
                "frequencies": {
                    "KGP_genomes_maf": 0.0044,
                    "KGP_genomes_AFR_maf": 0.0008,
                    "KGP_genomes_AMR_maf": 0.0014,
                    "KGP_genomes_EAS_maf": 0.0,
                    "KGP_genomes_EUR_maf": 0.0189,
                    "KGP_genomes_SAS_maf": 0.001,
                    "gnomad_maf": 0.01178,
                    "gnomad_AFR_maf": 0.004553,
                    "gnomad_AMR_maf": 0.003527,
                    "gnomad_ASJ_maf": 0.004365,
                    "gnomad_EAS_maf": 0.0,
                    "gnomad_FIN_maf": 0.01216,
                    "gnomad_NFE_maf": 0.0199,
                    "gnomad_OTH_maf": 0.01141,
                    "gnomad_SAS_maf": 0.004083,
                    "ESP_AA_maf": 0.00522,
                    "ESP_EA_maf": 0.01802
                },
                "predictions": {
                    "sift_prediction": null,
                    "pp2_hvar_prediction": null,
                    "cadd_prediction": -0.227189,
                    "mutationtaster_prediction": "Polymorphism"
                },
                "status": "CU",
                "genomic_position_hg19": 7707311,
                "genomic_position_hg38": 7642425,
                "chromosome": "19",
                "annotation_flag": "automatically_attributed_and_verified",
                "lastmodified": "2023-06-06T16:57:47.309423",
                "ref_allele": "C",
                "alt_allele": "T",
                "cdna_change": "c.795-4C>T",
                "protein_change": null,
                "transcript_id": "NM_006949.3",
                "dbsnp_id": "rs151257815",
                "variant_effect": "splicing"
            },
            "relationships": {
                "in_combination": {
                    "meta": {
                        "count": 1
                    },
                    "data": [
                        {
                            "type": "Combination",
                            "id": "OLI539"
                        }
                    ],
                    "links": {
                        "self": "https://olida.ibsquare.be/api/variants/1129/relationships/in_combination?format=api",
                        "related": "https://olida.ibsquare.be/api/variants/1129/combinations/?format=api"
                    }
                },
                "gene_name": {
                    "links": {
                        "self": "https://olida.ibsquare.be/api/variants/1129/relationships/gene_name?format=api",
                        "related": "https://olida.ibsquare.be/api/variants/1129/gene/?format=api"
                    },
                    "data": {
                        "type": "Gene",
                        "id": "STXBP2"
                    }
                }
            },
            "links": {
                "self": "https://olida.ibsquare.be/api/variants/1129/?format=api"
            }
        },
        {
            "type": "SmallVariant",
            "id": "1130",
            "attributes": {
                "frequencies": {
                    "KGP_genomes_maf": null,
                    "KGP_genomes_AFR_maf": null,
                    "KGP_genomes_AMR_maf": null,
                    "KGP_genomes_EAS_maf": null,
                    "KGP_genomes_EUR_maf": null,
                    "KGP_genomes_SAS_maf": null,
                    "gnomad_maf": 8.387e-05,
                    "gnomad_AFR_maf": 0.0,
                    "gnomad_AMR_maf": 5.789e-05,
                    "gnomad_ASJ_maf": 0.0,
                    "gnomad_EAS_maf": 0.0,
                    "gnomad_FIN_maf": 0.0,
                    "gnomad_NFE_maf": 0.0001592,
                    "gnomad_OTH_maf": 0.0,
                    "gnomad_SAS_maf": 3.267e-05,
                    "ESP_AA_maf": null,
                    "ESP_EA_maf": null
                },
                "predictions": {
                    "sift_prediction": "Deleterious",
                    "pp2_hvar_prediction": "Possibly Damaging",
                    "cadd_prediction": 3.698531,
                    "mutationtaster_prediction": "Polymorphism"
                },
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