Variant List
This API endpoint handles listing (/variants) and retrieval (/variants/<ID>/) of genetic variants from the database
GET /api/genes/RELN/variants/?format=api
{ "data": [ { "type": "SmallVariant", "id": "1852", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": 1.99e-05, "gnomad_AFR_maf": 0.0, "gnomad_AMR_maf": 0.0, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 5.438e-05, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 0.0, "gnomad_OTH_maf": 0.0001633, "gnomad_SAS_maf": 9.801e-05, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Tolerated", "pp2_hvar_prediction": "Benign", "cadd_prediction": 2.937751, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 103417057, "genomic_position_hg38": 103776610, "chromosome": "7", "annotation_flag": "automatically_attributed", "lastmodified": "2023-06-06T16:57:51.703396", "ref_allele": "C", "alt_allele": "T", "cdna_change": "c.491G>A", "protein_change": "p.Arg164Gln", "transcript_id": "NM_005045.3", "dbsnp_id": "rs1193525098", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI846" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/1852/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/1852/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/1852/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/1852/gene/?format=api" }, "data": { "type": "Gene", "id": "RELN" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/1852/?format=api" } }, { "type": "SmallVariant", "id": "1871", "attributes": { "frequencies": { "KGP_genomes_maf": 0.0002, "KGP_genomes_AFR_maf": 0.0, "KGP_genomes_AMR_maf": 0.0, "KGP_genomes_EAS_maf": 0.001, "KGP_genomes_EUR_maf": 0.0, "KGP_genomes_SAS_maf": 0.0, "gnomad_maf": 0.0003185, "gnomad_AFR_maf": 0.0, "gnomad_AMR_maf": 0.0, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 0.004351, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 0.0, "gnomad_OTH_maf": 0.0, "gnomad_SAS_maf": 0.0, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Tolerated", "pp2_hvar_prediction": "Damaging", "cadd_prediction": 3.364975, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 103124173, "genomic_position_hg38": 103483726, "chromosome": "7", "annotation_flag": "automatically_attributed", "lastmodified": "2023-06-06T16:57:51.813838", "ref_allele": "T", "alt_allele": "C", "cdna_change": "c.10108A>G", "protein_change": "p.Thr3370Ala", "transcript_id": "NM_005045.3", "dbsnp_id": "rs570807790", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 2 }, "data": [ { "type": "Combination", "id": "OLI854" }, { "type": "Combination", "id": "OLI907" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/1871/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/1871/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/1871/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/1871/gene/?format=api" }, "data": { "type": "Gene", "id": "RELN" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/1871/?format=api" } }, { "type": "SmallVariant", "id": "1891", "attributes": { "frequencies": { "KGP_genomes_maf": 0.0024, "KGP_genomes_AFR_maf": 0.0, "KGP_genomes_AMR_maf": 0.0, "KGP_genomes_EAS_maf": 0.002, "KGP_genomes_EUR_maf": 0.0099, "KGP_genomes_SAS_maf": 0.0, "gnomad_maf": 0.005604, "gnomad_AFR_maf": 0.0, "gnomad_AMR_maf": 5.8e-05, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 0.005739, "gnomad_FIN_maf": 0.04962, "gnomad_NFE_maf": 0.001742, "gnomad_OTH_maf": 0.004923, "gnomad_SAS_maf": 6.538e-05, "ESP_AA_maf": 0.0, "ESP_EA_maf": 0.0001163 }, "predictions": { "sift_prediction": "Deleterious", "pp2_hvar_prediction": "Damaging", "cadd_prediction": 4.179723, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 103234329, "genomic_position_hg38": 103593882, "chromosome": "7", "annotation_flag": "automatically_attributed", "lastmodified": "2023-06-06T16:57:51.937325", "ref_allele": "T", "alt_allele": "G", "cdna_change": "c.3712A>C", "protein_change": "p.Asn1238His", "transcript_id": "NM_005045.3", "dbsnp_id": "rs114003896", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 2 }, "data": [ { "type": "Combination", "id": "OLI863" }, { "type": "Combination", "id": "OLI905" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/1891/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/1891/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/1891/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/1891/gene/?format=api" }, "data": { "type": "Gene", "id": "RELN" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/1891/?format=api" } }, { "type": "SmallVariant", "id": "1906", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": null, "gnomad_AFR_maf": null, "gnomad_AMR_maf": null, "gnomad_ASJ_maf": null, "gnomad_EAS_maf": null, "gnomad_FIN_maf": null, "gnomad_NFE_maf": null, "gnomad_OTH_maf": null, "gnomad_SAS_maf": null, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Tolerated", "pp2_hvar_prediction": "Damaging", "cadd_prediction": 3.421574, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 103214609, "genomic_position_hg38": 103574162, "chromosome": "7", "annotation_flag": "automatically_attributed", "lastmodified": "2023-06-06T16:57:52.035701", "ref_allele": "T", "alt_allele": "G", "cdna_change": "c.4441A>C", "protein_change": "p.Lys1481Gln", "transcript_id": "NM_005045.3", "dbsnp_id": "rs896069835", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 8 }, "data": [ { "type": "Combination", "id": "OLI872" }, { "type": "Combination", "id": "OLI875" }, { "type": "Combination", "id": "OLI876" }, { "type": "Combination", "id": "OLI877" }, { "type": "Combination", "id": "OLI878" }, { "type": "Combination", "id": "OLI900" }, { "type": "Combination", "id": "OLI901" }, { "type": "Combination", "id": "OLI905" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/1906/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/1906/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/1906/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/1906/gene/?format=api" }, "data": { "type": "Gene", "id": "RELN" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/1906/?format=api" } }, { "type": "SmallVariant", "id": "1930", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": 2.792e-05, "gnomad_AFR_maf": 0.0, "gnomad_AMR_maf": 0.0, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 0.0002732, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 0.0, "gnomad_OTH_maf": 0.0, "gnomad_SAS_maf": 6.545e-05, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Tolerated", "pp2_hvar_prediction": "Benign", "cadd_prediction": 1.828482, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 103205912, "genomic_position_hg38": 103565465, "chromosome": "7", "annotation_flag": "automatically_attributed", "lastmodified": "2023-06-06T16:57:52.191547", "ref_allele": "G", "alt_allele": "C", "cdna_change": "c.5023C>G", "protein_change": "p.Pro1675Ala", "transcript_id": "NM_005045.3", "dbsnp_id": "rs770657475", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI886" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/1930/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/1930/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/1930/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/1930/gene/?format=api" }, "data": { "type": "Gene", "id": "RELN" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/1930/?format=api" } }, { "type": "SmallVariant", "id": "1934", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": 3.98e-06, "gnomad_AFR_maf": 0.0, "gnomad_AMR_maf": 0.0, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 5.443e-05, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 0.0, "gnomad_OTH_maf": 0.0, "gnomad_SAS_maf": 0.0, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Deleterious", "pp2_hvar_prediction": "Damaging", "cadd_prediction": 4.113258, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 103474002, "genomic_position_hg38": 103833555, "chromosome": "7", "annotation_flag": "automatically_attributed", "lastmodified": "2023-06-06T16:57:52.217757", "ref_allele": "G", "alt_allele": "A", "cdna_change": "c.455C>T", "protein_change": "p.Thr152Ile", "transcript_id": "NM_005045.3", "dbsnp_id": "rs774401106", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI887" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/1934/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/1934/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/1934/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/1934/gene/?format=api" }, "data": { "type": "Gene", "id": "RELN" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/1934/?format=api" } }, { "type": "SmallVariant", "id": "1936", "attributes": { "frequencies": { "KGP_genomes_maf": 0.0002, "KGP_genomes_AFR_maf": 0.0, "KGP_genomes_AMR_maf": 0.0, "KGP_genomes_EAS_maf": 0.001, "KGP_genomes_EUR_maf": 0.0, "KGP_genomes_SAS_maf": 0.0, "gnomad_maf": 0.0001713, "gnomad_AFR_maf": 0.0, "gnomad_AMR_maf": 2.894e-05, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 0.002125, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 1.763e-05, "gnomad_OTH_maf": 0.0, "gnomad_SAS_maf": 3.266e-05, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Tolerated", "pp2_hvar_prediction": "Damaging", "cadd_prediction": 3.622997, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 103243887, "genomic_position_hg38": 103603440, "chromosome": "7", "annotation_flag": "automatically_attributed", "lastmodified": "2023-06-06T16:57:52.230702", "ref_allele": "G", "alt_allele": "A", "cdna_change": "c.3197C>T", "protein_change": "p.Pro1066Leu", "transcript_id": "NM_005045.3", "dbsnp_id": "rs116225248", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI888" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/1936/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/1936/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/1936/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/1936/gene/?format=api" }, "data": { "type": "Gene", "id": "RELN" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/1936/?format=api" } }, { "type": "SmallVariant", "id": "1970", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": null, "gnomad_AFR_maf": null, "gnomad_AMR_maf": null, "gnomad_ASJ_maf": null, "gnomad_EAS_maf": null, "gnomad_FIN_maf": null, "gnomad_NFE_maf": null, "gnomad_OTH_maf": null, "gnomad_SAS_maf": null, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Tolerated", "pp2_hvar_prediction": "Damaging", "cadd_prediction": 1.482338, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 103207049, "genomic_position_hg38": 103566602, "chromosome": "7", "annotation_flag": "automatically_attributed", "lastmodified": "2023-06-06T16:57:52.444866", "ref_allele": "A", "alt_allele": "T", "cdna_change": "c.4746T>A", "protein_change": "p.His1582Gln", "transcript_id": "NM_005045.3", "dbsnp_id": "rs797045913", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI913" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/1970/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/1970/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/1970/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/1970/gene/?format=api" }, "data": { "type": "Gene", "id": "RELN" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/1970/?format=api" } }, { "type": "SmallVariant", "id": "2332", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": 0.0001595, "gnomad_AFR_maf": 0.0, "gnomad_AMR_maf": 5.788e-05, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.0001388, "gnomad_NFE_maf": 0.0003001, "gnomad_OTH_maf": 0.0001634, "gnomad_SAS_maf": 0.0, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Deleterious", "pp2_hvar_prediction": "Damaging", "cadd_prediction": 4.250874, "mutationtaster_prediction": "Disease causing" }, "status": "CU", "genomic_position_hg19": 103281044, "genomic_position_hg38": 103640597, "chromosome": "7", "annotation_flag": null, "lastmodified": "2023-06-06T16:57:54.628275", "ref_allele": "G", "alt_allele": "A", "cdna_change": "c.2015C>T", "protein_change": "p.Pro672Leu", "transcript_id": null, "dbsnp_id": "NA", "variant_effect": null }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI1065" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/2332/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/2332/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/2332/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/2332/gene/?format=api" }, "data": { "type": "Gene", "id": "RELN" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/2332/?format=api" } }, { "type": "SmallVariant", "id": "2343", "attributes": { "frequencies": { "KGP_genomes_maf": 0.001, "KGP_genomes_AFR_maf": 0.0, "KGP_genomes_AMR_maf": 0.0, "KGP_genomes_EAS_maf": 0.001, "KGP_genomes_EUR_maf": 0.004, "KGP_genomes_SAS_maf": 0.0, "gnomad_maf": 0.002465, "gnomad_AFR_maf": 0.0006767, "gnomad_AMR_maf": 0.0006653, "gnomad_ASJ_maf": 0.0004967, "gnomad_EAS_maf": 5.44e-05, "gnomad_FIN_maf": 0.0005543, "gnomad_NFE_maf": 0.004743, "gnomad_OTH_maf": 0.001469, "gnomad_SAS_maf": 0.0006533, "ESP_AA_maf": 0.0004539, "ESP_EA_maf": 0.004884 }, "predictions": { "sift_prediction": "Deleterious", "pp2_hvar_prediction": "Benign", "cadd_prediction": 3.000205, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 103234828, "genomic_position_hg38": 103594381, "chromosome": "7", "annotation_flag": null, "lastmodified": "2023-06-06T16:57:54.696860", "ref_allele": "G", "alt_allele": "C", "cdna_change": "c.3651C>G", "protein_change": "p.Ile1217Met", "transcript_id": null, "dbsnp_id": "NA", "variant_effect": null }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI1071" } ], "links": { "self": 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