Variant List
This API endpoint handles listing (/variants) and retrieval (/variants/<ID>/) of genetic variants from the database
GET /api/genes/NR5A1/variants/?format=api
{ "data": [ { "type": "SmallVariant", "id": "861", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": 4.114e-06, "gnomad_AFR_maf": 0.0, "gnomad_AMR_maf": 0.0, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 5.583e-05, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 0.0, "gnomad_OTH_maf": 0.0, "gnomad_SAS_maf": 0.0, "ESP_AA_maf": 0.0, "ESP_EA_maf": 0.0001238 }, "predictions": { "sift_prediction": "Deleterious", "pp2_hvar_prediction": "Possibly Damaging", "cadd_prediction": 4.061927, "mutationtaster_prediction": "Disease causing" }, "status": "CU", "genomic_position_hg19": 127262988, "genomic_position_hg38": 124500709, "chromosome": "9", "annotation_flag": "automatically_attributed", "lastmodified": "2023-06-06T16:57:45.659647", "ref_allele": "C", "alt_allele": "T", "cdna_change": "c.251G>A", "protein_change": "p.Arg84His", "transcript_id": "NM_004959.4", "dbsnp_id": "rs375469069", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI400" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/861/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/861/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/861/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/861/gene/?format=api" }, "data": { "type": "Gene", "id": "NR5A1" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/861/?format=api" } }, { "type": "SmallVariant", "id": "863", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": null, "gnomad_AFR_maf": null, "gnomad_AMR_maf": null, "gnomad_ASJ_maf": null, "gnomad_EAS_maf": null, "gnomad_FIN_maf": null, "gnomad_NFE_maf": null, "gnomad_OTH_maf": null, "gnomad_SAS_maf": null, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": null, "pp2_hvar_prediction": null, "cadd_prediction": 2.175203, "mutationtaster_prediction": "Disease causing" }, "status": "CU", "genomic_position_hg19": 127253381, "genomic_position_hg38": 124491102, "chromosome": "9", "annotation_flag": "manually_attributed", "lastmodified": "2023-06-06T16:57:45.672607", "ref_allele": "ACTT", "alt_allele": "A", "cdna_change": "c.1114_1116del", "protein_change": "p.Lys372del", "transcript_id": "NM_004959.5", "dbsnp_id": "NA", "variant_effect": "deletion" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI401" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/863/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/863/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/863/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/863/gene/?format=api" }, "data": { "type": "Gene", "id": "NR5A1" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/863/?format=api" } }, { "type": "SmallVariant", "id": "1197", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": null, "gnomad_AFR_maf": null, "gnomad_AMR_maf": null, "gnomad_ASJ_maf": null, "gnomad_EAS_maf": null, "gnomad_FIN_maf": null, "gnomad_NFE_maf": null, "gnomad_OTH_maf": null, "gnomad_SAS_maf": null, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Deleterious", "pp2_hvar_prediction": "Benign", "cadd_prediction": 2.879763, "mutationtaster_prediction": "Disease causing" }, "status": "CU", "genomic_position_hg19": 127265617, "genomic_position_hg38": 124503338, "chromosome": "9", "annotation_flag": "automatically_attributed", "lastmodified": "2023-06-06T16:57:47.717310", "ref_allele": "C", "alt_allele": "G", "cdna_change": "c.58G>C", "protein_change": "p.Val20Leu", "transcript_id": "NM_004959.4", "dbsnp_id": "NA", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI572" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/1197/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/1197/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/1197/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/1197/gene/?format=api" }, "data": { "type": "Gene", "id": "NR5A1" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/1197/?format=api" } }, { "type": "SmallVariant", "id": "1199", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": null, "gnomad_AFR_maf": null, "gnomad_AMR_maf": null, "gnomad_ASJ_maf": null, "gnomad_EAS_maf": null, "gnomad_FIN_maf": null, "gnomad_NFE_maf": null, "gnomad_OTH_maf": null, "gnomad_SAS_maf": null, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": null, "pp2_hvar_prediction": null, "cadd_prediction": 4.402597, "mutationtaster_prediction": "Disease causing" }, "status": "CU", "genomic_position_hg19": 127265604, "genomic_position_hg38": 124503325, "chromosome": "9", "annotation_flag": "manually_attributed", "lastmodified": "2023-06-06T16:57:47.728989", "ref_allele": "TG", "alt_allele": "T", "cdna_change": "c.70delC", "protein_change": "p.His24ThrfsTer51", "transcript_id": "NM_004959", "dbsnp_id": "NA", "variant_effect": "frameshift" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI573" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/1199/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/1199/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/1199/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/1199/gene/?format=api" }, "data": { "type": "Gene", "id": "NR5A1" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/1199/?format=api" } }, { "type": "SmallVariant", "id": "1206", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": null, "gnomad_AFR_maf": null, "gnomad_AMR_maf": null, "gnomad_ASJ_maf": null, "gnomad_EAS_maf": null, "gnomad_FIN_maf": null, "gnomad_NFE_maf": null, "gnomad_OTH_maf": null, "gnomad_SAS_maf": null, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Deleterious", "pp2_hvar_prediction": "Damaging", "cadd_prediction": 4.006085, "mutationtaster_prediction": "Disease causing" }, "status": "CU", "genomic_position_hg19": 127262971, "genomic_position_hg38": 124500692, "chromosome": "9", "annotation_flag": "automatically_attributed", "lastmodified": "2023-06-06T16:57:47.770633", "ref_allele": "C", "alt_allele": "G", "cdna_change": "c.268G>C", "protein_change": "p.Gly90Arg", "transcript_id": "NM_004959.4", "dbsnp_id": "NA", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI574" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/1206/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/1206/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/1206/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/1206/gene/?format=api" }, "data": { "type": "Gene", "id": "NR5A1" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/1206/?format=api" } }, { "type": "SmallVariant", "id": "1214", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": 0.0, "gnomad_AFR_maf": 0.0, "gnomad_AMR_maf": 0.0, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 0.0, "gnomad_OTH_maf": 0.0, "gnomad_SAS_maf": 0.0, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": null, "pp2_hvar_prediction": null, "cadd_prediction": 3.070477, "mutationtaster_prediction": "Disease causing" }, "status": "CU", "genomic_position_hg19": 127262624, "genomic_position_hg38": 124500345, "chromosome": "9", "annotation_flag": "manually_attributed", "lastmodified": "2023-06-06T16:57:47.819059", "ref_allele": "T", "alt_allele": "TG", "cdna_change": "c.614_615insC", "protein_change": "p.Gln206ThrfsTer20", "transcript_id": "NM_004959", "dbsnp_id": "rs1234904066", "variant_effect": "frameshift" }, "relationships": { "in_combination": { "meta": { "count": 2 }, "data": [ { "type": "Combination", "id": "OLI575" }, { "type": "Combination", "id": "OLI668" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/1214/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/1214/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/1214/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/1214/gene/?format=api" }, "data": { "type": "Gene", "id": "NR5A1" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/1214/?format=api" } }, { "type": "SmallVariant", "id": "1442", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": null, "gnomad_AFR_maf": null, "gnomad_AMR_maf": null, "gnomad_ASJ_maf": null, "gnomad_EAS_maf": null, "gnomad_FIN_maf": null, "gnomad_NFE_maf": null, "gnomad_OTH_maf": null, "gnomad_SAS_maf": null, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Deleterious", "pp2_hvar_prediction": "Damaging", "cadd_prediction": 3.812786, "mutationtaster_prediction": "Disease causing" }, "status": "CU", "genomic_position_hg19": 127265587, "genomic_position_hg38": 124503308, "chromosome": "9", "annotation_flag": "automatically_attributed", "lastmodified": "2023-06-06T16:57:49.172393", "ref_allele": "A", "alt_allele": "T", "cdna_change": "c.88T>A", "protein_change": "p.Cys30Ser", "transcript_id": "NM_004959.4", "dbsnp_id": "rs1564153753", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI667" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/1442/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/1442/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/1442/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/1442/gene/?format=api" }, "data": { "type": "Gene", "id": "NR5A1" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/1442/?format=api" } }, { "type": "SmallVariant", "id": "1445", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": null, "gnomad_AFR_maf": null, "gnomad_AMR_maf": null, "gnomad_ASJ_maf": null, "gnomad_EAS_maf": null, "gnomad_FIN_maf": null, "gnomad_NFE_maf": null, "gnomad_OTH_maf": null, "gnomad_SAS_maf": null, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": null, "pp2_hvar_prediction": null, "cadd_prediction": 2.382433, "mutationtaster_prediction": "Disease causing" }, "status": "CU", "genomic_position_hg19": 127245237, "genomic_position_hg38": 124482958, "chromosome": "9", "annotation_flag": "manually_attributed", "lastmodified": "2023-06-06T16:57:49.192660", "ref_allele": "TCTC", "alt_allele": "T", "cdna_change": "c.1183_1185delGAG", "protein_change": "p.Glu395del", "transcript_id": "NM_004959", "dbsnp_id": "NA", "variant_effect": "deletion" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI669" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/1445/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/1445/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/1445/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/1445/gene/?format=api" }, "data": { "type": "Gene", "id": "NR5A1" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/1445/?format=api" } }, { "type": "SmallVariant", "id": "1697", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": null, "gnomad_AFR_maf": null, "gnomad_AMR_maf": null, "gnomad_ASJ_maf": null, "gnomad_EAS_maf": null, "gnomad_FIN_maf": null, "gnomad_NFE_maf": null, "gnomad_OTH_maf": null, "gnomad_SAS_maf": null, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Deleterious", "pp2_hvar_prediction": "Damaging", "cadd_prediction": 3.99641, "mutationtaster_prediction": "Disease causing" }, "status": "CU", "genomic_position_hg19": 127255362, "genomic_position_hg38": 124493083, "chromosome": "9", "annotation_flag": "automatically_attributed", "lastmodified": "2023-06-06T16:57:50.763811", "ref_allele": "G", "alt_allele": "A", "cdna_change": "c.937C>T", "protein_change": "p.Arg313Cys", "transcript_id": "NM_004959.4", "dbsnp_id": "rs1057517779", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI766" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/1697/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/1697/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/1697/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/1697/gene/?format=api" }, "data": { "type": "Gene", "id": "NR5A1" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/1697/?format=api" } }, { "type": "SmallVariant", "id": "2169", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": null, "gnomad_AFR_maf": null, "gnomad_AMR_maf": null, "gnomad_ASJ_maf": null, "gnomad_EAS_maf": null, "gnomad_FIN_maf": null, "gnomad_NFE_maf": null, "gnomad_OTH_maf": null, "gnomad_SAS_maf": null, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Deleterious", "pp2_hvar_prediction": "Possibly Damaging", "cadd_prediction": 3.867825, "mutationtaster_prediction": "Disease causing" }, "status": "CU", "genomic_position_hg19": 127265589, "genomic_position_hg38": 124503310, "chromosome": "9", "annotation_flag": null, "lastmodified": "2023-06-06T16:57:53.640286", "ref_allele": "G", "alt_allele": "T", "cdna_change": "c.86C>A", "protein_change": "p.Thr29Lys", "transcript_id": "NM_004959.5", "dbsnp_id": "NA", "variant_effect": null }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI998" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/2169/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/2169/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/2169/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/2169/gene/?format=api" }, "data": { "type": "Gene", "id": "NR5A1" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/2169/?format=api" } }, { "type": "SmallVariant", "id": "2269", "attributes": { 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