Variant List
This API endpoint handles listing (/variants) and retrieval (/variants/<ID>/) of genetic variants from the database
GET /api/genes/FUS/variants/?format=api
{ "data": [ { "type": "SmallVariant", "id": "536", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": 0.0001962, "gnomad_AFR_maf": 0.0, "gnomad_AMR_maf": 0.0, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.0007877, "gnomad_NFE_maf": 0.0002742, "gnomad_OTH_maf": 0.0001647, "gnomad_SAS_maf": 0.0, "ESP_AA_maf": 0.0, "ESP_EA_maf": 0.0001163 }, "predictions": { "sift_prediction": "Deleterious", "pp2_hvar_prediction": "Benign", "cadd_prediction": 2.537288, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 31202343, "genomic_position_hg38": 31191022, "chromosome": "16", "annotation_flag": "automatically_attributed", "lastmodified": "2023-06-06T16:57:43.670855", "ref_allele": "C", "alt_allele": "T", "cdna_change": "c.1453C>T", "protein_change": "p.Arg485Trp", "transcript_id": "NM_004960.3", "dbsnp_id": "rs201772423", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI276" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/536/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/536/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/536/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/536/gene/?format=api" }, "data": { "type": "Gene", "id": "FUS" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/536/?format=api" } }, { "type": "SmallVariant", "id": "539", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": 3.977e-06, "gnomad_AFR_maf": 0.0, "gnomad_AMR_maf": 0.0, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 8.794e-06, "gnomad_OTH_maf": 0.0, "gnomad_SAS_maf": 0.0, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Deleterious", "pp2_hvar_prediction": "Benign", "cadd_prediction": 2.473452, "mutationtaster_prediction": "Disease causing" }, "status": "CU", "genomic_position_hg19": 31202752, "genomic_position_hg38": 31191431, "chromosome": "16", "annotation_flag": "automatically_attributed", "lastmodified": "2023-06-06T16:57:43.688183", "ref_allele": "C", "alt_allele": "T", "cdna_change": "c.1574C>T", "protein_change": "p.Pro525Leu", "transcript_id": "NM_004960.3", "dbsnp_id": "rs886041390", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 4 }, "data": [ { "type": "Combination", "id": "OLI1306" }, { "type": "Combination", "id": "OLI1307" }, { "type": "Combination", "id": "OLI278" }, { "type": "Combination", "id": "OLI945" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/539/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/539/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/539/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/539/gene/?format=api" }, "data": { "type": "Gene", "id": "FUS" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/539/?format=api" } }, { "type": "SmallVariant", "id": "1373", "attributes": { "frequencies": { "KGP_genomes_maf": 0.0044, "KGP_genomes_AFR_maf": 0.0008, "KGP_genomes_AMR_maf": 0.0058, "KGP_genomes_EAS_maf": 0.0, "KGP_genomes_EUR_maf": 0.0129, "KGP_genomes_SAS_maf": 0.0041, "gnomad_maf": 0.006691, "gnomad_AFR_maf": 0.001047, "gnomad_AMR_maf": 0.006744, "gnomad_ASJ_maf": 0.01459, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.001155, "gnomad_NFE_maf": 0.007983, "gnomad_OTH_maf": 0.00766, "gnomad_SAS_maf": 0.009967, "ESP_AA_maf": 0.001593, "ESP_EA_maf": 0.005814 }, "predictions": { "sift_prediction": null, "pp2_hvar_prediction": null, "cadd_prediction": 1.294523, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 31202800, "genomic_position_hg38": 31191479, "chromosome": "16", "annotation_flag": "manually_attributed", "lastmodified": "2023-06-06T16:57:48.711211", "ref_allele": "G", "alt_allele": "A", "cdna_change": "c.41G>A", "protein_change": null, "transcript_id": "ENST00000254108.7", "dbsnp_id": "rs80301724", "variant_effect": "unknown" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI627" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/1373/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/1373/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/1373/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/1373/gene/?format=api" }, "data": { "type": "Gene", "id": "FUS" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/1373/?format=api" } }, { "type": "SmallVariant", "id": "1374", "attributes": { "frequencies": { "KGP_genomes_maf": 0.0044, "KGP_genomes_AFR_maf": 0.0015, "KGP_genomes_AMR_maf": 0.0086, "KGP_genomes_EAS_maf": 0.0, "KGP_genomes_EUR_maf": 0.0139, "KGP_genomes_SAS_maf": 0.0, "gnomad_maf": 0.01041, "gnomad_AFR_maf": 0.00203, "gnomad_AMR_maf": 0.005234, "gnomad_ASJ_maf": 0.009129, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.02543, "gnomad_NFE_maf": 0.01427, "gnomad_OTH_maf": 0.01744, "gnomad_SAS_maf": 0.001045, "ESP_AA_maf": 0.001593, "ESP_EA_maf": 0.01384 }, "predictions": { "sift_prediction": null, "pp2_hvar_prediction": null, "cadd_prediction": -0.128483, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 31200415, "genomic_position_hg38": 31189094, "chromosome": "16", "annotation_flag": "manually_attributed", "lastmodified": "2023-06-06T16:57:48.717145", "ref_allele": "C", "alt_allele": "T", "cdna_change": "c.833-29C>T", "protein_change": null, "transcript_id": "ENST00000254108.7", "dbsnp_id": "rs72550862", "variant_effect": "unknown" }, "relationships": { "in_combination": { "meta": { "count": 2 }, "data": [ { "type": "Combination", "id": "OLI628" }, { "type": "Combination", "id": "OLI629" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/1374/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/1374/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/1374/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/1374/gene/?format=api" }, "data": { "type": "Gene", "id": "FUS" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/1374/?format=api" } }, { "type": "SmallVariant", "id": "1389", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": 0.0, "gnomad_AFR_maf": 0.0, "gnomad_AMR_maf": 0.0, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 0.0, "gnomad_OTH_maf": 0.0, "gnomad_SAS_maf": 0.0, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": null, "pp2_hvar_prediction": null, "cadd_prediction": 0.440795, "mutationtaster_prediction": "Disease causing" }, "status": "CU", "genomic_position_hg19": 31202818, "genomic_position_hg38": 31191497, "chromosome": "16", "annotation_flag": "automatically_attributed_and_verified", "lastmodified": "2023-06-06T16:57:48.813573", "ref_allele": "G", "alt_allele": "A", "cdna_change": "c.*59G>A", "protein_change": "None", "transcript_id": "NM_004960.3", "dbsnp_id": "rs959552367", "variant_effect": "3'-UTR variant" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI642" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/1389/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/1389/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/1389/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/1389/gene/?format=api" }, "data": { "type": "Gene", "id": "FUS" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/1389/?format=api" } }, { "type": "SmallVariant", "id": "1391", "attributes": { "frequencies": { "KGP_genomes_maf": 0.0014, "KGP_genomes_AFR_maf": 0.0008, "KGP_genomes_AMR_maf": 0.0, "KGP_genomes_EAS_maf": 0.0, "KGP_genomes_EUR_maf": 0.006, "KGP_genomes_SAS_maf": 0.0, "gnomad_maf": 0.00203, "gnomad_AFR_maf": 0.0004921, "gnomad_AMR_maf": 0.001109, "gnomad_ASJ_maf": 0.000247, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.002041, "gnomad_NFE_maf": 0.004118, "gnomad_OTH_maf": 0.003252, "gnomad_SAS_maf": 0.0004021, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": null, "pp2_hvar_prediction": null, "cadd_prediction": -0.260023, "mutationtaster_prediction": null }, "status": "CU", "genomic_position_hg19": 31204757, "genomic_position_hg38": 31193436, "chromosome": "16", "annotation_flag": "manually_corrected", "lastmodified": "2023-06-06T16:57:48.827251", "ref_allele": "T", "alt_allele": "C", "cdna_change": "c.*1998T>C", "protein_change": "None", "transcript_id": "NM_001170937.1", "dbsnp_id": "rs182437252", "variant_effect": "upstream gene variant" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI643" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/1391/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/1391/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/1391/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/1391/gene/?format=api" }, "data": { "type": "Gene", "id": "FUS" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/1391/?format=api" } }, { "type": "SmallVariant", "id": "1432", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": 3.979e-06, "gnomad_AFR_maf": 0.0, "gnomad_AMR_maf": 0.0, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 8.799e-06, "gnomad_OTH_maf": 0.0, "gnomad_SAS_maf": 0.0, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Deleterious", "pp2_hvar_prediction": "Benign", "cadd_prediction": 2.817357, "mutationtaster_prediction": "Disease causing" }, "status": "CU", "genomic_position_hg19": 31202740, "genomic_position_hg38": 31191419, "chromosome": "16", "annotation_flag": "manually_attributed", "lastmodified": "2023-06-06T16:57:49.104943", "ref_allele": "G", "alt_allele": "A", "cdna_change": "c.1550G>A", "protein_change": "p.Arg517His", "transcript_id": "NM_001170937.1", "dbsnp_id": "rs121909671", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI660" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/1432/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/1432/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/1432/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/1432/gene/?format=api" }, "data": { "type": "Gene", "id": "FUS" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/1432/?format=api" } }, { "type": "SmallVariant", "id": "1708", "attributes": { "frequencies": { "KGP_genomes_maf": 0.002, "KGP_genomes_AFR_maf": 0.0, "KGP_genomes_AMR_maf": 0.0058, "KGP_genomes_EAS_maf": 0.0, "KGP_genomes_EUR_maf": 0.006, "KGP_genomes_SAS_maf": 0.0, "gnomad_maf": 0.0005328, "gnomad_AFR_maf": 6.152e-05, "gnomad_AMR_maf": 0.003064, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 0.000167, "gnomad_OTH_maf": 0.001303, "gnomad_SAS_maf": 0.0, "ESP_AA_maf": 0.0, "ESP_EA_maf": 0.0001163 }, "predictions": { "sift_prediction": "Tolerated", "pp2_hvar_prediction": "Benign", "cadd_prediction": 1.985045, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 31195598, "genomic_position_hg38": 31184277, "chromosome": "16", "annotation_flag": "automatically_attributed", "lastmodified": "2023-06-06T16:57:50.833161", "ref_allele": "G", "alt_allele": "A", "cdna_change": null, "protein_change": "p.Ser135Asn", "transcript_id": null, "dbsnp_id": "rs61732970", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI775" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/1708/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/1708/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/1708/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/1708/gene/?format=api" }, "data": { "type": "Gene", "id": "FUS" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/1708/?format=api" } }, { "type": "SmallVariant", "id": "1711", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": 1.196e-05, "gnomad_AFR_maf": 6.179e-05, "gnomad_AMR_maf": 0.0, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 1.765e-05, "gnomad_OTH_maf": 0.0, "gnomad_SAS_maf": 0.0, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Deleterious", "pp2_hvar_prediction": "Benign", "cadd_prediction": 4.311881, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 31199651, "genomic_position_hg38": 31188330, "chromosome": "16", "annotation_flag": "automatically_attributed", "lastmodified": "2023-06-06T16:57:50.851855", "ref_allele": "C", "alt_allele": "T", "cdna_change": null, "protein_change": "p.Arg269Trp", "transcript_id": null, "dbsnp_id": "rs755018172", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI776" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/1711/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/1711/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/1711/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/1711/gene/?format=api" }, "data": { "type": "Gene", "id": "FUS" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/1711/?format=api" } }, { "type": "SmallVariant", "id": "1806", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": 3.61e-05, "gnomad_AFR_maf": 6.503e-05, "gnomad_AMR_maf": 0.0001158, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 0.0, "gnomad_OTH_maf": 0.0, "gnomad_SAS_maf": 0.0001308, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Tolerated", "pp2_hvar_prediction": "Possibly Damaging", "cadd_prediction": 3.46859, "mutationtaster_prediction": "Disease causing" }, "status": "CU", "genomic_position_hg19": 31202361, "genomic_position_hg38": 31191040, "chromosome": "16", "annotation_flag": "automatically_attributed", "lastmodified": "2023-06-06T16:57:51.411265", "ref_allele": "C", "alt_allele": "T", "cdna_change": "c.1471C>T", "protein_change": "p.Arg491Cys", "transcript_id": "NM_004960.3", "dbsnp_id": "rs753458243", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI822" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/1806/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/1806/combinations/?format=api" } }, "gene_name": { "links": { "self": 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