Variant List
This API endpoint handles listing (/variants) and retrieval (/variants/<ID>/) of genetic variants from the database
GET /api/genes/FLRT3/variants/?format=api
{ "data": [ { "type": "SmallVariant", "id": "805", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": null, "gnomad_AFR_maf": null, "gnomad_AMR_maf": null, "gnomad_ASJ_maf": null, "gnomad_EAS_maf": null, "gnomad_FIN_maf": null, "gnomad_NFE_maf": null, "gnomad_OTH_maf": null, "gnomad_SAS_maf": null, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Deleterious", "pp2_hvar_prediction": "Damaging", "cadd_prediction": 4.134835, "mutationtaster_prediction": null }, "status": "CU", "genomic_position_hg19": 14307863, "genomic_position_hg38": 14327217, "chromosome": "20", "annotation_flag": "automatically_attributed", "lastmodified": "2023-06-06T16:57:45.316141", "ref_allele": "T", "alt_allele": "C", "cdna_change": "c.290A>G", "protein_change": "p.Glu97Gly", "transcript_id": "NM_013281.3", "dbsnp_id": "rs398124651", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI367" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/805/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/805/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/805/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/805/gene/?format=api" }, "data": { "type": "Gene", "id": "FLRT3" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/805/?format=api" } }, { "type": "SmallVariant", "id": "806", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": null, "gnomad_AFR_maf": null, "gnomad_AMR_maf": null, "gnomad_ASJ_maf": null, "gnomad_EAS_maf": null, "gnomad_FIN_maf": null, "gnomad_NFE_maf": null, "gnomad_OTH_maf": null, "gnomad_SAS_maf": null, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Deleterious", "pp2_hvar_prediction": "Damaging", "cadd_prediction": 4.009635, "mutationtaster_prediction": "Disease causing" }, "status": "CU", "genomic_position_hg19": 14307722, "genomic_position_hg38": 14327076, "chromosome": "20", "annotation_flag": "automatically_attributed", "lastmodified": "2023-06-06T16:57:45.322539", "ref_allele": "C", "alt_allele": "A", "cdna_change": "c.431G>T", "protein_change": "p.Ser144Ile", "transcript_id": "NM_013281.3", "dbsnp_id": "rs398124652", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI367" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/806/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/806/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/806/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/806/gene/?format=api" }, "data": { "type": "Gene", "id": "FLRT3" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/806/?format=api" } }, { "type": "SmallVariant", "id": "815", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": 2.791e-05, "gnomad_AFR_maf": 0.0, "gnomad_AMR_maf": 0.0, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 6.182e-05, "gnomad_OTH_maf": 0.0, "gnomad_SAS_maf": 0.0, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Tolerated", "pp2_hvar_prediction": "Benign", "cadd_prediction": 2.177358, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 14307948, "genomic_position_hg38": 14327302, "chromosome": "20", "annotation_flag": "automatically_attributed", "lastmodified": "2023-06-06T16:57:45.379834", "ref_allele": "G", "alt_allele": "T", "cdna_change": "c.205C>A", "protein_change": "p.Gln69Lys", "transcript_id": "NM_013281.3", "dbsnp_id": "rs398124653", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI372" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/815/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/815/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/815/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/815/gene/?format=api" }, "data": { "type": "Gene", "id": "FLRT3" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/815/?format=api" } }, { "type": "SmallVariant", "id": "2682", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": 1.594e-05, "gnomad_AFR_maf": 0.0, "gnomad_AMR_maf": 0.0, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 1.764e-05, "gnomad_OTH_maf": 0.0, "gnomad_SAS_maf": 6.534e-05, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Tolerated", "pp2_hvar_prediction": "Damaging", "cadd_prediction": 3.50927, "mutationtaster_prediction": null }, "status": "CU", "genomic_position_hg19": 14306288, "genomic_position_hg38": 14325642, "chromosome": "20", "annotation_flag": null, "lastmodified": "2023-06-06T16:57:56.605619", "ref_allele": "A", "alt_allele": "G", "cdna_change": "c.1865T>C", "protein_change": "p.Leu622Pro", "transcript_id": "NM_198391.3", "dbsnp_id": "NA", "variant_effect": null }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI1271" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/2682/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/2682/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/2682/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/2682/gene/?format=api" }, "data": { "type": "Gene", "id": "FLRT3" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/2682/?format=api" } }, { "type": "SmallVariant", "id": "2695", "attributes": { "frequencies": { "KGP_genomes_maf": 0.0078, "KGP_genomes_AFR_maf": 0.0015, "KGP_genomes_AMR_maf": 0.0115, "KGP_genomes_EAS_maf": 0.0, "KGP_genomes_EUR_maf": 0.0288, "KGP_genomes_SAS_maf": 0.0, "gnomad_maf": 0.01802, "gnomad_AFR_maf": 0.003508, "gnomad_AMR_maf": 0.007264, "gnomad_ASJ_maf": 0.002683, "gnomad_EAS_maf": 5.443e-05, "gnomad_FIN_maf": 0.02744, "gnomad_NFE_maf": 0.03073, "gnomad_OTH_maf": 0.01637, "gnomad_SAS_maf": 0.000294, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Deleterious", "pp2_hvar_prediction": "Benign", "cadd_prediction": 2.701056, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 14307019, "genomic_position_hg38": 14326373, "chromosome": "20", "annotation_flag": null, "lastmodified": "2023-06-06T16:57:56.681185", "ref_allele": "T", "alt_allele": "G", "cdna_change": "c.1134A>C", "protein_change": "p.Gln378His", "transcript_id": "NM_198391.3", "dbsnp_id": "NA", "variant_effect": null }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI1279" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/2695/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/2695/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/2695/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/2695/gene/?format=api" }, "data": { "type": "Gene", "id": "FLRT3" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/2695/?format=api" } }, { "type": "SmallVariant", "id": "2730", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": null, "gnomad_AFR_maf": null, "gnomad_AMR_maf": null, "gnomad_ASJ_maf": null, "gnomad_EAS_maf": null, "gnomad_FIN_maf": null, "gnomad_NFE_maf": null, "gnomad_OTH_maf": null, "gnomad_SAS_maf": null, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Tolerated", "pp2_hvar_prediction": "Benign", "cadd_prediction": 2.609827, "mutationtaster_prediction": null }, "status": "CU", "genomic_position_hg19": 14306294, "genomic_position_hg38": 14325648, "chromosome": "20", "annotation_flag": null, "lastmodified": "2023-06-06T16:57:56.895506", "ref_allele": "A", "alt_allele": "C", "cdna_change": "c.1859T>G", "protein_change": "p.Met620Arg", "transcript_id": "NM_198391.3", "dbsnp_id": "NA", "variant_effect": null }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI1300" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/2730/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/2730/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/2730/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/2730/gene/?format=api" }, "data": { "type": "Gene", "id": "FLRT3" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/2730/?format=api" } }, { "type": "SmallVariant", "id": "3194", "attributes": { "frequencies": { "KGP_genomes_maf": 0.0002, "KGP_genomes_AFR_maf": 0.0008, "KGP_genomes_AMR_maf": 0.0, "KGP_genomes_EAS_maf": 0.0, "KGP_genomes_EUR_maf": 0.0, "KGP_genomes_SAS_maf": 0.0, "gnomad_maf": 0.0001117, "gnomad_AFR_maf": 0.0006774, "gnomad_AMR_maf": 0.0003766, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 2.648e-05, "gnomad_OTH_maf": 0.0001638, "gnomad_SAS_maf": 0.0, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Deleterious", "pp2_hvar_prediction": "Damaging", "cadd_prediction": 2.576699, "mutationtaster_prediction": null }, "status": "CU", "genomic_position_hg19": 14307828, "genomic_position_hg38": 14327182, "chromosome": "20", "annotation_flag": null, "lastmodified": "2023-06-06T16:57:59.644447", "ref_allele": "A", "alt_allele": "C", "cdna_change": "c.325T>G", "protein_change": "p.Leu109Val", "transcript_id": "NM_013281", "dbsnp_id": "NA", "variant_effect": null }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI1522" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/3194/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/3194/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/3194/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/3194/gene/?format=api" }, "data": { "type": "Gene", "id": "FLRT3" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/3194/?format=api" } }, { "type": "SmallVariant", "id": "3225", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": null, "gnomad_AFR_maf": null, "gnomad_AMR_maf": null, "gnomad_ASJ_maf": null, "gnomad_EAS_maf": null, "gnomad_FIN_maf": null, "gnomad_NFE_maf": null, "gnomad_OTH_maf": null, "gnomad_SAS_maf": null, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Tolerated", "pp2_hvar_prediction": "Benign", "cadd_prediction": 2.831101, "mutationtaster_prediction": "Disease causing" }, "status": "CU", "genomic_position_hg19": 14308001, "genomic_position_hg38": 14327355, "chromosome": "20", "annotation_flag": null, "lastmodified": "2023-06-06T16:57:59.831292", "ref_allele": "G", "alt_allele": "A", "cdna_change": "c.152C>T", "protein_change": "p.Ser51Phe", "transcript_id": "NM_198391.3", "dbsnp_id": "NA", "variant_effect": null }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI1535" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/3225/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/3225/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/3225/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/3225/gene/?format=api" }, "data": { "type": "Gene", "id": "FLRT3" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/3225/?format=api" } }, { "type": "SmallVariant", "id": "3234", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": null, "gnomad_AFR_maf": null, "gnomad_AMR_maf": null, "gnomad_ASJ_maf": null, "gnomad_EAS_maf": null, "gnomad_FIN_maf": null, "gnomad_NFE_maf": null, "gnomad_OTH_maf": null, "gnomad_SAS_maf": null, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Tolerated", "pp2_hvar_prediction": "Benign", "cadd_prediction": 1.987648, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 14308065, "genomic_position_hg38": 14327419, "chromosome": "20", "annotation_flag": null, "lastmodified": "2023-06-06T16:57:59.887632", "ref_allele": "A", "alt_allele": "G", "cdna_change": "c.88T>C", "protein_change": "p.Ser30Pro", "transcript_id": "NM_013281", "dbsnp_id": "NA", "variant_effect": null }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI1538" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/3234/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/3234/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/3234/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/3234/gene/?format=api" }, "data": { "type": "Gene", "id": "FLRT3" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/3234/?format=api" } }, { "type": "SmallVariant", "id": "3258", "attributes": { "frequencies": { "KGP_genomes_maf": 0.0004, "KGP_genomes_AFR_maf": 0.0015, "KGP_genomes_AMR_maf": 0.0, "KGP_genomes_EAS_maf": 0.0, "KGP_genomes_EUR_maf": 0.0, "KGP_genomes_SAS_maf": 0.0, "gnomad_maf": 0.0001835, "gnomad_AFR_maf": 0.002092, "gnomad_AMR_maf": 0.0003185, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 8.838e-06, "gnomad_OTH_maf": 0.0, "gnomad_SAS_maf": 0.0, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Tolerated", "pp2_hvar_prediction": "Benign", "cadd_prediction": 2.646621, "mutationtaster_prediction": null }, "status": "CU", "genomic_position_hg19": 14307203, "genomic_position_hg38": 14326557, "chromosome": "20", "annotation_flag": null, "lastmodified": "2023-06-06T16:58:00.032292", "ref_allele": "C", "alt_allele": "T", "cdna_change": "c.950G>A", "protein_change": "p.Arg317His", "transcript_id": "NM_013281", "dbsnp_id": "NA", "variant_effect": null }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI1550" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/3258/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/3258/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/3258/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/3258/gene/?format=api" }, "data": { "type": "Gene", "id": "FLRT3" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/3258/?format=api" } }, { "type": "SmallVariant", "id": "3474", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": 1.594e-05, "gnomad_AFR_maf": 0.0, 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