Variant List
This API endpoint handles listing (/variants) and retrieval (/variants/<ID>/) of genetic variants from the database
GET /api/genes/FAT4/variants/?format=api
{ "data": [ { "type": "SmallVariant", "id": "1507", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": null, "gnomad_AFR_maf": null, "gnomad_AMR_maf": null, "gnomad_ASJ_maf": null, "gnomad_EAS_maf": null, "gnomad_FIN_maf": null, "gnomad_NFE_maf": null, "gnomad_OTH_maf": null, "gnomad_SAS_maf": null, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Deleterious", "pp2_hvar_prediction": "Benign", "cadd_prediction": 2.601744, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 126370180, "genomic_position_hg38": 125449025, "chromosome": "4", "annotation_flag": "automatically_attributed", "lastmodified": "2023-06-06T16:57:49.581086", "ref_allele": "A", "alt_allele": "T", "cdna_change": "c.8015A>T", "protein_change": "p.Asp2672Val", "transcript_id": "NM_024582.4", "dbsnp_id": "NA", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI695" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/1507/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/1507/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/1507/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/1507/gene/?format=api" }, "data": { "type": "Gene", "id": "FAT4" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/1507/?format=api" } }, { "type": "SmallVariant", "id": "1510", "attributes": { "frequencies": { "KGP_genomes_maf": 0.0028, "KGP_genomes_AFR_maf": 0.0008, "KGP_genomes_AMR_maf": 0.0101, "KGP_genomes_EAS_maf": 0.001, "KGP_genomes_EUR_maf": 0.005, "KGP_genomes_SAS_maf": 0.0, "gnomad_maf": 0.004207, "gnomad_AFR_maf": 0.001321, "gnomad_AMR_maf": 0.006599, "gnomad_ASJ_maf": 0.0008086, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.002607, "gnomad_NFE_maf": 0.006046, "gnomad_OTH_maf": 0.006515, "gnomad_SAS_maf": 0.0004606, "ESP_AA_maf": 0.001013, "ESP_EA_maf": 0.005661 }, "predictions": { "sift_prediction": "Tolerated", "pp2_hvar_prediction": "Damaging", "cadd_prediction": 3.02566, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 126238305, "genomic_position_hg38": 125317150, "chromosome": "4", "annotation_flag": "automatically_attributed", "lastmodified": "2023-06-06T16:57:49.599044", "ref_allele": "C", "alt_allele": "A", "cdna_change": "c.739C>A", "protein_change": "p.Pro247Thr", "transcript_id": "NM_001291285.1", "dbsnp_id": "rs191329848", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI696" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/1510/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/1510/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/1510/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/1510/gene/?format=api" }, "data": { "type": "Gene", "id": "FAT4" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/1510/?format=api" } }, { "type": "SmallVariant", "id": "1511", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": 2.39e-05, "gnomad_AFR_maf": 0.0, "gnomad_AMR_maf": 0.0, "gnomad_ASJ_maf": 0.0001986, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 3.525e-05, "gnomad_OTH_maf": 0.0, "gnomad_SAS_maf": 0.0, "ESP_AA_maf": 0.0, "ESP_EA_maf": 0.0001163 }, "predictions": { "sift_prediction": "Deleterious", "pp2_hvar_prediction": "Damaging", "cadd_prediction": 3.478135, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 126336725, "genomic_position_hg38": 125415570, "chromosome": "4", "annotation_flag": "automatically_attributed", "lastmodified": "2023-06-06T16:57:49.604823", "ref_allele": "C", "alt_allele": "T", "cdna_change": "c.6607C>T", "protein_change": "p.Arg2203Trp", "transcript_id": "NM_001291285.1", "dbsnp_id": "rs374328795", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI696" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/1511/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/1511/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/1511/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/1511/gene/?format=api" }, "data": { "type": "Gene", "id": "FAT4" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/1511/?format=api" } }, { "type": "SmallVariant", "id": "1549", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": null, "gnomad_AFR_maf": null, "gnomad_AMR_maf": null, "gnomad_ASJ_maf": null, "gnomad_EAS_maf": null, "gnomad_FIN_maf": null, "gnomad_NFE_maf": null, "gnomad_OTH_maf": null, "gnomad_SAS_maf": null, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Tolerated", "pp2_hvar_prediction": "Possibly Damaging", "cadd_prediction": 3.637291, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 126384810, "genomic_position_hg38": 125463655, "chromosome": "4", "annotation_flag": "automatically_attributed", "lastmodified": "2023-06-06T16:57:49.840898", "ref_allele": "C", "alt_allele": "T", "cdna_change": "c.11893C>T", "protein_change": "p.Pro3965Ser", "transcript_id": "NM_024582.4", "dbsnp_id": "rs777164236", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI708" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/1549/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/1549/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/1549/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/1549/gene/?format=api" }, "data": { "type": "Gene", "id": "FAT4" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/1549/?format=api" } }, { "type": "SmallVariant", "id": "1556", "attributes": { "frequencies": { "KGP_genomes_maf": 0.0018, "KGP_genomes_AFR_maf": 0.0, "KGP_genomes_AMR_maf": 0.0072, "KGP_genomes_EAS_maf": 0.0, "KGP_genomes_EUR_maf": 0.004, "KGP_genomes_SAS_maf": 0.0, "gnomad_maf": 0.001816, "gnomad_AFR_maf": 6.457e-05, "gnomad_AMR_maf": 0.001159, "gnomad_ASJ_maf": 0.01221, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 4.643e-05, "gnomad_NFE_maf": 0.001422, "gnomad_OTH_maf": 0.001652, "gnomad_SAS_maf": 0.003824, "ESP_AA_maf": 0.0, "ESP_EA_maf": 0.001457 }, "predictions": { "sift_prediction": "Tolerated", "pp2_hvar_prediction": "Damaging", "cadd_prediction": 2.448715, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 126240968, "genomic_position_hg38": 125319813, "chromosome": "4", "annotation_flag": "automatically_attributed", "lastmodified": "2023-06-06T16:57:49.884884", "ref_allele": "A", "alt_allele": "T", "cdna_change": "c.3402A>T", "protein_change": "p.Glu1134Asp", "transcript_id": "NM_001291285.1", "dbsnp_id": "rs144768563", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI711" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/1556/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/1556/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/1556/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/1556/gene/?format=api" }, "data": { "type": "Gene", "id": "FAT4" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/1556/?format=api" } }, { "type": "SmallVariant", "id": "1558", "attributes": { "frequencies": { "KGP_genomes_maf": 0.0004, "KGP_genomes_AFR_maf": 0.0, "KGP_genomes_AMR_maf": 0.0014, "KGP_genomes_EAS_maf": 0.0, "KGP_genomes_EUR_maf": 0.001, "KGP_genomes_SAS_maf": 0.0, "gnomad_maf": 0.0004566, "gnomad_AFR_maf": 0.0, "gnomad_AMR_maf": 0.0002608, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 0.0009173, "gnomad_OTH_maf": 0.0003285, "gnomad_SAS_maf": 0.0, "ESP_AA_maf": 0.000227, "ESP_EA_maf": 0.001047 }, "predictions": { "sift_prediction": "Deleterious", "pp2_hvar_prediction": "Damaging", "cadd_prediction": 3.925547, "mutationtaster_prediction": "Disease causing" }, "status": "CU", "genomic_position_hg19": 126329821, "genomic_position_hg38": 125408666, "chromosome": "4", "annotation_flag": "automatically_attributed", "lastmodified": "2023-06-06T16:57:49.897306", "ref_allele": "A", "alt_allele": "G", "cdna_change": "c.5792A>G", "protein_change": "p.Tyr1931Cys", "transcript_id": "NM_001291285.1", "dbsnp_id": "rs139716832", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI712" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/1558/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/1558/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/1558/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/1558/gene/?format=api" }, "data": { "type": "Gene", "id": "FAT4" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/1558/?format=api" } }, { "type": "SmallVariant", "id": "1559", "attributes": { "frequencies": { "KGP_genomes_maf": 0.001, "KGP_genomes_AFR_maf": 0.0, "KGP_genomes_AMR_maf": 0.0014, "KGP_genomes_EAS_maf": 0.0, "KGP_genomes_EUR_maf": 0.004, "KGP_genomes_SAS_maf": 0.0, "gnomad_maf": 0.002005, "gnomad_AFR_maf": 0.0004317, "gnomad_AMR_maf": 0.00107, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.0008315, "gnomad_NFE_maf": 0.003646, "gnomad_OTH_maf": 0.001144, "gnomad_SAS_maf": 0.0006859, "ESP_AA_maf": 0.0006809, "ESP_EA_maf": 0.004884 }, "predictions": { "sift_prediction": "Tolerated", "pp2_hvar_prediction": "Benign", "cadd_prediction": 1.400856, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 126372555, "genomic_position_hg38": 125451400, "chromosome": "4", "annotation_flag": "automatically_attributed", "lastmodified": "2023-06-06T16:57:49.903719", "ref_allele": "A", "alt_allele": "G", "cdna_change": "c.10384A>G", "protein_change": "p.Ile3462Val", "transcript_id": "NM_024582.4", "dbsnp_id": "rs147872710", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI712" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/1559/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/1559/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/1559/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/1559/gene/?format=api" }, "data": { "type": "Gene", "id": "FAT4" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/1559/?format=api" } }, { "type": "SmallVariant", "id": "1626", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": 4.01e-05, "gnomad_AFR_maf": 0.0, "gnomad_AMR_maf": 0.0, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 4.644e-05, "gnomad_NFE_maf": 7.071e-05, "gnomad_OTH_maf": 0.0, "gnomad_SAS_maf": 3.268e-05, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Deleterious", "pp2_hvar_prediction": "Damaging", "cadd_prediction": 3.682506, "mutationtaster_prediction": null }, "status": "CU", "genomic_position_hg19": 126241503, "genomic_position_hg38": 125320348, "chromosome": "4", "annotation_flag": "automatically_attributed", "lastmodified": "2023-06-06T16:57:50.324393", "ref_allele": "C", "alt_allele": "T", "cdna_change": "c.3937C>T", "protein_change": "p.Pro1313Ser", "transcript_id": "NM_001291285.1", "dbsnp_id": "rs748743944", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI735" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/1626/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/1626/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/1626/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/1626/gene/?format=api" }, "data": { "type": "Gene", "id": "FAT4" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/1626/?format=api" } }, { "type": "SmallVariant", "id": "1643", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": null, "gnomad_AFR_maf": null, "gnomad_AMR_maf": null, "gnomad_ASJ_maf": null, "gnomad_EAS_maf": null, "gnomad_FIN_maf": null, "gnomad_NFE_maf": null, "gnomad_OTH_maf": null, "gnomad_SAS_maf": null, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Deleterious", "pp2_hvar_prediction": "Damaging", "cadd_prediction": 3.815647, "mutationtaster_prediction": "Disease causing" }, "status": "CU", "genomic_position_hg19": 126372318, "genomic_position_hg38": 125451163, "chromosome": "4", "annotation_flag": "automatically_attributed", "lastmodified": "2023-06-06T16:57:50.434888", "ref_allele": "G", "alt_allele": "A", "cdna_change": "c.10147G>A", "protein_change": "p.Gly3383Ser", "transcript_id": "NM_024582.4", "dbsnp_id": "NA", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI744" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/1643/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/1643/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/1643/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/1643/gene/?format=api" }, "data": { "type": "Gene", "id": "FAT4" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/1643/?format=api" } }, { "type": "SmallVariant", "id": "1648", "attributes": { "frequencies": { "KGP_genomes_maf": 0.0004, "KGP_genomes_AFR_maf": 0.0, "KGP_genomes_AMR_maf": 0.0, "KGP_genomes_EAS_maf": 0.0, "KGP_genomes_EUR_maf": 0.002, "KGP_genomes_SAS_maf": 0.0, "gnomad_maf": 3.209e-05, "gnomad_AFR_maf": 0.0, "gnomad_AMR_maf": 0.0, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 7.074e-05, "gnomad_OTH_maf": 0.0, "gnomad_SAS_maf": 0.0, "ESP_AA_maf": 0.0, "ESP_EA_maf": 0.0002442 }, "predictions": { "sift_prediction": "Deleterious", "pp2_hvar_prediction": "Damaging", "cadd_prediction": 3.556445, "mutationtaster_prediction": "Disease causing" }, "status": "CU", "genomic_position_hg19": 126241816, "genomic_position_hg38": 125320661, "chromosome": "4", "annotation_flag": "automatically_attributed", "lastmodified": "2023-06-06T16:57:50.466992", "ref_allele": "C", "alt_allele": "A", "cdna_change": "c.4250C>A", "protein_change": "p.Pro1417His", "transcript_id": "NM_001291285.1", "dbsnp_id": "rs201515596", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI746" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/1648/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/1648/combinations/?format=api" } }, "gene_name": { "links": { "self": 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