Variant List
This API endpoint handles listing (/variants) and retrieval (/variants/<ID>/) of genetic variants from the database
GET /api/genes/ADGRV1/variants/?format=api
https://olida.ibsquare.be/api/variants/210/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/210/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/210/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/210/gene/?format=api" }, "data": { "type": "Gene", "id": "ADGRV1" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/210/?format=api" } }, { "type": "SmallVariant", "id": "212", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": null, "gnomad_AFR_maf": null, "gnomad_AMR_maf": null, "gnomad_ASJ_maf": null, "gnomad_EAS_maf": null, "gnomad_FIN_maf": null, "gnomad_NFE_maf": null, "gnomad_OTH_maf": null, "gnomad_SAS_maf": null, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Deleterious", "pp2_hvar_prediction": "Possibly Damaging", "cadd_prediction": 3.824342, "mutationtaster_prediction": "Disease causing" }, "status": "CU", "genomic_position_hg19": 90086765, "genomic_position_hg38": 90790948, "chromosome": "5", "annotation_flag": "automatically_attributed", "lastmodified": "2023-06-06T16:57:41.768318", "ref_allele": "G", "alt_allele": "T", "cdna_change": null, "protein_change": "p.Asp4707Tyr", "transcript_id": null, "dbsnp_id": "rs1057519383", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI102" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/212/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/212/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/212/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/212/gene/?format=api" }, "data": { "type": "Gene", "id": "ADGRV1" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/212/?format=api" } }, { "type": "SmallVariant", "id": "225", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": 4.049e-06, "gnomad_AFR_maf": 0.0, "gnomad_AMR_maf": 2.931e-05, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 0.0, "gnomad_OTH_maf": 0.0, "gnomad_SAS_maf": 0.0, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": null, "pp2_hvar_prediction": null, "cadd_prediction": 3.794486, "mutationtaster_prediction": "Disease causing" }, "status": "CU", "genomic_position_hg19": 89925074, "genomic_position_hg38": 90629257, "chromosome": "5", "annotation_flag": "manually_attributed", "lastmodified": "2023-06-06T16:57:41.848215", "ref_allele": "A", "alt_allele": "AT", "cdna_change": "c.1563dupT", "protein_change": "p.Pro522fsTer8", "transcript_id": "NM_032119.4", "dbsnp_id": "rs763243011", "variant_effect": "frameshift" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI108" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/225/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/225/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/225/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/225/gene/?format=api" }, "data": { "type": "Gene", "id": "ADGRV1" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/225/?format=api" } }, { "type": "SmallVariant", "id": "226", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": 6.046e-05, "gnomad_AFR_maf": 0.0001296, "gnomad_AMR_maf": 2.927e-05, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 9.764e-05, "gnomad_OTH_maf": 0.0001662, "gnomad_SAS_maf": 0.0, "ESP_AA_maf": 0.0005288, "ESP_EA_maf": 0.0005031 }, "predictions": { "sift_prediction": null, "pp2_hvar_prediction": null, "cadd_prediction": 6.954218, "mutationtaster_prediction": "Disease causing" }, "status": "CU", "genomic_position_hg19": 90151630, "genomic_position_hg38": 90855813, "chromosome": "5", "annotation_flag": "manually_attributed", "lastmodified": "2023-06-06T16:57:41.854443", "ref_allele": "CAT", "alt_allele": "C", "cdna_change": "c.17668_17669delAT", "protein_change": "p.Met5890fsTer10", "transcript_id": "NM_032119.4", "dbsnp_id": "rs757696771", "variant_effect": "frameshift" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI108" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/226/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/226/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/226/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/226/gene/?format=api" }, "data": { "type": "Gene", "id": "ADGRV1" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/226/?format=api" } }, { "type": "SmallVariant", "id": "251", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": null, "gnomad_AFR_maf": null, "gnomad_AMR_maf": null, "gnomad_ASJ_maf": null, "gnomad_EAS_maf": null, "gnomad_FIN_maf": null, "gnomad_NFE_maf": null, "gnomad_OTH_maf": null, "gnomad_SAS_maf": null, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": null, "pp2_hvar_prediction": null, "cadd_prediction": 3.471039, "mutationtaster_prediction": "Disease causing" }, "status": "CU", "genomic_position_hg19": 90144570, "genomic_position_hg38": 90848753, "chromosome": "5", "annotation_flag": "manually_attributed", "lastmodified": "2023-06-06T16:57:42.006965", "ref_allele": "TG", "alt_allele": "T", "cdna_change": "c.17137delG", "protein_change": "p.Ala5713LeufsTer3", "transcript_id": "NM_032119.4", "dbsnp_id": "rs1554135663", "variant_effect": "frameshift" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI122" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/251/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/251/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/251/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/251/gene/?format=api" }, "data": { "type": "Gene", "id": "ADGRV1" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/251/?format=api" } }, { "type": "SmallVariant", "id": "493", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": null, "gnomad_AFR_maf": null, "gnomad_AMR_maf": null, "gnomad_ASJ_maf": null, "gnomad_EAS_maf": null, "gnomad_FIN_maf": null, "gnomad_NFE_maf": null, "gnomad_OTH_maf": null, "gnomad_SAS_maf": null, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": null, "pp2_hvar_prediction": null, "cadd_prediction": 4.504437, "mutationtaster_prediction": "Disease causing" }, "status": "CU", "genomic_position_hg19": 89941910, "genomic_position_hg38": 90646093, "chromosome": "5", "annotation_flag": "manually_attributed", "lastmodified": "2023-06-06T16:57:43.431219", "ref_allele": "T", "alt_allele": "G", "cdna_change": "c.3022+2T>G", "protein_change": null, "transcript_id": "ENST00000405460.9", "dbsnp_id": "NA", "variant_effect": "splicing" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI254" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/493/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/493/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/493/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/493/gene/?format=api" }, "data": { "type": "Gene", "id": "ADGRV1" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/493/?format=api" } }, { "type": "SmallVariant", "id": "1151", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": null, "gnomad_AFR_maf": null, "gnomad_AMR_maf": null, "gnomad_ASJ_maf": null, "gnomad_EAS_maf": null, "gnomad_FIN_maf": null, "gnomad_NFE_maf": null, "gnomad_OTH_maf": null, "gnomad_SAS_maf": null, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": null, "pp2_hvar_prediction": null, "cadd_prediction": 3.369783, "mutationtaster_prediction": "Disease causing" }, "status": "CU", "genomic_position_hg19": 90077329, "genomic_position_hg38": 90781512, "chromosome": "5", "annotation_flag": "manually_corrected", "lastmodified": "2023-06-06T16:57:47.441653", "ref_allele": "A", "alt_allele": "ATGGAACTCCAGGAGGG", "cdna_change": "c.13165_13166insTGGAACTCCAGGAGGG", "protein_change": "p.Ile4389MetfsTer11", "transcript_id": null, "dbsnp_id": "NA", "variant_effect": "frameshift" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI552" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/1151/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/1151/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/1151/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/1151/gene/?format=api" }, "data": { "type": "Gene", "id": "ADGRV1" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/1151/?format=api" } }, { "type": "SmallVariant", "id": "2236", "attributes": { "frequencies": { "KGP_genomes_maf": 0.004, "KGP_genomes_AFR_maf": 0.0, "KGP_genomes_AMR_maf": 0.0014, "KGP_genomes_EAS_maf": 0.0, "KGP_genomes_EUR_maf": 0.003, "KGP_genomes_SAS_maf": 0.0164, "gnomad_maf": 0.004168, "gnomad_AFR_maf": 0.000323, "gnomad_AMR_maf": 0.002263, "gnomad_ASJ_maf": 0.0002983, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.0006962, "gnomad_NFE_maf": 0.004119, "gnomad_OTH_maf": 0.003964, "gnomad_SAS_maf": 0.01464, "ESP_AA_maf": 0.00104, "ESP_EA_maf": 0.003619 }, "predictions": { "sift_prediction": "Tolerated", "pp2_hvar_prediction": "Benign", "cadd_prediction": 2.37326, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 89990155, "genomic_position_hg38": 90694338, "chromosome": "5", "annotation_flag": null, "lastmodified": "2023-06-06T16:57:54.042716", "ref_allele": "C", "alt_allele": "T", "cdna_change": "c.7582C>T", "protein_change": "p.Pro2528Ser", "transcript_id": null, "dbsnp_id": "NA", "variant_effect": null }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI1034" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/2236/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/2236/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/2236/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/2236/gene/?format=api" }, "data": { "type": "Gene", "id": "ADGRV1" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/2236/?format=api" } }, { "type": "SmallVariant", "id": "2238", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": 0.000105, "gnomad_AFR_maf": 0.0004525, "gnomad_AMR_maf": 0.0002622, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 5.565e-05, "gnomad_FIN_maf": 4.68e-05, "gnomad_NFE_maf": 4.453e-05, "gnomad_OTH_maf": 0.0001663, "gnomad_SAS_maf": 6.593e-05, "ESP_AA_maf": 0.0, "ESP_EA_maf": 0.0001212 }, "predictions": { "sift_prediction": "Tolerated", "pp2_hvar_prediction": "Benign", "cadd_prediction": 1.970194, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 90136423, "genomic_position_hg38": 90840606, "chromosome": "5", "annotation_flag": null, "lastmodified": "2023-06-06T16:57:54.055054", "ref_allele": "G", "alt_allele": "A", "cdna_change": "c.16640G>A", "protein_change": "p.Arg5547His", "transcript_id": null, "dbsnp_id": "NA", "variant_effect": null }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI1035" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/2238/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/2238/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/2238/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/2238/gene/?format=api" }, "data": { "type": "Gene", "id": "ADGRV1" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/2238/?format=api" } }, { "type": "SmallVariant", "id": "2764", "attributes": { "frequencies": { "KGP_genomes_maf": 0.0018, "KGP_genomes_AFR_maf": 0.0045, "KGP_genomes_AMR_maf": 0.0014, "KGP_genomes_EAS_maf": 0.001, "KGP_genomes_EUR_maf": 0.001, "KGP_genomes_SAS_maf": 0.0, "gnomad_maf": 0.001446, "gnomad_AFR_maf": 0.005364, "gnomad_AMR_maf": 0.000499, "gnomad_ASJ_maf": 9.952e-05, "gnomad_EAS_maf": 0.003624, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 0.001556, "gnomad_OTH_maf": 0.0003334, "gnomad_SAS_maf": 0.0004921, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Deleterious", "pp2_hvar_prediction": "Damaging", "cadd_prediction": 3.262717, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 89981639, "genomic_position_hg38": 90685822, "chromosome": "5", "annotation_flag": null, "lastmodified": "2023-06-06T16:57:57.101287", "ref_allele": "C", "alt_allele": "T", "cdna_change": "c.6317C>T", "protein_change": null, "transcript_id": null, "dbsnp_id": "NA", "variant_effect": null }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI1319" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/2764/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/2764/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/2764/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/2764/gene/?format=api" }, "data": { "type": "Gene", "id": "ADGRV1" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/2764/?format=api" } }, { "type": "SmallVariant", "id": "2765", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": null, "gnomad_AFR_maf": null, "gnomad_AMR_maf": null, "gnomad_ASJ_maf": null, "gnomad_EAS_maf": null, "gnomad_FIN_maf": null, "gnomad_NFE_maf": null, "gnomad_OTH_maf": null, "gnomad_SAS_maf": null, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Deleterious", "pp2_hvar_prediction": "Possibly Damaging", "cadd_prediction": 2.531887, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 90041428, "genomic_position_hg38": 90745611, "chromosome": "5", "annotation_flag": null, "lastmodified": "2023-06-06T16:57:57.107355", "ref_allele": "A", "alt_allele": "T", "cdna_change": "c.10790A>T", "protein_change": null, "transcript_id": null, "dbsnp_id": "NA", "variant_effect": null }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI1319" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/2765/relationships/in_combination?format=api", "related": 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