This API endpoint handles listing (/variants) and retrieval (/variants/<ID>/) of genetic variants from the database

GET /api/genes/ADGRV1/variants/?format=api
HTTP 200 OK
Allow: GET, HEAD, OPTIONS
Content-Type: application/vnd.api+json
Vary: Accept

{
    "data": [
        {
            "type": "SmallVariant",
            "id": "210",
            "attributes": {
                "frequencies": {
                    "KGP_genomes_maf": null,
                    "KGP_genomes_AFR_maf": null,
                    "KGP_genomes_AMR_maf": null,
                    "KGP_genomes_EAS_maf": null,
                    "KGP_genomes_EUR_maf": null,
                    "KGP_genomes_SAS_maf": null,
                    "gnomad_maf": null,
                    "gnomad_AFR_maf": null,
                    "gnomad_AMR_maf": null,
                    "gnomad_ASJ_maf": null,
                    "gnomad_EAS_maf": null,
                    "gnomad_FIN_maf": null,
                    "gnomad_NFE_maf": null,
                    "gnomad_OTH_maf": null,
                    "gnomad_SAS_maf": null,
                    "ESP_AA_maf": null,
                    "ESP_EA_maf": null
                },
                "predictions": {
                    "sift_prediction": "Tolerated",
                    "pp2_hvar_prediction": "Benign",
                    "cadd_prediction": 0.557316,
                    "mutationtaster_prediction": "Polymorphism"
                },
                "status": "CU",
                "genomic_position_hg19": 90124769,
                "genomic_position_hg38": 90828952,
                "chromosome": "5",
                "annotation_flag": "automatically_attributed",
                "lastmodified": "2023-06-06T16:57:41.756409",
                "ref_allele": "G",
                "alt_allele": "C",
                "cdna_change": null,
                "protein_change": "p.Gln5459His",
                "transcript_id": null,
                "dbsnp_id": "rs371947306",
                "variant_effect": "missense"
            },
            "relationships": {
                "in_combination": {
                    "meta": {
                        "count": 1
                    },
                    "data": [
                        {
                            "type": "Combination",
                            "id": "OLI101"
                        }
                    ],
                    "links": {
                        "self": "https://olida.ibsquare.be/api/variants/210/relationships/in_combination?format=api",
                        "related": "https://olida.ibsquare.be/api/variants/210/combinations/?format=api"
                    }
                },
                "gene_name": {
                    "links": {
                        "self": "https://olida.ibsquare.be/api/variants/210/relationships/gene_name?format=api",
                        "related": "https://olida.ibsquare.be/api/variants/210/gene/?format=api"
                    },
                    "data": {
                        "type": "Gene",
                        "id": "ADGRV1"
                    }
                }
            },
            "links": {
                "self": "https://olida.ibsquare.be/api/variants/210/?format=api"
            }
        },
        {
            "type": "SmallVariant",
            "id": "212",
            "attributes": {
                "frequencies": {
                    "KGP_genomes_maf": null,
                    "KGP_genomes_AFR_maf": null,
                    "KGP_genomes_AMR_maf": null,
                    "KGP_genomes_EAS_maf": null,
                    "KGP_genomes_EUR_maf": null,
                    "KGP_genomes_SAS_maf": null,
                    "gnomad_maf": null,
                    "gnomad_AFR_maf": null,
                    "gnomad_AMR_maf": null,
                    "gnomad_ASJ_maf": null,
                    "gnomad_EAS_maf": null,
                    "gnomad_FIN_maf": null,
                    "gnomad_NFE_maf": null,
                    "gnomad_OTH_maf": null,
                    "gnomad_SAS_maf": null,
                    "ESP_AA_maf": null,
                    "ESP_EA_maf": null
                },
                "predictions": {
                    "sift_prediction": "Deleterious",
                    "pp2_hvar_prediction": "Possibly Damaging",
                    "cadd_prediction": 3.824342,
                    "mutationtaster_prediction": "Disease causing"
                },
                "status": "CU",
                "genomic_position_hg19": 90086765,
                "genomic_position_hg38": 90790948,
                "chromosome": "5",
                "annotation_flag": "automatically_attributed",
                "lastmodified": "2023-06-06T16:57:41.768318",
                "ref_allele": "G",
                "alt_allele": "T",
                "cdna_change": null,
                "protein_change": "p.Asp4707Tyr",
                "transcript_id": null,
                "dbsnp_id": "rs1057519383",
                "variant_effect": "missense"
            },
            "relationships": {
                "in_combination": {
                    "meta": {
                        "count": 1
                    },
                    "data": [
                        {
                            "type": "Combination",
                            "id": "OLI102"
                        }
                    ],
                    "links": {
                        "self": "https://olida.ibsquare.be/api/variants/212/relationships/in_combination?format=api",
                        "related": "https://olida.ibsquare.be/api/variants/212/combinations/?format=api"
                    }
                },
                "gene_name": {
                    "links": {
                        "self": "https://olida.ibsquare.be/api/variants/212/relationships/gene_name?format=api",
                        "related": "https://olida.ibsquare.be/api/variants/212/gene/?format=api"
                    },
                    "data": {
                        "type": "Gene",
                        "id": "ADGRV1"
                    }
                }
            },
            "links": {
                "self": "https://olida.ibsquare.be/api/variants/212/?format=api"
            }
        },
        {
            "type": "SmallVariant",
            "id": "225",
            "attributes": {
                "frequencies": {
                    "KGP_genomes_maf": null,
                    "KGP_genomes_AFR_maf": null,
                    "KGP_genomes_AMR_maf": null,
                    "KGP_genomes_EAS_maf": null,
                    "KGP_genomes_EUR_maf": null,
                    "KGP_genomes_SAS_maf": null,
                    "gnomad_maf": 4.049e-06,
                    "gnomad_AFR_maf": 0.0,
                    "gnomad_AMR_maf": 2.931e-05,
                    "gnomad_ASJ_maf": 0.0,
                    "gnomad_EAS_maf": 0.0,
                    "gnomad_FIN_maf": 0.0,
                    "gnomad_NFE_maf": 0.0,
                    "gnomad_OTH_maf": 0.0,
                    "gnomad_SAS_maf": 0.0,
                    "ESP_AA_maf": null,
                    "ESP_EA_maf": null
                },
                "predictions": {
                    "sift_prediction": null,
                    "pp2_hvar_prediction": null,
                    "cadd_prediction": 3.794486,
                    "mutationtaster_prediction": "Disease causing"
                },
                "status": "CU",
                "genomic_position_hg19": 89925074,
                "genomic_position_hg38": 90629257,
                "chromosome": "5",
                "annotation_flag": "manually_attributed",
                "lastmodified": "2023-06-06T16:57:41.848215",
                "ref_allele": "A",
                "alt_allele": "AT",
                "cdna_change": "c.1563dupT",
                "protein_change": "p.Pro522fsTer8",
                "transcript_id": "NM_032119.4",
                "dbsnp_id": "rs763243011",
                "variant_effect": "frameshift"
            },
            "relationships": {
                "in_combination": {
                    "meta": {
                        "count": 1
                    },
                    "data": [
                        {
                            "type": "Combination",
                            "id": "OLI108"
                        }
                    ],
                    "links": {
                        "self": "https://olida.ibsquare.be/api/variants/225/relationships/in_combination?format=api",
                        "related": "https://olida.ibsquare.be/api/variants/225/combinations/?format=api"
                    }
                },
                "gene_name": {
                    "links": {
                        "self": "https://olida.ibsquare.be/api/variants/225/relationships/gene_name?format=api",
                        "related": "https://olida.ibsquare.be/api/variants/225/gene/?format=api"
                    },
                    "data": {
                        "type": "Gene",
                        "id": "ADGRV1"
                    }
                }
            },
            "links": {
                "self": "https://olida.ibsquare.be/api/variants/225/?format=api"
            }
        },
        {
            "type": "SmallVariant",
            "id": "226",
            "attributes": {
                "frequencies": {
                    "KGP_genomes_maf": null,
                    "KGP_genomes_AFR_maf": null,
                    "KGP_genomes_AMR_maf": null,
                    "KGP_genomes_EAS_maf": null,
                    "KGP_genomes_EUR_maf": null,
                    "KGP_genomes_SAS_maf": null,
                    "gnomad_maf": 6.046e-05,
                    "gnomad_AFR_maf": 0.0001296,
                    "gnomad_AMR_maf": 2.927e-05,
                    "gnomad_ASJ_maf": 0.0,
                    "gnomad_EAS_maf": 0.0,
                    "gnomad_FIN_maf": 0.0,
                    "gnomad_NFE_maf": 9.764e-05,
                    "gnomad_OTH_maf": 0.0001662,
                    "gnomad_SAS_maf": 0.0,
                    "ESP_AA_maf": 0.0005288,
                    "ESP_EA_maf": 0.0005031
                },
                "predictions": {
                    "sift_prediction": null,
                    "pp2_hvar_prediction": null,
                    "cadd_prediction": 6.954218,
                    "mutationtaster_prediction": "Disease causing"
                },
                "status": "CU",
                "genomic_position_hg19": 90151630,
                "genomic_position_hg38": 90855813,
                "chromosome": "5",
                "annotation_flag": "manually_attributed",
                "lastmodified": "2023-06-06T16:57:41.854443",
                "ref_allele": "CAT",
                "alt_allele": "C",
                "cdna_change": "c.17668_17669delAT",
                "protein_change": "p.Met5890fsTer10",
                "transcript_id": "NM_032119.4",
                "dbsnp_id": "rs757696771",
                "variant_effect": "frameshift"
            },
            "relationships": {
                "in_combination": {
                    "meta": {
                        "count": 1
                    },
                    "data": [
                        {
                            "type": "Combination",
                            "id": "OLI108"
                        }
                    ],
                    "links": {
                        "self": "https://olida.ibsquare.be/api/variants/226/relationships/in_combination?format=api",
                        "related": "https://olida.ibsquare.be/api/variants/226/combinations/?format=api"
                    }
                },
                "gene_name": {
                    "links": {
                        "self": "https://olida.ibsquare.be/api/variants/226/relationships/gene_name?format=api",
                        "related": "https://olida.ibsquare.be/api/variants/226/gene/?format=api"
                    },
                    "data": {
                        "type": "Gene",
                        "id": "ADGRV1"
                    }
                }
            },
            "links": {
                "self": "https://olida.ibsquare.be/api/variants/226/?format=api"
            }
        },
        {
            "type": "SmallVariant",
            "id": "251",
            "attributes": {
                "frequencies": {
                    "KGP_genomes_maf": null,
                    "KGP_genomes_AFR_maf": null,
                    "KGP_genomes_AMR_maf": null,
                    "KGP_genomes_EAS_maf": null,
                    "KGP_genomes_EUR_maf": null,
                    "KGP_genomes_SAS_maf": null,
                    "gnomad_maf": null,
                    "gnomad_AFR_maf": null,
                    "gnomad_AMR_maf": null,
                    "gnomad_ASJ_maf": null,
                    "gnomad_EAS_maf": null,
                    "gnomad_FIN_maf": null,
                    "gnomad_NFE_maf": null,
                    "gnomad_OTH_maf": null,
                    "gnomad_SAS_maf": null,
                    "ESP_AA_maf": null,
                    "ESP_EA_maf": null
                },
                "predictions": {
                    "sift_prediction": null,
                    "pp2_hvar_prediction": null,
                    "cadd_prediction": 3.471039,
                    "mutationtaster_prediction": "Disease causing"
                },
                "status": "CU",
                "genomic_position_hg19": 90144570,
                "genomic_position_hg38": 90848753,
                "chromosome": "5",
                "annotation_flag": "manually_attributed",
                "lastmodified": "2023-06-06T16:57:42.006965",
                "ref_allele": "TG",
                "alt_allele": "T",
                "cdna_change": "c.17137delG",
                "protein_change": "p.Ala5713LeufsTer3",
                "transcript_id": "NM_032119.4",
                "dbsnp_id": "rs1554135663",
                "variant_effect": "frameshift"
            },
            "relationships": {
                "in_combination": {
                    "meta": {
                        "count": 1
                    },
                    "data": [
                        {
                            "type": "Combination",
                            "id": "OLI122"
                        }
                    ],
                    "links": {
                        "self": "https://olida.ibsquare.be/api/variants/251/relationships/in_combination?format=api",
                        "related": "https://olida.ibsquare.be/api/variants/251/combinations/?format=api"
                    }
                },
                "gene_name": {
                    "links": {
                        "self": "https://olida.ibsquare.be/api/variants/251/relationships/gene_name?format=api",
                        "related": "https://olida.ibsquare.be/api/variants/251/gene/?format=api"
                    },
                    "data": {
                        "type": "Gene",
                        "id": "ADGRV1"
                    }
                }
            },
            "links": {
                "self": "https://olida.ibsquare.be/api/variants/251/?format=api"
            }
        },
        {
            "type": "SmallVariant",
            "id": "493",
            "attributes": {
                "frequencies": {
                    "KGP_genomes_maf": null,
                    "KGP_genomes_AFR_maf": null,
                    "KGP_genomes_AMR_maf": null,
                    "KGP_genomes_EAS_maf": null,
                    "KGP_genomes_EUR_maf": null,
                    "KGP_genomes_SAS_maf": null,
                    "gnomad_maf": null,
                    "gnomad_AFR_maf": null,
                    "gnomad_AMR_maf": null,
                    "gnomad_ASJ_maf": null,
                    "gnomad_EAS_maf": null,
                    "gnomad_FIN_maf": null,
                    "gnomad_NFE_maf": null,
                    "gnomad_OTH_maf": null,
                    "gnomad_SAS_maf": null,
                    "ESP_AA_maf": null,
                    "ESP_EA_maf": null
                },
                "predictions": {
                    "sift_prediction": null,
                    "pp2_hvar_prediction": null,
                    "cadd_prediction": 4.504437,
                    "mutationtaster_prediction": "Disease causing"
                },
                "status": "CU",
                "genomic_position_hg19": 89941910,
                "genomic_position_hg38": 90646093,
                "chromosome": "5",
                "annotation_flag": "manually_attributed",
                "lastmodified": "2023-06-06T16:57:43.431219",
                "ref_allele": "T",
                "alt_allele": "G",
                "cdna_change": "c.3022+2T>G",
                "protein_change": null,
                "transcript_id": "ENST00000405460.9",
                "dbsnp_id": "NA",
                "variant_effect": "splicing"
            },
            "relationships": {
                "in_combination": {
                    "meta": {
                        "count": 1
                    },
                    "data": [
                        {
                            "type": "Combination",
                            "id": "OLI254"
                        }
                    ],
                    "links": {
                        "self": "https://olida.ibsquare.be/api/variants/493/relationships/in_combination?format=api",
                        "related": "https://olida.ibsquare.be/api/variants/493/combinations/?format=api"
                    }
                },
                "gene_name": {
                    "links": {
                        "self": "https://olida.ibsquare.be/api/variants/493/relationships/gene_name?format=api",
                        "related": "https://olida.ibsquare.be/api/variants/493/gene/?format=api"
                    },
                    "data": {
                        "type": "Gene",
                        "id": "ADGRV1"
                    }
                }
            },
            "links": {
                "self": "https://olida.ibsquare.be/api/variants/493/?format=api"
            }
        },
        {
            "type": "SmallVariant",
            "id": "1151",
            "attributes": {
                "frequencies": {
                    "KGP_genomes_maf": null,
                    "KGP_genomes_AFR_maf": null,
                    "KGP_genomes_AMR_maf": null,
                    "KGP_genomes_EAS_maf": null,
                    "KGP_genomes_EUR_maf": null,
                    "KGP_genomes_SAS_maf": null,
                    "gnomad_maf": null,
                    "gnomad_AFR_maf": null,
                    "gnomad_AMR_maf": null,
                    "gnomad_ASJ_maf": null,
                    "gnomad_EAS_maf": null,
                    "gnomad_FIN_maf": null,
                    "gnomad_NFE_maf": null,
                    "gnomad_OTH_maf": null,
                    "gnomad_SAS_maf": null,
                    "ESP_AA_maf": null,
                    "ESP_EA_maf": null
                },
                "predictions": {
                    "sift_prediction": null,
                    "pp2_hvar_prediction": null,
                    "cadd_prediction": 3.369783,
                    "mutationtaster_prediction": "Disease causing"
                },
                "status": "CU",
                "genomic_position_hg19": 90077329,
                "genomic_position_hg38": 90781512,
                "chromosome": "5",
                "annotation_flag": "manually_corrected",
                "lastmodified": "2023-06-06T16:57:47.441653",
                "ref_allele": "A",
                "alt_allele": "ATGGAACTCCAGGAGGG",
                "cdna_change": "c.13165_13166insTGGAACTCCAGGAGGG",
                "protein_change": "p.Ile4389MetfsTer11",
                "transcript_id": null,
                "dbsnp_id": "NA",
                "variant_effect": "frameshift"
            },
            "relationships": {
                "in_combination": {
                    "meta": {
                        "count": 1
                    },
                    "data": [
                        {
                            "type": "Combination",
                            "id": "OLI552"
                        }
                    ],
                    "links": {
                        "self": "https://olida.ibsquare.be/api/variants/1151/relationships/in_combination?format=api",
                        "related": "https://olida.ibsquare.be/api/variants/1151/combinations/?format=api"
                    }
                },
                "gene_name": {
                    "links": {
                        "self": "https://olida.ibsquare.be/api/variants/1151/relationships/gene_name?format=api",
                        "related": "https://olida.ibsquare.be/api/variants/1151/gene/?format=api"
                    },
                    "data": {
                        "type": "Gene",
                        "id": "ADGRV1"
                    }
                }
            },
            "links": {
                "self": "https://olida.ibsquare.be/api/variants/1151/?format=api"
            }
        },
        {
            "type": "SmallVariant",
            "id": "2236",
            "attributes": {
                "frequencies": {
                    "KGP_genomes_maf": 0.004,
                    "KGP_genomes_AFR_maf": 0.0,
                    "KGP_genomes_AMR_maf": 0.0014,
                    "KGP_genomes_EAS_maf": 0.0,
                    "KGP_genomes_EUR_maf": 0.003,
                    "KGP_genomes_SAS_maf": 0.0164,
                    "gnomad_maf": 0.004168,
                    "gnomad_AFR_maf": 0.000323,
                    "gnomad_AMR_maf": 0.002263,
                    "gnomad_ASJ_maf": 0.0002983,
                    "gnomad_EAS_maf": 0.0,
                    "gnomad_FIN_maf": 0.0006962,
                    "gnomad_NFE_maf": 0.004119,
                    "gnomad_OTH_maf": 0.003964,
                    "gnomad_SAS_maf": 0.01464,
                    "ESP_AA_maf": 0.00104,
                    "ESP_EA_maf": 0.003619
                },
                "predictions": {
                    "sift_prediction": "Tolerated",
                    "pp2_hvar_prediction": "Benign",
                    "cadd_prediction": 2.37326,
                    "mutationtaster_prediction": "Polymorphism"
                },
                "status": "CU",
                "genomic_position_hg19": 89990155,
                "genomic_position_hg38": 90694338,
                "chromosome": "5",
                "annotation_flag": null,
                "lastmodified": "2023-06-06T16:57:54.042716",
                "ref_allele": "C",
                "alt_allele": "T",
                "cdna_change": "c.7582C>T",
                "protein_change": "p.Pro2528Ser",
                "transcript_id": null,
                "dbsnp_id": "NA",
                "variant_effect": null
            },
            "relationships": {
                "in_combination": {
                    "meta": {
                        "count": 1
                    },
                    "data": [
                        {
                            "type": "Combination",
                            "id": "OLI1034"
                        }
                    ],
                    "links": {
                        "self": "https://olida.ibsquare.be/api/variants/2236/relationships/in_combination?format=api",
                        "related": "https://olida.ibsquare.be/api/variants/2236/combinations/?format=api"
                    }
                },
                "gene_name": {
                    "links": {
                        "self": "https://olida.ibsquare.be/api/variants/2236/relationships/gene_name?format=api",
                        "related": "https://olida.ibsquare.be/api/variants/2236/gene/?format=api"
                    },
                    "data": {
                        "type": "Gene",
                        "id": "ADGRV1"
                    }
                }
            },
            "links": {
                "self": "https://olida.ibsquare.be/api/variants/2236/?format=api"
            }
        },
        {
            "type": "SmallVariant",
            "id": "2238",
            "attributes": {
                "frequencies": {
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                    "KGP_genomes_AFR_maf": null,
                    "KGP_genomes_AMR_maf": null,
                    "KGP_genomes_EAS_maf": null,
                    "KGP_genomes_EUR_maf": null,
                    "KGP_genomes_SAS_maf": null,
                    "gnomad_maf": 0.000105,
                    "gnomad_AFR_maf": 0.0004525,
                    "gnomad_AMR_maf": 0.0002622,
                    "gnomad_ASJ_maf": 0.0,
                    "gnomad_EAS_maf": 5.565e-05,
                    "gnomad_FIN_maf": 4.68e-05,
                    "gnomad_NFE_maf": 4.453e-05,
                    "gnomad_OTH_maf": 0.0001663,
                    "gnomad_SAS_maf": 6.593e-05,
                    "ESP_AA_maf": 0.0,
                    "ESP_EA_maf": 0.0001212
                },
                "predictions": {
                    "sift_prediction": "Tolerated",
                    "pp2_hvar_prediction": "Benign",
                    "cadd_prediction": 1.970194,
                    "mutationtaster_prediction": "Polymorphism"
                },
                "status": "CU",
                "genomic_position_hg19": 90136423,
                "genomic_position_hg38": 90840606,
                "chromosome": "5",
                "annotation_flag": null,
                "lastmodified": "2023-06-06T16:57:54.055054",
                "ref_allele": "G",
                "alt_allele": "A",
                "cdna_change": "c.16640G>A",
                "protein_change": "p.Arg5547His",
                "transcript_id": null,
                "dbsnp_id": "NA",
                "variant_effect": null
            },
            "relationships": {
                "in_combination": {
                    "meta": {
                        "count": 1
                    },
                    "data": [
                        {
                            "type": "Combination",
                            "id": "OLI1035"
                        }
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