Variant List
This API endpoint handles listing (/variants) and retrieval (/variants/<ID>/) of genetic variants from the database
GET /api/combinations/OLI805/variants/?format=api
{ "data": [ { "type": "SmallVariant", "id": "1770", "attributes": { "frequencies": { "KGP_genomes_maf": 0.0004, "KGP_genomes_AFR_maf": 0.0, "KGP_genomes_AMR_maf": 0.0, "KGP_genomes_EAS_maf": 0.0, "KGP_genomes_EUR_maf": 0.002, "KGP_genomes_SAS_maf": 0.0, "gnomad_maf": 0.0004746, "gnomad_AFR_maf": 0.0001231, "gnomad_AMR_maf": 0.00159, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 9.301e-05, "gnomad_NFE_maf": 0.0005124, "gnomad_OTH_maf": 0.0003262, "gnomad_SAS_maf": 0.0, "ESP_AA_maf": 0.0, "ESP_EA_maf": 0.0005814 }, "predictions": { "sift_prediction": null, "pp2_hvar_prediction": null, "cadd_prediction": -0.200386, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 6471182, "genomic_position_hg38": 6362016, "chromosome": "12", "annotation_flag": "manually_corrected", "lastmodified": "2023-06-06T16:57:51.216473", "ref_allele": "C", "alt_allele": "T", "cdna_change": "c.944+35G>A", "protein_change": null, "transcript_id": "NM_001159576.2):c.1052+35G>A", "dbsnp_id": "rs55773452", "variant_effect": "unknown" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI805" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/1770/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/1770/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/1770/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/1770/gene/?format=api" }, "data": { "type": "Gene", "id": "SCNN1A" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/1770/?format=api" } }, { "type": "SmallVariant", "id": "1771", "attributes": { "frequencies": { "KGP_genomes_maf": 0.0849, "KGP_genomes_AFR_maf": 0.2504, "KGP_genomes_AMR_maf": 0.0447, "KGP_genomes_EAS_maf": 0.0, "KGP_genomes_EUR_maf": 0.0616, "KGP_genomes_SAS_maf": 0.001, "gnomad_maf": 0.05631, "gnomad_AFR_maf": 0.2257, "gnomad_AMR_maf": 0.03839, "gnomad_ASJ_maf": 0.04802, "gnomad_EAS_maf": 0.0003806, "gnomad_FIN_maf": 0.08972, "gnomad_NFE_maf": 0.05201, "gnomad_OTH_maf": 0.05831, "gnomad_SAS_maf": 0.01486, "ESP_AA_maf": 0.2082, "ESP_EA_maf": 0.05186 }, "predictions": { "sift_prediction": null, "pp2_hvar_prediction": null, "cadd_prediction": 0.239911, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 23379279, "genomic_position_hg38": 23367958, "chromosome": "16", "annotation_flag": "automatically_attributed_and_verified", "lastmodified": "2023-06-06T16:57:51.223000", "ref_allele": "C", "alt_allele": "T", "cdna_change": "c.879C>T", "protein_change": "p.Phe293=", "transcript_id": "NM_000336.2", "dbsnp_id": "rs250563", "variant_effect": "splicing" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI805" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/1771/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/1771/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/1771/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/1771/gene/?format=api" }, "data": { "type": "Gene", "id": "SCNN1B" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/1771/?format=api" } } ], "meta": { "database_name": "OLIgogenic diseases DAtabase (OLIDA)", "resource_url": "olida.ibsquare.be", "api_release_year": "2021", "api_developer": [ [ "Arnau Dillen", "arnau.dillen@ulb.ac.be" ], [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_version": "0.3", "api_maintainers": [ [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_documentation": [ "olida.ibsquare.be/api/swagger", "olida.ibsquare.be/api/redoc" ], "copyright": "Copyright (c) 2025 · OLIDA All Rights Reserved.", "license": "CC Attribution-NonCommercial 4.0 International License", "ontologies": { "ORDO": "http://bioportal.bioontology.org/ontologies/ORDO", "GENO": "http://purl.obolibrary.org/obo/geno.owl", "MI": "http://purl.obolibrary.org/obo/mi.owl", "NCIT": "http://purl.obolibrary.org/obo/ncit.owl", "OGI": "http://purl.obolibrary.org/obo/ogi.owl", "OGG": "http://purl.obolibrary.org/obo/ogg.owl" }, "relevant_publications_doi": [ "10.1093/nar/gkv1068", "10.1093/database/baac023" ], "Variant serializers": [ "SmallVariantSerializer", "CopyNumberVariantSerializer" ], "size": 2 } }