Variant List
This API endpoint handles listing (/variants) and retrieval (/variants/<ID>/) of genetic variants from the database
GET /api/combinations/OLI602/variants/?format=api
{ "data": [ { "type": "SmallVariant", "id": "1288", "attributes": { "frequencies": { "KGP_genomes_maf": 0.0052, "KGP_genomes_AFR_maf": 0.0174, "KGP_genomes_AMR_maf": 0.0029, "KGP_genomes_EAS_maf": 0.0, "KGP_genomes_EUR_maf": 0.001, "KGP_genomes_SAS_maf": 0.0, "gnomad_maf": 0.002092, "gnomad_AFR_maf": 0.01163, "gnomad_AMR_maf": 0.001418, "gnomad_ASJ_maf": 0.000199, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.0007392, "gnomad_NFE_maf": 0.002216, "gnomad_OTH_maf": 0.002943, "gnomad_SAS_maf": 0.0, "ESP_AA_maf": 0.01226, "ESP_EA_maf": 0.001395 }, "predictions": { "sift_prediction": "Tolerated", "pp2_hvar_prediction": "Benign", "cadd_prediction": 2.095735, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 16436324, "genomic_position_hg38": 16436326, "chromosome": "9", "annotation_flag": "automatically_attributed", "lastmodified": "2023-06-06T16:57:48.238536", "ref_allele": "G", "alt_allele": "T", "cdna_change": "c.1868C>A", "protein_change": "p.Pro623His", "transcript_id": "NM_017637.5", "dbsnp_id": "rs114596065", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 2 }, "data": [ { "type": "Combination", "id": "OLI601" }, { "type": "Combination", "id": "OLI602" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/1288/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/1288/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/1288/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/1288/gene/?format=api" }, "data": { "type": "Gene", "id": "BNC2" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/1288/?format=api" } }, { "type": "SmallVariant", "id": "1294", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": null, "gnomad_AFR_maf": null, "gnomad_AMR_maf": null, "gnomad_ASJ_maf": null, "gnomad_EAS_maf": null, "gnomad_FIN_maf": null, "gnomad_NFE_maf": null, "gnomad_OTH_maf": null, "gnomad_SAS_maf": null, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Deleterious", "pp2_hvar_prediction": "Benign", "cadd_prediction": 1.866625, "mutationtaster_prediction": null }, "status": "CU", "genomic_position_hg19": 149671673, "genomic_position_hg38": 150503403, "chromosome": "X", "annotation_flag": "automatically_attributed", "lastmodified": "2023-06-06T16:57:48.276107", "ref_allele": "C", "alt_allele": "G", "cdna_change": "c.2170C>G", "protein_change": "p.Leu724Val", "transcript_id": "NM_005491.4", "dbsnp_id": "NA", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI602" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/1294/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/1294/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/1294/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/1294/gene/?format=api" }, "data": { "type": "Gene", "id": "MAMLD1" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/1294/?format=api" } }, { "type": "SmallVariant", "id": "1295", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": null, "gnomad_AFR_maf": null, "gnomad_AMR_maf": null, "gnomad_ASJ_maf": null, "gnomad_EAS_maf": null, "gnomad_FIN_maf": null, "gnomad_NFE_maf": null, "gnomad_OTH_maf": null, "gnomad_SAS_maf": null, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Tolerated", "pp2_hvar_prediction": "Benign", "cadd_prediction": 1.417471, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 212788544, "genomic_position_hg38": 212615202, "chromosome": "1", "annotation_flag": "automatically_attributed", "lastmodified": "2023-06-06T16:57:48.282315", "ref_allele": "G", "alt_allele": "T", "cdna_change": "c.181G>T", "protein_change": "p.Ala61Ser", "transcript_id": "NM_001030287.3", "dbsnp_id": "rs1558240466", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI602" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/1295/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/1295/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/1295/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/1295/gene/?format=api" }, "data": { "type": "Gene", "id": "ATF3" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/1295/?format=api" } }, { "type": "SmallVariant", "id": "1296", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": null, "gnomad_AFR_maf": null, "gnomad_AMR_maf": null, "gnomad_ASJ_maf": null, "gnomad_EAS_maf": null, "gnomad_FIN_maf": null, "gnomad_NFE_maf": null, "gnomad_OTH_maf": null, "gnomad_SAS_maf": null, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Tolerated", "pp2_hvar_prediction": "Benign", "cadd_prediction": -0.469015, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 75013066, "genomic_position_hg38": 74720725, "chromosome": "15", "annotation_flag": "automatically_attributed", "lastmodified": "2023-06-06T16:57:48.288717", "ref_allele": "G", "alt_allele": "T", "cdna_change": "c.1303C>A", "protein_change": "p.Arg435Ser", "transcript_id": "NM_001319216.1", "dbsnp_id": "rs2063161723", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI602" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/1296/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/1296/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/1296/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/1296/gene/?format=api" }, "data": { "type": "Gene", "id": "CYP1A1" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/1296/?format=api" } }, { "type": "SmallVariant", "id": "1297", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": 8.769e-05, "gnomad_AFR_maf": 0.0, "gnomad_AMR_maf": 5.785e-05, "gnomad_ASJ_maf": 0.0007938, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 7.921e-05, "gnomad_OTH_maf": 0.0004897, "gnomad_SAS_maf": 0.0, "ESP_AA_maf": 0.0, "ESP_EA_maf": 0.0001163 }, "predictions": { "sift_prediction": null, "pp2_hvar_prediction": "Unknown", "cadd_prediction": 0.759424, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 72211882, "genomic_position_hg38": 71299647, "chromosome": "8", "annotation_flag": "manually_corrected", "lastmodified": "2023-06-06T16:57:48.294977", "ref_allele": "A", "alt_allele": "G", "cdna_change": "c.531T>C", "protein_change": "p.Ser210=", "transcript_id": "NM_172060.2", "dbsnp_id": "rs373102227", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI602" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/1297/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/1297/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/1297/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/1297/gene/?format=api" }, "data": { "type": "Gene", "id": "EYA1" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/1297/?format=api" } }, { "type": "SmallVariant", "id": "1298", "attributes": { "frequencies": { "KGP_genomes_maf": 0.0005, "KGP_genomes_AFR_maf": 0.002, "KGP_genomes_AMR_maf": 0.0, "KGP_genomes_EAS_maf": 0.0, "KGP_genomes_EUR_maf": 0.0, "KGP_genomes_SAS_maf": 0.0, "gnomad_maf": 0.0002152, "gnomad_AFR_maf": 0.002348, "gnomad_AMR_maf": 0.0001096, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 4.934e-05, "gnomad_OTH_maf": 0.0004492, "gnomad_SAS_maf": 5.245e-05, "ESP_AA_maf": 0.003484, "ESP_EA_maf": 0.0 }, "predictions": { "sift_prediction": null, "pp2_hvar_prediction": null, "cadd_prediction": 0.177237, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 153596078, "genomic_position_hg38": 154367710, "chromosome": "X", "annotation_flag": "manually_corrected", "lastmodified": "2023-06-06T16:57:48.301357", "ref_allele": "G", "alt_allele": "A", "cdna_change": "c.651C>T", "protein_change": "p.Asp217=", "transcript_id": "NM_001456.3", "dbsnp_id": "rs34644500", "variant_effect": "silent" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI602" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/1298/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/1298/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/1298/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/1298/gene/?format=api" }, "data": { "type": "Gene", "id": "FLNA" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/1298/?format=api" } }, { "type": "SmallVariant", "id": "1299", "attributes": { "frequencies": { "KGP_genomes_maf": 0.0004, "KGP_genomes_AFR_maf": 0.0, "KGP_genomes_AMR_maf": 0.0029, "KGP_genomes_EAS_maf": 0.0, "KGP_genomes_EUR_maf": 0.0, "KGP_genomes_SAS_maf": 0.0, "gnomad_maf": 2.439e-05, "gnomad_AFR_maf": 0.0, "gnomad_AMR_maf": 0.0001186, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 1.787e-05, "gnomad_OTH_maf": 0.0, "gnomad_SAS_maf": 0.0, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Deleterious", "pp2_hvar_prediction": "Possibly Damaging", "cadd_prediction": 3.104797, "mutationtaster_prediction": null }, "status": "CU", "genomic_position_hg19": 79334181, "genomic_position_hg38": 78413027, "chromosome": "4", "annotation_flag": "automatically_attributed_and_verified", "lastmodified": "2023-06-06T16:57:48.307594", "ref_allele": "T", "alt_allele": "C", "cdna_change": "c.4367T>C", "protein_change": "p.Ile1456Thr", "transcript_id": "NM_025074.6", "dbsnp_id": "rs560902495", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI602" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/1299/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/1299/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/1299/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/1299/gene/?format=api" }, "data": { "type": "Gene", "id": "FRAS1" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/1299/?format=api" } }, { "type": "SmallVariant", "id": "1300", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": 1.998e-05, "gnomad_AFR_maf": 0.0, "gnomad_AMR_maf": 2.898e-05, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 0.000109, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 1.768e-05, "gnomad_OTH_maf": 0.0, "gnomad_SAS_maf": 0.0, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": null, "pp2_hvar_prediction": null, "cadd_prediction": -0.863461, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 42066017, "genomic_position_hg38": 42026418, "chromosome": "7", "annotation_flag": "automatically_attributed_and_verified", "lastmodified": "2023-06-06T16:57:48.313856", "ref_allele": "C", "alt_allele": "T", "cdna_change": "c.1029-6G>A", "protein_change": null, "transcript_id": "NM_000168.5", "dbsnp_id": "rs748670269", "variant_effect": "splicing" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI602" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/1300/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/1300/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/1300/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/1300/gene/?format=api" }, "data": { "type": "Gene", "id": "GLI3" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/1300/?format=api" } }, { "type": "SmallVariant", "id": "1301", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": 2.055e-05, "gnomad_AFR_maf": 0.0, "gnomad_AMR_maf": 0.0, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 1.843e-05, "gnomad_OTH_maf": 0.0, "gnomad_SAS_maf": 9.824e-05, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Tolerated", "pp2_hvar_prediction": "Benign", "cadd_prediction": 2.243002, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 27239079, "genomic_position_hg38": 27199460, "chromosome": "7", "annotation_flag": "automatically_attributed", "lastmodified": "2023-06-06T16:57:48.320237", "ref_allele": "G", "alt_allele": "C", "cdna_change": "c.618C>G", "protein_change": "p.Phe206Leu", "transcript_id": "NM_000522.4", "dbsnp_id": "rs774388075", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI602" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/1301/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/1301/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/1301/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/1301/gene/?format=api" }, "data": { "type": "Gene", "id": "HOXA13" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/1301/?format=api" } }, { "type": "SmallVariant", "id": "1302", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": 0.0002313, "gnomad_AFR_maf": 8.601e-05, "gnomad_AMR_maf": 0.0003685, "gnomad_ASJ_maf": 0.0006527, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 0.0002597, "gnomad_OTH_maf": 0.000943, "gnomad_SAS_maf": 0.0, "ESP_AA_maf": 0.0, "ESP_EA_maf": 0.0006638 }, "predictions": { "sift_prediction": null, "pp2_hvar_prediction": null, "cadd_prediction": 2.461791, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 54965346, "genomic_position_hg38": 54931434, "chromosome": "16", "annotation_flag": "manually_attributed", "lastmodified": "2023-06-06T16:57:48.326478", "ref_allele": "TCTC", "alt_allele": "T", "cdna_change": "c.240_242delCTC", "protein_change": "p.Ser81del", "transcript_id": "NM_005853.5", "dbsnp_id": "rs776389982", "variant_effect": "deletion" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI602" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/1302/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/1302/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/1302/relationships/gene_name?format=api", 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