Variant List
This API endpoint handles listing (/variants) and retrieval (/variants/<ID>/) of genetic variants from the database
GET /api/combinations/OLI554/variants/?format=api
{ "data": [ { "type": "SmallVariant", "id": "1155", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": 4.01e-06, "gnomad_AFR_maf": 0.0, "gnomad_AMR_maf": 0.0, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 8.88e-06, "gnomad_OTH_maf": 0.0, "gnomad_SAS_maf": 0.0, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Tolerated", "pp2_hvar_prediction": "Possibly Damaging", "cadd_prediction": 2.876598, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 55270297, "genomic_position_hg38": 55202604, "chromosome": "7", "annotation_flag": "automatically_attributed", "lastmodified": "2023-06-06T16:57:47.466605", "ref_allele": "G", "alt_allele": "A", "cdna_change": "c.3250G>A", "protein_change": "p.Asp1084Asn", "transcript_id": "NM_005228.4", "dbsnp_id": "rs535060253", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI554" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/1155/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/1155/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/1155/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/1155/gene/?format=api" }, "data": { "type": "Gene", "id": "EGFR" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/1155/?format=api" } }, { "type": "SmallVariant", "id": "1156", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": 0.0001417, "gnomad_AFR_maf": 0.0, "gnomad_AMR_maf": 0.0, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 7.221e-05, "gnomad_OTH_maf": 0.0, "gnomad_SAS_maf": 0.0008828, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Deleterious", "pp2_hvar_prediction": "Possibly Damaging", "cadd_prediction": 3.787809, "mutationtaster_prediction": "Disease causing" }, "status": "CU", "genomic_position_hg19": 38285926, "genomic_position_hg38": 38428408, "chromosome": "8", "annotation_flag": "automatically_attributed_and_verified", "lastmodified": "2023-06-06T16:57:47.472800", "ref_allele": "T", "alt_allele": "G", "cdna_change": "c.119A>C", "protein_change": "p.Asp40Ala", "transcript_id": "NM_023105", "dbsnp_id": "rs765615419", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI554" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/1156/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/1156/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/1156/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/1156/gene/?format=api" }, "data": { "type": "Gene", "id": "FGFR1" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/1156/?format=api" } }, { "type": "SmallVariant", "id": "1157", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": 2.053e-05, "gnomad_AFR_maf": 0.0, "gnomad_AMR_maf": 2.988e-05, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 2.711e-05, "gnomad_OTH_maf": 0.0, "gnomad_SAS_maf": 3.344e-05, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Deleterious", "pp2_hvar_prediction": "Damaging", "cadd_prediction": 4.436398, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 37612350, "genomic_position_hg38": 37644574, "chromosome": "6", "annotation_flag": "automatically_attributed", "lastmodified": "2023-06-06T16:57:47.479077", "ref_allele": "C", "alt_allele": "T", "cdna_change": "c.2324G>A", "protein_change": "p.Arg775Gln", "transcript_id": "NM_153487.3", "dbsnp_id": "rs767222456", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI554" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/1157/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/1157/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/1157/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/1157/gene/?format=api" }, "data": { "type": "Gene", "id": "MDGA1" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/1157/?format=api" } } ], "meta": { "database_name": "OLIgogenic diseases DAtabase (OLIDA)", "resource_url": "olida.ibsquare.be", "api_release_year": "2021", "api_developer": [ [ "Arnau Dillen", "arnau.dillen@ulb.ac.be" ], [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_version": "0.3", "api_maintainers": [ [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_documentation": [ "olida.ibsquare.be/api/swagger", "olida.ibsquare.be/api/redoc" ], "copyright": "Copyright (c) 2025 · OLIDA All Rights Reserved.", "license": "CC Attribution-NonCommercial 4.0 International License", "ontologies": { "ORDO": "http://bioportal.bioontology.org/ontologies/ORDO", "GENO": "http://purl.obolibrary.org/obo/geno.owl", "MI": "http://purl.obolibrary.org/obo/mi.owl", "NCIT": "http://purl.obolibrary.org/obo/ncit.owl", "OGI": "http://purl.obolibrary.org/obo/ogi.owl", "OGG": "http://purl.obolibrary.org/obo/ogg.owl" }, "relevant_publications_doi": [ "10.1093/nar/gkv1068", "10.1093/database/baac023" ], "Variant serializers": [ "SmallVariantSerializer", "CopyNumberVariantSerializer" ], "size": 3 } }