Variant List
This API endpoint handles listing (/variants) and retrieval (/variants/<ID>/) of genetic variants from the database
GET /api/combinations/OLI330/variants/?format=api
{ "data": [ { "type": "SmallVariant", "id": "638", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": 1.193e-05, "gnomad_AFR_maf": 0.0, "gnomad_AMR_maf": 0.0, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 4.619e-05, "gnomad_NFE_maf": 1.758e-05, "gnomad_OTH_maf": 0.0, "gnomad_SAS_maf": 0.0, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Tolerated", "pp2_hvar_prediction": "Possibly Damaging", "cadd_prediction": 3.0021, "mutationtaster_prediction": "Disease causing" }, "status": "CU", "genomic_position_hg19": 33039600, "genomic_position_hg38": 31667287, "chromosome": "21", "annotation_flag": "automatically_attributed", "lastmodified": "2023-06-06T16:57:44.253400", "ref_allele": "C", "alt_allele": "T", "cdna_change": null, "protein_change": "p.Ala90Val", "transcript_id": null, "dbsnp_id": "rs1280042397", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 8 }, "data": [ { "type": "Combination", "id": "OLI328" }, { "type": "Combination", "id": "OLI329" }, { "type": "Combination", "id": "OLI330" }, { "type": "Combination", "id": "OLI331" }, { "type": "Combination", "id": "OLI332" }, { "type": "Combination", "id": "OLI333" }, { "type": "Combination", "id": "OLI334" }, { "type": "Combination", "id": "OLI335" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/638/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/638/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/638/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/638/gene/?format=api" }, "data": { "type": "Gene", "id": "SOD1" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/638/?format=api" } }, { "type": "SmallVariant", "id": "652", "attributes": { "frequencies": { "KGP_genomes_maf": 0.0004, "KGP_genomes_AFR_maf": 0.0, "KGP_genomes_AMR_maf": 0.0029, "KGP_genomes_EAS_maf": 0.0, "KGP_genomes_EUR_maf": 0.0, "KGP_genomes_SAS_maf": 0.0, "gnomad_maf": 0.0007332, "gnomad_AFR_maf": 0.0002466, "gnomad_AMR_maf": 0.00162, "gnomad_ASJ_maf": 0.002284, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.0002311, "gnomad_NFE_maf": 0.0007764, "gnomad_OTH_maf": 0.001305, "gnomad_SAS_maf": 0.0, "ESP_AA_maf": 0.0004539, "ESP_EA_maf": 0.001163 }, "predictions": { "sift_prediction": "Tolerated", "pp2_hvar_prediction": "Benign", "cadd_prediction": 1.785846, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 95481748, "genomic_position_hg38": 92719466, "chromosome": "9", "annotation_flag": "automatically_attributed", "lastmodified": "2023-06-06T16:57:44.346482", "ref_allele": "A", "alt_allele": "T", "cdna_change": "c.1179T>A", "protein_change": "p.Asn393Lys", "transcript_id": "NM_015250.3", "dbsnp_id": "rs144427583", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI330" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/652/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/652/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/652/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/652/gene/?format=api" }, "data": { "type": "Gene", "id": "BICD2" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/652/?format=api" } }, { "type": "SmallVariant", "id": "653", "attributes": { "frequencies": { "KGP_genomes_maf": 0.0004, "KGP_genomes_AFR_maf": 0.0, "KGP_genomes_AMR_maf": 0.0, "KGP_genomes_EAS_maf": 0.0, "KGP_genomes_EUR_maf": 0.0, "KGP_genomes_SAS_maf": 0.002, "gnomad_maf": 0.002255, "gnomad_AFR_maf": 0.001264, "gnomad_AMR_maf": 0.001125, "gnomad_ASJ_maf": 0.003799, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.0004446, "gnomad_NFE_maf": 0.003453, "gnomad_OTH_maf": 0.00316, "gnomad_SAS_maf": 0.001851, "ESP_AA_maf": 0.000947, "ESP_EA_maf": 0.004651 }, "predictions": { "sift_prediction": "Tolerated", "pp2_hvar_prediction": "Benign", "cadd_prediction": 1.465961, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 1256259, "genomic_position_hg38": 1206259, "chromosome": "16", "annotation_flag": "automatically_attributed", "lastmodified": "2023-06-06T16:57:44.353093", "ref_allele": "C", "alt_allele": "T", "cdna_change": "c.2759C>T", "protein_change": "p.Thr920Met", "transcript_id": "NM_021098.2", "dbsnp_id": "rs59052554", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI330" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/653/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/653/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/653/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/653/gene/?format=api" }, "data": { "type": "Gene", "id": "CACNA1H" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/653/?format=api" } }, { "type": "SmallVariant", "id": "654", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": 0.0003107, "gnomad_AFR_maf": 0.0, "gnomad_AMR_maf": 0.0, "gnomad_ASJ_maf": 0.0003515, "gnomad_EAS_maf": 9.136e-05, "gnomad_FIN_maf": 0.000718, "gnomad_NFE_maf": 0.0005204, "gnomad_OTH_maf": 0.0002258, "gnomad_SAS_maf": 0.0, "ESP_AA_maf": 0.0, "ESP_EA_maf": 0.0003676 }, "predictions": { "sift_prediction": "Deleterious", "pp2_hvar_prediction": "Possibly Damaging", "cadd_prediction": 3.372633, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 17767083, "genomic_position_hg38": 17656274, "chromosome": "19", "annotation_flag": "automatically_attributed", "lastmodified": "2023-06-06T16:57:44.359648", "ref_allele": "G", "alt_allele": "A", "cdna_change": "c.892C>T", "protein_change": "p.Arg298Trp", "transcript_id": "NM_001080421.2", "dbsnp_id": "rs201739401", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI330" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/654/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/654/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/654/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/654/gene/?format=api" }, "data": { "type": "Gene", "id": "UNC13A" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/654/?format=api" } }, { "type": "SmallVariant", "id": "655", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": null, "gnomad_AFR_maf": null, "gnomad_AMR_maf": null, "gnomad_ASJ_maf": null, "gnomad_EAS_maf": null, "gnomad_FIN_maf": null, "gnomad_NFE_maf": null, "gnomad_OTH_maf": null, "gnomad_SAS_maf": null, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Tolerated", "pp2_hvar_prediction": "Benign", "cadd_prediction": -0.471429, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 17690554, "genomic_position_hg38": 17209664, "chromosome": "22", "annotation_flag": "automatically_attributed", "lastmodified": "2023-06-06T16:57:44.366260", "ref_allele": "C", "alt_allele": "G", "cdna_change": "c.14G>C", "protein_change": "p.Gly5Ala", "transcript_id": "NM_001282227.1", "dbsnp_id": "rs752999798", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI330" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/655/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/655/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/655/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/655/gene/?format=api" }, "data": { "type": "Gene", "id": "ADA2" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/655/?format=api" } }, { "type": "SmallVariant", "id": "656", "attributes": { "frequencies": { "KGP_genomes_maf": 0.0046, "KGP_genomes_AFR_maf": 0.0015, "KGP_genomes_AMR_maf": 0.0115, "KGP_genomes_EAS_maf": 0.0, "KGP_genomes_EUR_maf": 0.0129, "KGP_genomes_SAS_maf": 0.0, "gnomad_maf": 0.005618, "gnomad_AFR_maf": 0.001169, "gnomad_AMR_maf": 0.004307, "gnomad_ASJ_maf": 0.002581, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.002963, "gnomad_NFE_maf": 0.0098, "gnomad_OTH_maf": 0.00636, "gnomad_SAS_maf": 3.266e-05, "ESP_AA_maf": 0.002043, "ESP_EA_maf": 0.007791 }, "predictions": { "sift_prediction": "Tolerated", "pp2_hvar_prediction": "Benign", "cadd_prediction": -0.564923, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 32987594, "genomic_position_hg38": 32987596, "chromosome": "9", "annotation_flag": "manually_corrected", "lastmodified": "2023-06-06T16:57:44.372958", "ref_allele": "G", "alt_allele": "T", "cdna_change": "c.431C>A", "protein_change": "p.Ser144Tyr", "transcript_id": "NM_001195248.2", "dbsnp_id": "rs34778324", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI330" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/656/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/656/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/656/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/656/gene/?format=api" }, "data": { "type": "Gene", "id": "APTX" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/656/?format=api" } }, { "type": "SmallVariant", "id": "657", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": null, "gnomad_AFR_maf": null, "gnomad_AMR_maf": null, "gnomad_ASJ_maf": null, "gnomad_EAS_maf": null, "gnomad_FIN_maf": null, "gnomad_NFE_maf": null, "gnomad_OTH_maf": null, "gnomad_SAS_maf": null, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": null, "pp2_hvar_prediction": null, "cadd_prediction": 4.573808, "mutationtaster_prediction": null }, "status": "CU", "genomic_position_hg19": 4805254, "genomic_position_hg38": 4901959, "chromosome": "17", "annotation_flag": "manually_corrected", "lastmodified": "2023-06-06T16:57:44.379714", "ref_allele": "T", "alt_allele": "TTGCAGACCCC", "cdna_change": "c.472_473insGGGGTCTGCA", "protein_change": "p.Asp158GlyfsTer47", "transcript_id": "NM_000080.4", "dbsnp_id": "NA", "variant_effect": "frameshift" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI330" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/657/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/657/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/657/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/657/gene/?format=api" }, "data": { "type": "Gene", "id": "CHRNE" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/657/?format=api" } }, { "type": "SmallVariant", "id": "658", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": 0.0001858, "gnomad_AFR_maf": 6.505e-05, "gnomad_AMR_maf": 0.0, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.0008364, "gnomad_NFE_maf": 0.0002327, "gnomad_OTH_maf": 0.0001661, "gnomad_SAS_maf": 0.0, "ESP_AA_maf": 0.0, "ESP_EA_maf": 0.0003565 }, "predictions": { "sift_prediction": "Tolerated", "pp2_hvar_prediction": "Benign", "cadd_prediction": 2.031407, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 73472502, "genomic_position_hg38": 71712745, "chromosome": "10", "annotation_flag": "automatically_attributed", "lastmodified": "2023-06-06T16:57:44.386462", "ref_allele": "A", "alt_allele": "G", "cdna_change": "c.3301A>G", "protein_change": "p.Ile1101Val", "transcript_id": "NM_001171930.1", "dbsnp_id": "rs199510686", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI330" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/658/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/658/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/658/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/658/gene/?format=api" }, "data": { "type": "Gene", "id": "CDH23" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/658/?format=api" } }, { "type": "SmallVariant", "id": "659", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": 0.0002308, "gnomad_AFR_maf": 0.0, "gnomad_AMR_maf": 2.891e-05, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.0005082, "gnomad_NFE_maf": 0.0004048, "gnomad_OTH_maf": 0.0, "gnomad_SAS_maf": 0.0, "ESP_AA_maf": 0.0, "ESP_EA_maf": 0.0004651 }, "predictions": { "sift_prediction": "Deleterious", "pp2_hvar_prediction": "Benign", "cadd_prediction": 3.159446, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 49166098, "genomic_position_hg38": 49128665, "chromosome": "3", "annotation_flag": "manually_attributed", "lastmodified": "2023-06-06T16:57:44.393336", "ref_allele": "G", "alt_allele": "A", "cdna_change": "c.1886C>T", "protein_change": "p.Pro629Leu", "transcript_id": "NM_002292.4", "dbsnp_id": "rs148491867", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI330" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/659/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/659/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/659/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/659/gene/?format=api" }, "data": { "type": "Gene", "id": "LAMB2" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/659/?format=api" } }, { "type": "SmallVariant", "id": "660", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": 4.772e-05, "gnomad_AFR_maf": 0.0, "gnomad_AMR_maf": 0.0, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 4.619e-05, "gnomad_NFE_maf": 9.669e-05, "gnomad_OTH_maf": 0.0, "gnomad_SAS_maf": 0.0, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Deleterious", "pp2_hvar_prediction": "Benign", "cadd_prediction": 2.94115, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 15797898, "genomic_position_hg38": 15704041, "chromosome": "16", "annotation_flag": "manually_corrected", "lastmodified": "2023-06-06T16:57:44.399940", "ref_allele": "C", "alt_allele": "G", "cdna_change": "c.5890G>C", "protein_change": "p.Glu1964Gln", "transcript_id": "NM_001040114.2", "dbsnp_id": "rs768140376", "variant_effect": "missense" }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI330" } ], "links": { "self": 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