Variant List
This API endpoint handles listing (/variants) and retrieval (/variants/<ID>/) of genetic variants from the database
GET /api/combinations/OLI1768/variants/?format=api
{ "data": [ { "type": "SmallVariant", "id": "3714", "attributes": { "frequencies": { "KGP_genomes_maf": 0.0517, "KGP_genomes_AFR_maf": 0.0121, "KGP_genomes_AMR_maf": 0.0937, "KGP_genomes_EAS_maf": 0.0, "KGP_genomes_EUR_maf": 0.159, "KGP_genomes_SAS_maf": 0.0184, "gnomad_maf": null, "gnomad_AFR_maf": null, "gnomad_AMR_maf": null, "gnomad_ASJ_maf": null, "gnomad_EAS_maf": null, "gnomad_FIN_maf": null, "gnomad_NFE_maf": null, "gnomad_OTH_maf": null, "gnomad_SAS_maf": null, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": null, "pp2_hvar_prediction": null, "cadd_prediction": 0.076201, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 50756774, "genomic_position_hg38": 50722863, "chromosome": "16", "annotation_flag": null, "lastmodified": "2024-02-29T15:02:34.438244", "ref_allele": "C", "alt_allele": "T", "cdna_change": "c.2798+158C>T", "protein_change": null, "transcript_id": "NM_022162.1", "dbsnp_id": "NA", "variant_effect": null }, "relationships": { "in_combination": { "meta": { "count": 25 }, "data": [ { "type": "Combination", "id": "OLI1750" }, { "type": "Combination", "id": "OLI1751" }, { "type": "Combination", "id": "OLI1754" }, { "type": "Combination", "id": "OLI1755" }, { "type": "Combination", "id": "OLI1756" }, { "type": "Combination", "id": "OLI1757" }, { "type": "Combination", "id": "OLI1762" }, { "type": "Combination", "id": "OLI1763" }, { "type": "Combination", "id": "OLI1764" }, { "type": "Combination", "id": "OLI1765" }, { "type": "Combination", "id": "OLI1767" }, { "type": "Combination", "id": "OLI1768" }, { "type": "Combination", "id": "OLI1769" }, { "type": "Combination", "id": "OLI1770" }, { "type": "Combination", "id": "OLI1773" }, { "type": "Combination", "id": "OLI1774" }, { "type": "Combination", "id": "OLI1776" }, { "type": "Combination", "id": "OLI1778" }, { "type": "Combination", "id": "OLI1780" }, { "type": "Combination", "id": "OLI1781" }, { "type": "Combination", "id": "OLI1782" }, { "type": "Combination", "id": "OLI1785" }, { "type": "Combination", "id": "OLI1786" }, { "type": "Combination", "id": "OLI1787" }, { "type": "Combination", "id": "OLI1789" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/3714/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/3714/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/3714/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/3714/gene/?format=api" }, "data": { "type": "Gene", "id": "NOD2" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/3714/?format=api" } }, { "type": "SmallVariant", "id": "3725", "attributes": { "frequencies": { "KGP_genomes_maf": 0.0144, "KGP_genomes_AFR_maf": 0.0023, "KGP_genomes_AMR_maf": 0.0245, "KGP_genomes_EAS_maf": 0.0, "KGP_genomes_EUR_maf": 0.0507, "KGP_genomes_SAS_maf": 0.001, "gnomad_maf": 0.02605, "gnomad_AFR_maf": 0.006992, "gnomad_AMR_maf": 0.02024, "gnomad_ASJ_maf": 0.0223, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.01873, "gnomad_NFE_maf": 0.04329, "gnomad_OTH_maf": 0.03045, "gnomad_SAS_maf": 0.0003925, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Deleterious", "pp2_hvar_prediction": "Possibly Damaging", "cadd_prediction": 3.325543, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 50745926, "genomic_position_hg38": 50712015, "chromosome": "16", "annotation_flag": null, "lastmodified": "2024-02-29T15:02:34.934151", "ref_allele": "C", "alt_allele": "T", "cdna_change": "c.2104C>T", "protein_change": "p.Arg702Trp", "transcript_id": "NM_022162.3", "dbsnp_id": "NA", "variant_effect": null }, "relationships": { "in_combination": { "meta": { "count": 10 }, "data": [ { "type": "Combination", "id": "OLI1757" }, { "type": "Combination", "id": "OLI1762" }, { "type": "Combination", "id": "OLI1765" }, { "type": "Combination", "id": "OLI1768" }, { "type": "Combination", "id": "OLI1770" }, { "type": "Combination", "id": "OLI1774" }, { "type": "Combination", "id": "OLI1776" }, { "type": "Combination", "id": "OLI1779" }, { "type": "Combination", "id": "OLI1780" }, { "type": "Combination", "id": "OLI1786" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/3725/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/3725/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/3725/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/3725/gene/?format=api" }, "data": { "type": "Gene", "id": "NOD2" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/3725/?format=api" } }, { "type": "SmallVariant", "id": "3736", "attributes": { "frequencies": { "KGP_genomes_maf": 0.004, "KGP_genomes_AFR_maf": 0.0, "KGP_genomes_AMR_maf": 0.0086, "KGP_genomes_EAS_maf": 0.0, "KGP_genomes_EUR_maf": 0.0119, "KGP_genomes_SAS_maf": 0.002, "gnomad_maf": 0.008316, "gnomad_AFR_maf": 0.001232, "gnomad_AMR_maf": 0.00408, "gnomad_ASJ_maf": 0.01301, "gnomad_EAS_maf": 5.437e-05, "gnomad_FIN_maf": 0.02317, "gnomad_NFE_maf": 0.00928, "gnomad_OTH_maf": 0.008649, "gnomad_SAS_maf": 0.006142, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Tolerated", "pp2_hvar_prediction": "Benign", "cadd_prediction": -0.769166, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 247587343, "genomic_position_hg38": 247424041, "chromosome": "1", "annotation_flag": null, "lastmodified": "2024-02-29T15:02:35.682258", "ref_allele": "G", "alt_allele": "A", "cdna_change": "c.592G>A", "protein_change": "p.Val200Met", "transcript_id": "NM_001079821.3", "dbsnp_id": "NA", "variant_effect": null }, "relationships": { "in_combination": { "meta": { "count": 3 }, "data": [ { "type": "Combination", "id": "OLI1768" }, { "type": "Combination", "id": "OLI1771" }, { "type": "Combination", "id": "OLI1788" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/3736/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/3736/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/3736/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/3736/gene/?format=api" }, "data": { "type": "Gene", "id": "NLRP3" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/3736/?format=api" } } ], "meta": { "database_name": "OLIgogenic diseases DAtabase (OLIDA)", "resource_url": "olida.ibsquare.be", "api_release_year": "2021", "api_developer": [ [ "Arnau Dillen", "arnau.dillen@ulb.ac.be" ], [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_version": "0.3", "api_maintainers": [ [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_documentation": [ "olida.ibsquare.be/api/swagger", "olida.ibsquare.be/api/redoc" ], "copyright": "Copyright (c) 2025 · OLIDA All Rights Reserved.", "license": "CC Attribution-NonCommercial 4.0 International License", "ontologies": { "ORDO": "http://bioportal.bioontology.org/ontologies/ORDO", "GENO": "http://purl.obolibrary.org/obo/geno.owl", "MI": "http://purl.obolibrary.org/obo/mi.owl", "NCIT": "http://purl.obolibrary.org/obo/ncit.owl", "OGI": "http://purl.obolibrary.org/obo/ogi.owl", "OGG": "http://purl.obolibrary.org/obo/ogg.owl" }, "relevant_publications_doi": [ "10.1093/nar/gkv1068", "10.1093/database/baac023" ], "Variant serializers": [ "SmallVariantSerializer", "CopyNumberVariantSerializer" ], "size": 3 } }