Variant List
This API endpoint handles listing (/variants) and retrieval (/variants/<ID>/) of genetic variants from the database
GET /api/combinations/OLI1718/variants/?format=api
{ "data": [ { "type": "SmallVariant", "id": "3644", "attributes": { "frequencies": { "KGP_genomes_maf": 0.0002, "KGP_genomes_AFR_maf": 0.0, "KGP_genomes_AMR_maf": 0.0, "KGP_genomes_EAS_maf": 0.001, "KGP_genomes_EUR_maf": 0.0, "KGP_genomes_SAS_maf": 0.0, "gnomad_maf": 1.331e-05, "gnomad_AFR_maf": 0.0, "gnomad_AMR_maf": 0.0, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 0.0001951, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 0.0, "gnomad_OTH_maf": 0.0, "gnomad_SAS_maf": 0.0, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Tolerated", "pp2_hvar_prediction": "Benign", "cadd_prediction": 2.46475, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 64879718, "genomic_position_hg38": 64485938, "chromosome": "12", "annotation_flag": null, "lastmodified": "2024-02-29T15:02:32.006247", "ref_allele": "G", "alt_allele": "C", "cdna_change": null, "protein_change": "p.Val421Leu", "transcript_id": null, "dbsnp_id": "NA", "variant_effect": null }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI1718" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/3644/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/3644/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/3644/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/3644/gene/?format=api" }, "data": { "type": "Gene", "id": "TBK1" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/3644/?format=api" } }, { "type": "SmallVariant", "id": "3645", "attributes": { "frequencies": { "KGP_genomes_maf": 0.002, "KGP_genomes_AFR_maf": 0.0008, "KGP_genomes_AMR_maf": 0.0014, "KGP_genomes_EAS_maf": 0.006, "KGP_genomes_EUR_maf": 0.001, "KGP_genomes_SAS_maf": 0.001, "gnomad_maf": 0.001063, "gnomad_AFR_maf": 0.0004308, "gnomad_AMR_maf": 0.0004049, "gnomad_ASJ_maf": 0.00139, "gnomad_EAS_maf": 0.004241, "gnomad_FIN_maf": 9.24e-05, "gnomad_NFE_maf": 0.0005731, "gnomad_OTH_maf": 0.0006523, "gnomad_SAS_maf": 0.002712, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Tolerated", "pp2_hvar_prediction": "Possibly Damaging", "cadd_prediction": -0.056486, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 23915658, "genomic_position_hg38": 23573471, "chromosome": "22", "annotation_flag": null, "lastmodified": "2024-02-29T15:02:32.023865", "ref_allele": "G", "alt_allele": "A", "cdna_change": null, "protein_change": "p.Thr146Met", "transcript_id": null, "dbsnp_id": "NA", "variant_effect": null }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI1718" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/3645/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/3645/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/3645/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/3645/gene/?format=api" }, "data": { "type": "Gene", "id": "IGLL1" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/3645/?format=api" } } ], "meta": { "database_name": "OLIgogenic diseases DAtabase (OLIDA)", "resource_url": "olida.ibsquare.be", "api_release_year": "2021", "api_developer": [ [ "Arnau Dillen", "arnau.dillen@ulb.ac.be" ], [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_version": "0.3", "api_maintainers": [ [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_documentation": [ "olida.ibsquare.be/api/swagger", "olida.ibsquare.be/api/redoc" ], "copyright": "Copyright (c) 2025 · OLIDA All Rights Reserved.", "license": "CC Attribution-NonCommercial 4.0 International License", "ontologies": { "ORDO": "http://bioportal.bioontology.org/ontologies/ORDO", "GENO": "http://purl.obolibrary.org/obo/geno.owl", "MI": "http://purl.obolibrary.org/obo/mi.owl", "NCIT": "http://purl.obolibrary.org/obo/ncit.owl", "OGI": "http://purl.obolibrary.org/obo/ogi.owl", "OGG": "http://purl.obolibrary.org/obo/ogg.owl" }, "relevant_publications_doi": [ "10.1093/nar/gkv1068", "10.1093/database/baac023" ], "Variant serializers": [ "SmallVariantSerializer", "CopyNumberVariantSerializer" ], "size": 2 } }