Variant List
This API endpoint handles listing (/variants) and retrieval (/variants/<ID>/) of genetic variants from the database
GET /api/combinations/OLI1595/variants/?format=api
{ "data": [ { "type": "SmallVariant", "id": "3364", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": 0.0001291, "gnomad_AFR_maf": 6.462e-05, "gnomad_AMR_maf": 2.896e-05, "gnomad_ASJ_maf": 9.934e-05, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 0.0002298, "gnomad_OTH_maf": 0.0004952, "gnomad_SAS_maf": 0.0, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Tolerated", "pp2_hvar_prediction": "Benign", "cadd_prediction": 0.304691, "mutationtaster_prediction": "Disease causing" }, "status": "CU", "genomic_position_hg19": 68620023, "genomic_position_hg38": 67754305, "chromosome": "4", "annotation_flag": null, "lastmodified": "2023-06-06T16:58:00.678985", "ref_allele": "G", "alt_allele": "T", "cdna_change": "c.31C>A", "protein_change": "p.Gln11Lys", "transcript_id": null, "dbsnp_id": "NA", "variant_effect": null }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI1595" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/3364/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/3364/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/3364/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/3364/gene/?format=api" }, "data": { "type": "Gene", "id": "GNRHR" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/3364/?format=api" } }, { "type": "SmallVariant", "id": "3365", "attributes": { "frequencies": { "KGP_genomes_maf": null, "KGP_genomes_AFR_maf": null, "KGP_genomes_AMR_maf": null, "KGP_genomes_EAS_maf": null, "KGP_genomes_EUR_maf": null, "KGP_genomes_SAS_maf": null, "gnomad_maf": 0.0001292, "gnomad_AFR_maf": 6.464e-05, "gnomad_AMR_maf": 2.896e-05, "gnomad_ASJ_maf": 9.934e-05, "gnomad_EAS_maf": 0.0, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 0.0002297, "gnomad_OTH_maf": 0.0004952, "gnomad_SAS_maf": 0.0, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Tolerated", "pp2_hvar_prediction": "Benign", "cadd_prediction": -0.046613, "mutationtaster_prediction": "Disease causing" }, "status": "CU", "genomic_position_hg19": 68620024, "genomic_position_hg38": 67754306, "chromosome": "4", "annotation_flag": null, "lastmodified": "2023-06-06T16:58:00.685281", "ref_allele": "A", "alt_allele": "T", "cdna_change": "c.30T>A", "protein_change": "p.Asn10Lys", "transcript_id": null, "dbsnp_id": "NA", "variant_effect": null }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI1595" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/3365/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/3365/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/3365/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/3365/gene/?format=api" }, "data": { "type": "Gene", "id": "GNRHR" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/3365/?format=api" } }, { "type": "SmallVariant", "id": "3366", "attributes": { "frequencies": { "KGP_genomes_maf": 0.0002, "KGP_genomes_AFR_maf": 0.0008, "KGP_genomes_AMR_maf": 0.0, "KGP_genomes_EAS_maf": 0.0, "KGP_genomes_EUR_maf": 0.0, "KGP_genomes_SAS_maf": 0.0, "gnomad_maf": 9.943e-05, "gnomad_AFR_maf": 0.0006767, "gnomad_AMR_maf": 2.892e-05, "gnomad_ASJ_maf": 0.0, "gnomad_EAS_maf": 5.438e-05, "gnomad_FIN_maf": 0.0, "gnomad_NFE_maf": 7.912e-05, "gnomad_OTH_maf": 0.0003261, "gnomad_SAS_maf": 3.267e-05, "ESP_AA_maf": null, "ESP_EA_maf": null }, "predictions": { "sift_prediction": "Deleterious", "pp2_hvar_prediction": "Benign", "cadd_prediction": 3.245078, "mutationtaster_prediction": "Polymorphism" }, "status": "CU", "genomic_position_hg19": 122630729, "genomic_position_hg38": 120871217, "chromosome": "10", "annotation_flag": null, "lastmodified": "2023-06-06T16:58:00.691626", "ref_allele": "C", "alt_allele": "T", "cdna_change": "c.1342C>T", "protein_change": "p.Arg448Trp", "transcript_id": null, "dbsnp_id": "NA", "variant_effect": null }, "relationships": { "in_combination": { "meta": { "count": 1 }, "data": [ { "type": "Combination", "id": "OLI1595" } ], "links": { "self": "https://olida.ibsquare.be/api/variants/3366/relationships/in_combination?format=api", "related": "https://olida.ibsquare.be/api/variants/3366/combinations/?format=api" } }, "gene_name": { "links": { "self": "https://olida.ibsquare.be/api/variants/3366/relationships/gene_name?format=api", "related": "https://olida.ibsquare.be/api/variants/3366/gene/?format=api" }, "data": { "type": "Gene", "id": "WDR11" } } }, "links": { "self": "https://olida.ibsquare.be/api/variants/3366/?format=api" } } ], "meta": { "database_name": "OLIgogenic diseases DAtabase (OLIDA)", "resource_url": "olida.ibsquare.be", "api_release_year": "2021", "api_developer": [ [ "Arnau Dillen", "arnau.dillen@ulb.ac.be" ], [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_version": "0.3", "api_maintainers": [ [ "Charlotte Nachtegael", "charlotte.nachtegael@ulb.be" ] ], "api_documentation": [ "olida.ibsquare.be/api/swagger", "olida.ibsquare.be/api/redoc" ], "copyright": "Copyright (c) 2025 · OLIDA All Rights Reserved.", "license": "CC Attribution-NonCommercial 4.0 International License", "ontologies": { "ORDO": "http://bioportal.bioontology.org/ontologies/ORDO", "GENO": "http://purl.obolibrary.org/obo/geno.owl", "MI": "http://purl.obolibrary.org/obo/mi.owl", "NCIT": "http://purl.obolibrary.org/obo/ncit.owl", "OGI": "http://purl.obolibrary.org/obo/ogi.owl", "OGG": "http://purl.obolibrary.org/obo/ogg.owl" }, "relevant_publications_doi": [ "10.1093/nar/gkv1068", "10.1093/database/baac023" ], "Variant serializers": [ "SmallVariantSerializer", "CopyNumberVariantSerializer" ], "size": 3 } }